Wall clock time and date at job start Tue Mar 31 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50711 * 120.00070 * 2 1 4 4 O 1.42894 * 109.47134 * 134.99860 * 3 2 1 5 5 C 1.42900 * 114.00084 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47370 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98974 * 0.02562 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31609 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99530 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47204 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46916 * 119.99907 * 21 19 17 24 24 H 1.48499 * 109.47444 * 239.99888 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.08000 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00041 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00460 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46881 * 14.99548 * 3 2 1 32 32 H 1.09001 * 109.46737 * 254.99601 * 3 2 1 33 33 H 1.09000 * 109.46543 * 60.00360 * 5 4 3 34 34 H 1.08994 * 109.47251 * 300.00517 * 5 4 3 35 35 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 36 36 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 37 37 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 38 38 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 39 39 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 40 40 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 41 41 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 43 43 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 44 44 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 45 45 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 47 47 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 48 48 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 49 49 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 50 50 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 51 51 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9939 2.2570 2.0621 7 8 5.0890 1.2108 2.6682 8 7 5.8590 3.2604 2.3098 9 6 5.7632 4.5389 1.5876 10 6 7.1476 4.8815 1.0255 11 8 8.1123 4.8187 2.0788 12 6 8.2552 3.5237 2.6656 13 6 9.3481 3.5634 3.7351 14 6 10.6762 3.9701 3.0938 15 6 11.0540 2.9534 2.0146 16 7 12.3261 3.3425 1.4009 17 6 13.1197 2.3952 0.8108 18 1 12.8079 1.3613 0.7982 19 6 14.3247 2.7641 0.2288 20 7 14.7043 4.0242 0.2438 21 14 15.4075 1.4719 -0.5755 22 1 14.7592 0.1409 -0.4595 23 1 15.5957 1.8069 -2.0100 24 1 16.7282 1.4406 0.1028 25 6 9.9616 2.9172 0.9439 26 6 8.6332 2.5100 1.5845 27 6 6.9274 3.1099 3.3105 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3855 2.1162 0.2659 32 1 2.4756 1.4868 -0.9927 33 1 3.2689 3.2696 1.3192 34 1 4.3587 2.6396 0.0608 35 1 5.4402 5.3236 2.2717 36 1 5.0477 4.4469 0.7705 37 1 7.1315 5.8874 0.6062 38 1 7.4122 4.1665 0.2464 39 1 9.4500 2.5767 4.1870 40 1 9.0784 4.2884 4.5031 41 1 11.4546 3.9977 3.8564 42 1 10.5748 4.9574 2.6432 43 1 11.1543 1.9659 2.4649 44 1 12.6062 4.2711 1.4125 45 1 15.5466 4.2819 -0.1625 46 1 9.8605 3.9051 0.4946 47 1 10.2305 2.1934 0.1748 48 1 7.8547 2.4851 0.8219 49 1 8.7341 1.5215 2.0327 50 1 6.9842 2.0703 3.6333 51 1 6.7202 3.7503 4.1678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105464121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:11 Heat of formation + Delta-G solvation = -86.393818 kcal Electronic energy + Delta-G solvation = -30494.315347 eV Core-core repulsion = 26394.918250 eV Total energy + Delta-G solvation = -4099.397097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99565 -39.38604 -38.00682 -36.72952 -34.86669 -34.27822 -33.78134 -31.77725 -30.49458 -29.81365 -29.31433 -27.74463 -26.17369 -24.95471 -23.81494 -23.07041 -22.19784 -20.71777 -20.32330 -19.34626 -19.20104 -17.88176 -17.11106 -17.03345 -16.84054 -16.18507 -15.98502 -15.68857 -15.38079 -15.04567 -14.83610 -14.71204 -14.20807 -13.84166 -13.76198 -13.49952 -13.34009 -13.25816 -12.75583 -12.62557 -12.55093 -12.41937 -12.14852 -11.94880 -11.85341 -11.62205 -11.41192 -11.05266 -10.93647 -10.85164 -10.66951 -10.48321 -10.43370 -10.30107 -10.09857 -9.92933 -9.90558 -9.76326 -9.55643 -9.47704 -8.82923 -8.66086 -6.89509 -5.72284 -3.00105 1.67612 2.31515 2.39454 3.45265 3.45658 3.51242 3.53215 3.66235 4.13859 4.47880 4.51900 4.56389 4.62526 4.64120 4.69061 4.72882 4.80592 4.82499 4.90310 4.97418 5.00010 5.03658 5.32250 5.41959 5.42341 5.47821 5.53370 5.58110 5.63494 5.68600 5.82315 5.88084 5.90878 5.99294 6.12792 6.14296 6.17440 6.20821 6.30846 6.43826 6.56475 6.61495 6.69966 6.77811 7.04107 7.05545 7.18870 7.25345 7.75018 7.88773 8.46868 9.57823 10.17661 10.52426 11.50575 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002360 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.864506 B =11861.788807 C =12841.633370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.046 3.954 6 C 0.517 3.483 7 O -0.515 6.515 8 N -0.612 5.612 9 C 0.071 3.929 10 C 0.042 3.958 11 O -0.357 6.357 12 C 0.111 3.889 13 C -0.097 4.097 14 C -0.119 4.119 15 C 0.179 3.821 16 N -0.725 5.725 17 C -0.234 4.234 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.128 4.128 26 C -0.136 4.136 27 C 0.091 3.909 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.101 0.899 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.097 1.726 1.751 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.034 4.034 6 C 0.304 3.696 7 O -0.390 6.390 8 N -0.348 5.348 9 C -0.052 4.052 10 C -0.036 4.036 11 O -0.275 6.275 12 C 0.071 3.929 13 C -0.135 4.135 14 C -0.157 4.157 15 C 0.069 3.931 16 N -0.365 5.365 17 C -0.365 4.365 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.168 4.168 26 C -0.175 4.175 27 C -0.031 4.031 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.120 0.880 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.818 0.967 2.193 27.921 hybrid contribution 0.406 -0.230 -0.966 1.073 sum -27.412 0.737 1.227 27.449 Atomic orbital electron populations 1.23841 0.95472 1.02354 0.99994 1.22720 0.95623 0.98198 1.00237 1.21634 0.88662 0.96303 0.92384 1.88052 1.44320 1.34864 1.60492 1.22227 0.93153 0.89297 0.98726 1.20167 0.82264 0.83482 0.83670 1.90740 1.71908 1.26437 1.49885 1.48034 1.31424 1.14309 1.41036 1.22531 0.99636 0.85864 0.97180 1.22943 0.86801 1.03027 0.90782 1.88038 1.59074 1.29643 1.50740 1.21862 0.93203 0.83888 0.93983 1.21454 0.94052 1.02182 0.95849 1.21707 0.94803 1.00508 0.98666 1.20200 0.86200 0.95794 0.90885 1.42435 1.18143 1.08464 1.67441 1.19300 0.99060 0.90026 1.28143 0.91248 1.24729 0.98317 0.96161 1.01978 1.69672 1.23206 1.14920 1.50415 0.86153 0.80664 0.80735 0.78892 1.20612 1.21982 1.21932 1.22168 0.93415 1.01271 0.99989 1.22068 0.98895 0.98630 0.97864 1.22415 0.86009 1.04134 0.90524 0.88423 0.87642 0.86312 0.92542 0.91956 0.90239 0.90103 0.90152 0.89337 0.87693 0.91924 0.90483 0.91431 0.91829 0.91361 0.93894 0.78306 0.93670 0.92244 0.92303 0.92738 0.91305 0.88038 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.02 0.42 -0.65 16 2 C -0.15 -1.13 9.89 -36.02 -0.36 -1.49 16 3 C 0.09 0.64 6.35 36.01 0.23 0.87 16 4 O -0.36 -3.98 9.86 -55.14 -0.54 -4.52 16 5 C 0.05 0.40 4.79 36.01 0.17 0.57 16 6 C 0.52 6.30 7.79 -10.99 -0.09 6.22 16 7 O -0.52 -8.60 15.97 -14.35 -0.23 -8.83 16 8 N -0.61 -6.45 2.54 -172.27 -0.44 -6.89 16 9 C 0.07 0.53 6.54 -3.53 -0.02 0.51 16 10 C 0.04 0.40 6.60 37.31 0.25 0.65 16 11 O -0.36 -4.61 8.93 -35.23 -0.31 -4.93 16 12 C 0.11 1.42 0.68 -90.51 -0.06 1.36 16 13 C -0.10 -1.29 4.94 -26.75 -0.13 -1.42 16 14 C -0.12 -1.99 5.25 -26.73 -0.14 -2.13 16 15 C 0.18 3.59 2.77 -67.92 -0.19 3.40 16 16 N -0.72 -18.36 5.12 -53.42 -0.27 -18.63 16 17 C -0.23 -6.57 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 21 Si 0.90 22.70 29.55 -169.99 -5.02 17.67 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 C -0.13 -2.32 5.36 -26.73 -0.14 -2.47 16 26 C -0.14 -2.00 4.19 -26.76 -0.11 -2.11 16 27 C 0.09 1.06 5.30 -3.53 -0.02 1.04 16 28 H 0.10 0.46 7.90 -52.49 -0.41 0.04 16 29 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.46 8.01 -51.93 -0.42 0.05 16 34 H 0.08 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.41 6.06 -51.93 -0.31 0.09 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.66 6.26 -51.93 -0.33 0.33 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 43 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 44 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 47 H 0.06 1.18 8.14 -51.94 -0.42 0.76 16 48 H 0.05 0.77 6.11 -51.92 -0.32 0.45 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.10 1.32 7.07 -51.93 -0.37 0.95 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -34.97 400.29 -9.21 -44.18 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.70 Total: 6.58 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.44 Total: -2.92 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.01 Total: -53.26 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.09 Total: -18.27 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.97 -9.21 -44.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105464121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.216 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds