Wall clock time and date at job start Tue Mar 31 2020 22:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00000 * 2 1 4 4 O 1.42894 * 109.47173 * 135.00178 * 3 2 1 5 5 C 1.42902 * 114.00036 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47248 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99935 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00060 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00060 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.50126 * 34.92619 * 9 8 6 11 11 C 1.53197 * 109.49585 * 274.82175 * 9 8 6 12 12 N 1.46930 * 108.81515 * 185.39565 * 11 9 8 13 13 C 1.36932 * 120.64498 * 233.60440 * 12 11 9 14 14 H 1.08004 * 119.99482 * 27.64389 * 13 12 11 15 15 C 1.38810 * 120.00257 * 207.64762 * 13 12 11 16 16 N 1.31620 * 119.99964 * 17.33673 * 15 13 12 17 17 Si 1.86809 * 119.99869 * 197.33979 * 15 13 12 18 18 H 1.48503 * 109.47130 * 89.99972 * 17 15 13 19 19 H 1.48494 * 109.47017 * 209.99703 * 17 15 13 20 20 H 1.48501 * 109.47003 * 329.99944 * 17 15 13 21 21 C 1.46954 * 118.71685 * 53.62507 * 12 11 9 22 22 C 1.53092 * 108.75580 * 306.49693 * 21 12 11 23 23 C 1.53064 * 109.53348 * 174.72618 * 22 21 12 24 24 C 1.53120 * 109.16935 * 176.70013 * 23 22 21 25 25 O 1.42891 * 109.40961 * 302.53344 * 24 23 22 26 26 C 1.42906 * 114.13154 * 61.18441 * 25 24 23 27 27 C 1.53089 * 109.47190 * 294.44262 * 22 21 12 28 28 C 1.52951 * 109.48401 * 54.54546 * 22 21 12 29 29 H 1.07996 * 119.99880 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99911 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00303 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47140 * 255.00561 * 3 2 1 33 33 H 1.09000 * 109.47047 * 15.00101 * 3 2 1 34 34 H 1.09000 * 109.47247 * 299.99830 * 5 4 3 35 35 H 1.09002 * 109.47334 * 59.99574 * 5 4 3 36 36 H 0.97003 * 120.00173 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.57719 * 305.18906 * 11 9 8 38 38 H 1.08992 * 109.58112 * 65.59483 * 11 9 8 39 39 H 0.97003 * 119.99262 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.58904 * 186.71558 * 21 12 11 41 41 H 1.08999 * 109.70991 * 66.34740 * 21 12 11 42 42 H 1.09004 * 109.52399 * 296.60912 * 23 22 21 43 43 H 1.08998 * 109.52662 * 56.79639 * 23 22 21 44 44 H 1.09005 * 109.48176 * 182.54721 * 24 23 22 45 45 H 1.09007 * 109.47692 * 62.51511 * 24 23 22 46 46 H 1.08997 * 109.49077 * 178.81708 * 26 25 24 47 47 H 1.09003 * 109.48217 * 58.76475 * 26 25 24 48 48 H 1.08997 * 109.52444 * 303.14232 * 27 22 21 49 49 H 1.09003 * 109.52475 * 63.33135 * 27 22 21 50 50 H 1.09000 * 109.46111 * 178.72040 * 28 22 21 51 51 H 1.08993 * 109.45041 * 58.74176 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 6 4.9933 2.2573 2.0627 7 8 5.0885 1.2111 2.6688 8 7 5.8577 3.2610 2.3111 9 6 6.9134 3.0878 3.3119 10 1 7.2626 2.0553 3.2975 11 6 6.3608 3.4221 4.7011 12 7 7.4608 3.3696 5.6738 13 6 7.3614 2.5950 6.7987 14 1 6.7397 1.7119 6.7929 15 6 8.0596 2.9449 7.9462 16 7 8.5331 4.1655 8.0821 17 14 8.3271 1.6834 9.2978 18 1 9.5954 0.9523 9.0485 19 1 8.4033 2.3732 10.6106 20 1 7.1954 0.7220 9.3087 21 6 8.6694 4.1649 5.4165 22 6 9.1946 3.8242 4.0194 23 6 10.3760 4.7365 3.6803 24 6 10.9466 4.3345 2.3175 25 8 11.3334 2.9593 2.3516 26 6 10.2577 2.0563 2.6155 27 6 9.6598 2.3660 3.9906 28 6 8.0796 4.0261 2.9921 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 2.4754 1.4869 -0.9927 33 1 1.3855 2.1161 0.2660 34 1 4.3579 2.6409 0.0617 35 1 3.2677 3.2695 1.3204 36 1 5.7814 4.0980 1.8266 37 1 5.9293 4.4230 4.6913 38 1 5.5962 2.6951 4.9747 39 1 9.0213 4.4097 8.8839 40 1 9.4292 3.9262 6.1608 41 1 8.4286 5.2267 5.4676 42 1 10.0375 5.7720 3.6423 43 1 11.1475 4.6323 4.4432 44 1 11.8164 4.9513 2.0913 45 1 10.1878 4.4798 1.5485 46 1 10.6313 1.0324 2.6037 47 1 9.4897 2.1722 1.8507 48 1 10.4158 2.2096 4.7601 49 1 8.8100 1.7088 4.1747 50 1 8.4604 3.8054 1.9949 51 1 7.7350 5.0594 3.0288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099572493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:47 Heat of formation + Delta-G solvation = -105.954841 kcal Electronic energy + Delta-G solvation = -31106.534600 eV Core-core repulsion = 27006.289273 eV Total energy + Delta-G solvation = -4100.245327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63954 -40.56012 -38.86897 -38.23473 -35.94456 -35.11132 -34.75276 -33.19601 -32.01487 -31.26095 -28.91591 -28.61507 -27.31398 -26.40800 -24.56139 -24.53134 -23.44541 -22.08149 -21.47417 -20.89045 -19.46817 -18.68591 -18.16802 -17.84959 -17.35636 -17.31537 -16.88183 -16.60992 -16.47636 -16.10557 -15.86786 -15.68870 -15.39616 -15.23088 -15.10350 -14.83033 -14.77365 -14.23060 -14.04648 -13.86022 -13.23638 -13.16948 -13.12687 -13.03370 -13.00162 -12.78492 -12.68600 -12.34381 -12.17224 -12.10692 -11.93211 -11.88186 -11.83042 -11.61266 -11.14754 -11.02095 -10.95297 -10.73977 -10.61039 -10.26019 -10.25127 -10.10726 -8.68658 -7.92038 -5.36136 1.20100 1.40699 1.42706 1.51000 1.62624 1.92275 2.47037 3.03507 3.10180 3.21600 3.60148 3.69270 3.76966 3.93789 3.97699 4.08745 4.15548 4.18463 4.19881 4.24736 4.27074 4.32544 4.35146 4.39820 4.47837 4.52186 4.57111 4.62193 4.76430 4.77390 4.86935 4.90817 4.97480 4.98523 5.01013 5.12619 5.14688 5.27994 5.31294 5.43898 5.52842 5.57318 5.64500 5.66413 5.70828 5.74932 6.12710 6.33442 6.35461 6.64166 7.11809 7.32801 7.81588 8.30668 9.12913 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.003407 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.125379 B = 8217.309232 C =10214.777622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.084 3.916 4 O -0.401 6.401 5 C 0.051 3.949 6 C 0.503 3.497 7 O -0.579 6.579 8 N -0.704 5.704 9 C 0.142 3.858 10 H 0.063 0.937 11 C 0.144 3.856 12 N -0.600 5.600 13 C -0.261 4.261 14 H 0.050 0.950 15 C -0.039 4.039 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.193 3.807 22 C -0.072 4.072 23 C -0.136 4.136 24 C 0.062 3.938 25 O -0.400 6.400 26 C 0.069 3.931 27 C -0.130 4.130 28 C -0.097 4.097 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.251 0.749 40 H 0.051 0.949 41 H 0.003 0.997 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.056 0.944 50 H 0.088 0.912 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 3.156 -22.383 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.009 3.991 4 O -0.320 6.320 5 C -0.028 4.028 6 C 0.290 3.710 7 O -0.457 6.457 8 N -0.359 5.359 9 C 0.035 3.965 10 H 0.081 0.919 11 C 0.017 3.983 12 N -0.322 5.322 13 C -0.391 4.391 14 H 0.068 0.932 15 C -0.235 4.235 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.201 1.201 21 C 0.068 3.932 22 C -0.075 4.075 23 C -0.174 4.174 24 C -0.014 4.014 25 O -0.319 6.319 26 C -0.007 4.007 27 C -0.168 4.168 28 C -0.135 4.135 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.256 0.744 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.306 2.251 -21.727 22.735 hybrid contribution -0.255 -0.199 1.471 1.506 sum -6.561 2.052 -20.256 21.391 Atomic orbital electron populations 1.24052 0.95008 1.03494 0.97897 1.22819 0.96399 0.98221 1.02264 1.21800 0.88305 0.96467 0.92554 1.88021 1.45589 1.36497 1.61900 1.22333 0.92382 0.89273 0.98847 1.21102 0.82947 0.83306 0.83657 1.90749 1.73192 1.29662 1.52096 1.45745 1.31290 1.17638 1.41182 1.21285 0.87574 1.00103 0.87493 0.91893 1.21229 0.90250 0.97333 0.89517 1.44103 1.13623 1.53199 1.21318 1.19302 1.27250 1.02659 0.89890 0.93250 1.25592 1.01991 0.97221 0.98710 1.70147 1.41309 1.17450 1.28244 0.85433 0.78119 0.79046 0.78904 1.21156 1.21494 1.20138 1.20651 0.88213 0.91584 0.92781 1.21007 0.94931 0.94928 0.96608 1.22104 0.96762 0.99949 0.98589 1.22764 1.01223 0.81927 0.95461 1.87862 1.34921 1.17189 1.91972 1.22574 0.89747 0.93656 0.94734 1.22017 0.99847 0.97179 0.97730 1.21735 0.93327 0.99485 0.98965 0.86880 0.86871 0.87826 0.90128 0.90841 0.86421 0.87230 0.74361 0.95927 0.95592 0.93963 0.93011 0.97881 0.89444 0.92939 0.87187 0.91142 0.88912 0.91992 0.94184 0.92491 0.89408 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 14.31 67.79 0.97 -1.26 16 2 C -0.18 -3.12 9.89 25.65 0.25 -2.87 16 3 C 0.08 1.35 6.35 71.24 0.45 1.80 16 4 O -0.40 -10.04 9.86 -129.94 -1.28 -11.32 16 5 C 0.05 0.93 6.42 71.24 0.46 1.39 16 6 C 0.50 14.58 7.87 87.66 0.69 15.27 16 7 O -0.58 -24.48 16.16 16.01 0.26 -24.22 16 8 N -0.70 -17.29 5.08 -442.13 -2.25 -19.54 16 9 C 0.14 4.73 2.27 45.08 0.10 4.83 16 10 H 0.06 2.53 5.71 -2.39 -0.01 2.51 16 11 C 0.14 6.23 6.09 86.36 0.53 6.76 16 12 N -0.60 -30.44 2.50 -699.21 -1.75 -32.19 16 13 C -0.26 -15.05 9.59 84.03 0.81 -14.24 16 14 H 0.05 2.96 7.89 -2.91 -0.02 2.93 16 15 C -0.04 -2.24 4.91 84.86 0.42 -1.82 16 16 N -0.93 -54.87 11.19 21.65 0.24 -54.62 16 17 Si 0.96 46.90 29.59 68.60 2.03 48.93 16 18 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 C 0.19 8.96 3.99 86.32 0.34 9.30 16 22 C -0.07 -2.49 0.51 -52.12 -0.03 -2.52 16 23 C -0.14 -3.85 4.92 30.66 0.15 -3.70 16 24 C 0.06 1.43 6.57 72.02 0.47 1.90 16 25 O -0.40 -11.52 10.76 -148.98 -1.60 -13.13 16 26 C 0.07 2.01 6.57 72.02 0.47 2.49 16 27 C -0.13 -4.77 4.47 30.66 0.14 -4.63 16 28 C -0.10 -2.68 3.64 30.60 0.11 -2.57 16 29 H 0.11 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.11 1.13 7.90 -2.91 -0.02 1.11 16 31 H 0.10 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.07 0.88 7.86 -2.39 -0.02 0.86 16 34 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.42 6.25 8.60 -92.71 -0.80 5.46 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 39 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.07 1.30 6.59 -2.38 -0.02 1.29 16 46 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 47 H 0.06 1.60 6.64 -2.39 -0.02 1.58 16 48 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.06 2.40 5.91 -2.39 -0.01 2.38 16 50 H 0.09 1.92 5.03 -2.39 -0.01 1.91 16 51 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -79.59 394.93 2.11 -77.48 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.12 Total: 18.48 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 6.34 Total: 10.13 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.75 Total: -106.35 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -2.63 Total: -48.67 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -79.59 2.11 -77.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099572493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.476 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds