Wall clock time and date at job start Tue Mar 31 2020 22:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00000 * 2 1 4 4 O 1.42894 * 109.47173 * 135.00178 * 3 2 1 5 5 C 1.42902 * 114.00036 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47248 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99935 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00060 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00060 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.50126 * 34.92619 * 9 8 6 11 11 C 1.53197 * 109.49585 * 274.82175 * 9 8 6 12 12 N 1.46930 * 108.81515 * 185.39565 * 11 9 8 13 13 C 1.36932 * 120.64498 * 233.60440 * 12 11 9 14 14 H 1.08004 * 119.99482 * 27.64389 * 13 12 11 15 15 C 1.38810 * 120.00257 * 207.64762 * 13 12 11 16 16 N 1.31620 * 119.99964 * 17.33673 * 15 13 12 17 17 Si 1.86809 * 119.99869 * 197.33979 * 15 13 12 18 18 H 1.48503 * 109.47130 * 89.99972 * 17 15 13 19 19 H 1.48494 * 109.47017 * 209.99703 * 17 15 13 20 20 H 1.48501 * 109.47003 * 329.99944 * 17 15 13 21 21 C 1.46954 * 118.71685 * 53.62507 * 12 11 9 22 22 C 1.53092 * 108.75580 * 306.49693 * 21 12 11 23 23 C 1.53064 * 109.53348 * 174.72618 * 22 21 12 24 24 C 1.53120 * 109.16935 * 176.70013 * 23 22 21 25 25 O 1.42891 * 109.40961 * 302.53344 * 24 23 22 26 26 C 1.42906 * 114.13154 * 61.18441 * 25 24 23 27 27 C 1.53089 * 109.47190 * 294.44262 * 22 21 12 28 28 C 1.52951 * 109.48401 * 54.54546 * 22 21 12 29 29 H 1.07996 * 119.99880 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99911 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00303 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47140 * 255.00561 * 3 2 1 33 33 H 1.09000 * 109.47047 * 15.00101 * 3 2 1 34 34 H 1.09000 * 109.47247 * 299.99830 * 5 4 3 35 35 H 1.09002 * 109.47334 * 59.99574 * 5 4 3 36 36 H 0.97003 * 120.00173 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.57719 * 305.18906 * 11 9 8 38 38 H 1.08992 * 109.58112 * 65.59483 * 11 9 8 39 39 H 0.97003 * 119.99262 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.58904 * 186.71558 * 21 12 11 41 41 H 1.08999 * 109.70991 * 66.34740 * 21 12 11 42 42 H 1.09004 * 109.52399 * 296.60912 * 23 22 21 43 43 H 1.08998 * 109.52662 * 56.79639 * 23 22 21 44 44 H 1.09005 * 109.48176 * 182.54721 * 24 23 22 45 45 H 1.09007 * 109.47692 * 62.51511 * 24 23 22 46 46 H 1.08997 * 109.49077 * 178.81708 * 26 25 24 47 47 H 1.09003 * 109.48217 * 58.76475 * 26 25 24 48 48 H 1.08997 * 109.52444 * 303.14232 * 27 22 21 49 49 H 1.09003 * 109.52475 * 63.33135 * 27 22 21 50 50 H 1.09000 * 109.46111 * 178.72040 * 28 22 21 51 51 H 1.08993 * 109.45041 * 58.74176 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 6 4.9933 2.2573 2.0627 7 8 5.0885 1.2111 2.6688 8 7 5.8577 3.2610 2.3111 9 6 6.9134 3.0878 3.3119 10 1 7.2626 2.0553 3.2975 11 6 6.3608 3.4221 4.7011 12 7 7.4608 3.3696 5.6738 13 6 7.3614 2.5950 6.7987 14 1 6.7397 1.7119 6.7929 15 6 8.0596 2.9449 7.9462 16 7 8.5331 4.1655 8.0821 17 14 8.3271 1.6834 9.2978 18 1 9.5954 0.9523 9.0485 19 1 8.4033 2.3732 10.6106 20 1 7.1954 0.7220 9.3087 21 6 8.6694 4.1649 5.4165 22 6 9.1946 3.8242 4.0194 23 6 10.3760 4.7365 3.6803 24 6 10.9466 4.3345 2.3175 25 8 11.3334 2.9593 2.3516 26 6 10.2577 2.0563 2.6155 27 6 9.6598 2.3660 3.9906 28 6 8.0796 4.0261 2.9921 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 2.4754 1.4869 -0.9927 33 1 1.3855 2.1161 0.2660 34 1 4.3579 2.6409 0.0617 35 1 3.2677 3.2695 1.3204 36 1 5.7814 4.0980 1.8266 37 1 5.9293 4.4230 4.6913 38 1 5.5962 2.6951 4.9747 39 1 9.0213 4.4097 8.8839 40 1 9.4292 3.9262 6.1608 41 1 8.4286 5.2267 5.4676 42 1 10.0375 5.7720 3.6423 43 1 11.1475 4.6323 4.4432 44 1 11.8164 4.9513 2.0913 45 1 10.1878 4.4798 1.5485 46 1 10.6313 1.0324 2.6037 47 1 9.4897 2.1722 1.8507 48 1 10.4158 2.2096 4.7601 49 1 8.8100 1.7088 4.1747 50 1 8.4604 3.8054 1.9949 51 1 7.7350 5.0594 3.0288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099572493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:48 Heat of formation + Delta-G solvation = -83.023051 kcal Electronic energy + Delta-G solvation = -31105.540203 eV Core-core repulsion = 27006.289273 eV Total energy + Delta-G solvation = -4099.250930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.28153 -39.38088 -37.92414 -36.83004 -34.40976 -34.07084 -33.52997 -31.43449 -30.70451 -29.81163 -27.90809 -27.12308 -25.66623 -25.44007 -23.27825 -22.98254 -21.98826 -20.72291 -20.23735 -19.97866 -18.11162 -17.26384 -16.75684 -16.64700 -16.51193 -16.06854 -15.69121 -15.46868 -14.91164 -14.71840 -14.71496 -14.39846 -13.95845 -13.83361 -13.66242 -13.47329 -13.40988 -13.04455 -12.53202 -12.48518 -12.38743 -12.27738 -11.87738 -11.41696 -11.37667 -11.25711 -11.02217 -10.89800 -10.82378 -10.74918 -10.42588 -10.21995 -10.18230 -10.02291 -9.92461 -9.79136 -9.64632 -9.61006 -9.40481 -8.92479 -8.86864 -8.40993 -6.69186 -5.79931 -3.21924 1.83939 2.77735 2.92475 3.40397 3.47330 3.49607 3.93315 4.17534 4.50415 4.64143 4.78793 4.83652 4.92879 4.97813 4.99146 5.08350 5.17557 5.20503 5.26122 5.36519 5.41688 5.46064 5.50838 5.56161 5.57480 5.69643 5.76380 5.83418 5.92231 6.00429 6.14809 6.15966 6.21509 6.27145 6.32754 6.37182 6.50644 6.59231 6.65304 6.74504 6.80981 6.85011 6.93750 6.98643 7.28092 7.49733 7.61211 7.69155 7.83013 8.39830 8.45993 9.20472 9.82387 10.37557 11.28651 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.003407 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.125379 B = 8217.309232 C =10214.777622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.509 3.491 7 O -0.513 6.513 8 N -0.723 5.723 9 C 0.126 3.874 10 H 0.091 0.909 11 C 0.141 3.859 12 N -0.584 5.584 13 C -0.250 4.250 14 H 0.067 0.933 15 C 0.005 3.995 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.183 3.817 22 C -0.078 4.078 23 C -0.140 4.140 24 C 0.062 3.938 25 O -0.388 6.388 26 C 0.059 3.941 27 C -0.134 4.134 28 C -0.109 4.109 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.394 0.606 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.253 0.747 40 H 0.092 0.908 41 H 0.019 0.981 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 1.579 -18.953 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.293 3.707 7 O -0.387 6.387 8 N -0.376 5.376 9 C 0.021 3.979 10 H 0.109 0.891 11 C 0.013 3.987 12 N -0.305 5.305 13 C -0.379 4.379 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.547 5.547 17 Si 0.731 3.269 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.203 1.203 21 C 0.057 3.943 22 C -0.080 4.080 23 C -0.178 4.178 24 C -0.015 4.015 25 O -0.307 6.307 26 C -0.017 4.017 27 C -0.172 4.172 28 C -0.147 4.147 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.227 0.773 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.037 0.963 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.073 0.927 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.832 0.624 -18.236 19.156 hybrid contribution -0.298 0.297 0.371 0.561 sum -6.130 0.921 -17.865 18.909 Atomic orbital electron populations 1.23829 0.95503 1.02286 1.00197 1.22729 0.95627 0.98256 1.00050 1.21610 0.88878 0.96197 0.92332 1.88071 1.44218 1.34968 1.60335 1.22234 0.93415 0.89182 0.98742 1.20126 0.82499 0.84349 0.83684 1.90769 1.71483 1.26984 1.49494 1.46021 1.32569 1.16632 1.42336 1.21824 0.86143 1.01069 0.88894 0.89118 1.21204 0.91549 0.98183 0.87757 1.43947 1.11979 1.53251 1.21356 1.19209 1.27517 1.02714 0.88478 0.91508 1.24993 1.01802 0.95699 0.96867 1.70030 1.40618 1.16220 1.27873 0.86305 0.78382 0.81008 0.81239 1.21356 1.21819 1.20348 1.20855 0.89901 0.93015 0.90557 1.21178 0.93037 0.94791 0.99028 1.22128 0.98493 0.99570 0.97626 1.22564 0.99369 0.82950 0.96576 1.87859 1.34659 1.16020 1.92207 1.22676 0.89397 0.93043 0.96626 1.22124 1.01599 0.97117 0.96355 1.21813 0.95348 0.99051 0.98506 0.87732 0.88438 0.86383 0.92208 0.92600 0.90516 0.90346 0.77288 0.96510 0.92327 0.93659 0.89005 0.96273 0.91313 0.90872 0.89727 0.93692 0.89652 0.93773 0.91289 0.89737 0.92722 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.31 29.02 0.42 -0.95 16 2 C -0.15 -1.36 9.89 -36.02 -0.36 -1.72 16 3 C 0.09 0.79 6.35 36.01 0.23 1.02 16 4 O -0.36 -4.73 9.86 -55.14 -0.54 -5.28 16 5 C 0.04 0.48 6.42 36.00 0.23 0.71 16 6 C 0.51 7.68 7.87 -10.99 -0.09 7.60 16 7 O -0.51 -10.54 16.16 -14.35 -0.23 -10.78 16 8 N -0.72 -9.68 5.08 -53.68 -0.27 -9.95 16 9 C 0.13 2.13 2.27 -67.80 -0.15 1.98 16 10 H 0.09 1.78 5.71 -51.93 -0.30 1.48 16 11 C 0.14 2.96 6.09 -3.71 -0.02 2.94 16 12 N -0.58 -14.13 2.50 -172.36 -0.43 -14.56 16 13 C -0.25 -6.82 9.59 -15.06 -0.14 -6.97 16 14 H 0.07 1.87 7.89 -52.48 -0.41 1.45 16 15 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 16 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 17 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.18 4.09 3.99 -3.75 -0.01 4.07 16 22 C -0.08 -1.36 0.51 -154.41 -0.08 -1.43 16 23 C -0.14 -2.12 4.92 -26.64 -0.13 -2.25 16 24 C 0.06 0.83 6.57 37.22 0.24 1.08 16 25 O -0.39 -6.13 10.76 -35.23 -0.38 -6.50 16 26 C 0.06 0.91 6.57 37.22 0.24 1.15 16 27 C -0.13 -2.41 4.47 -26.63 -0.12 -2.53 16 28 C -0.11 -1.64 3.64 -26.72 -0.10 -1.74 16 29 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.10 0.62 7.90 -52.49 -0.41 0.20 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 7.86 -51.93 -0.41 0.02 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.39 3.78 8.60 -40.82 -0.35 3.43 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 40 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.55 6.59 -51.92 -0.34 0.21 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.04 0.64 6.64 -51.93 -0.34 0.30 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.08 1.69 5.91 -51.93 -0.31 1.38 16 50 H 0.05 0.73 5.03 -51.93 -0.26 0.47 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -33.28 394.93 -8.74 -42.02 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.50 Total: 4.28 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 0.07 Total: 2.99 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.08 Total: -49.61 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.15 Total: -22.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.28 -8.74 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099572493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.002 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds