Wall clock time and date at job start Tue Mar 31 2020 22:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50711 * 120.00070 * 2 1 4 4 O 1.42894 * 109.47134 * 134.99860 * 3 2 1 5 5 C 1.42900 * 114.00084 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47370 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98974 * 0.02562 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31609 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99530 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47204 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46916 * 119.99907 * 21 19 17 24 24 H 1.48499 * 109.47444 * 239.99888 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.08000 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00041 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00460 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46881 * 14.99548 * 3 2 1 32 32 H 1.09001 * 109.46737 * 254.99601 * 3 2 1 33 33 H 1.09000 * 109.46543 * 60.00360 * 5 4 3 34 34 H 1.08994 * 109.47251 * 300.00517 * 5 4 3 35 35 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 36 36 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 37 37 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 38 38 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 39 39 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 40 40 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 41 41 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 43 43 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 44 44 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 45 45 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 47 47 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 48 48 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 49 49 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 50 50 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 51 51 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9939 2.2570 2.0621 7 8 5.0890 1.2108 2.6682 8 7 5.8590 3.2604 2.3098 9 6 5.7632 4.5389 1.5876 10 6 7.1476 4.8815 1.0255 11 8 8.1123 4.8187 2.0788 12 6 8.2552 3.5237 2.6656 13 6 9.3481 3.5634 3.7351 14 6 10.6762 3.9701 3.0938 15 6 11.0540 2.9534 2.0146 16 7 12.3261 3.3425 1.4009 17 6 13.1197 2.3952 0.8108 18 1 12.8079 1.3613 0.7982 19 6 14.3247 2.7641 0.2288 20 7 14.7043 4.0242 0.2438 21 14 15.4075 1.4719 -0.5755 22 1 14.7592 0.1409 -0.4595 23 1 15.5957 1.8069 -2.0100 24 1 16.7282 1.4406 0.1028 25 6 9.9616 2.9172 0.9439 26 6 8.6332 2.5100 1.5845 27 6 6.9274 3.1099 3.3105 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3855 2.1162 0.2659 32 1 2.4756 1.4868 -0.9927 33 1 3.2689 3.2696 1.3192 34 1 4.3587 2.6396 0.0608 35 1 5.4402 5.3236 2.2717 36 1 5.0477 4.4469 0.7705 37 1 7.1315 5.8874 0.6062 38 1 7.4122 4.1665 0.2464 39 1 9.4500 2.5767 4.1870 40 1 9.0784 4.2884 4.5031 41 1 11.4546 3.9977 3.8564 42 1 10.5748 4.9574 2.6432 43 1 11.1543 1.9659 2.4649 44 1 12.6062 4.2711 1.4125 45 1 15.5466 4.2819 -0.1625 46 1 9.8605 3.9051 0.4946 47 1 10.2305 2.1934 0.1748 48 1 7.8547 2.4851 0.8219 49 1 8.7341 1.5215 2.0327 50 1 6.9842 2.0703 3.6333 51 1 6.7202 3.7503 4.1678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105464121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:10 Heat of formation + Delta-G solvation = -109.269591 kcal Electronic energy + Delta-G solvation = -30495.307315 eV Core-core repulsion = 26394.918250 eV Total energy + Delta-G solvation = -4100.389065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93830 -40.34026 -38.76065 -38.03459 -35.93579 -35.35968 -34.78546 -33.36490 -31.83881 -31.26880 -30.06324 -28.86017 -27.01712 -26.09199 -24.97271 -24.50569 -23.46859 -21.87723 -21.04229 -20.60297 -20.03554 -19.14514 -18.59486 -17.80251 -17.53615 -17.20982 -16.95403 -16.67873 -16.52236 -16.07116 -16.00929 -15.56998 -15.48637 -15.28033 -14.91566 -14.65324 -14.59651 -14.07463 -13.97446 -13.80747 -13.31452 -13.27096 -13.15799 -13.14403 -13.10624 -12.88913 -12.81245 -12.59610 -12.21618 -12.08411 -12.01440 -11.89804 -11.82477 -11.67162 -11.37366 -11.26810 -11.01047 -10.96549 -10.77576 -10.67714 -10.27238 -9.55149 -8.99219 -7.94294 -5.22073 1.16776 1.45228 1.45674 1.46286 1.55778 1.66509 2.54980 2.77235 2.87051 3.37901 3.43760 3.56121 3.71761 3.79779 3.91591 3.96788 4.04148 4.09400 4.16832 4.19549 4.22142 4.27358 4.31613 4.37124 4.44327 4.51715 4.54455 4.59193 4.59512 4.60163 4.70105 4.76806 4.86552 4.92112 4.97601 5.00194 5.04125 5.10805 5.23680 5.28683 5.31981 5.48901 5.57254 5.64585 5.65013 5.69044 6.03956 6.27776 6.28447 6.30852 7.04014 7.34044 8.11796 8.35385 9.29411 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002360 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.864506 B =11861.788807 C =12841.633370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.047 3.953 6 C 0.510 3.490 7 O -0.573 6.573 8 N -0.610 5.610 9 C 0.073 3.927 10 C 0.033 3.967 11 O -0.374 6.374 12 C 0.119 3.881 13 C -0.093 4.093 14 C -0.107 4.107 15 C 0.172 3.828 16 N -0.737 5.737 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.113 4.113 26 C -0.126 4.126 27 C 0.095 3.905 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.051 0.949 47 H 0.032 0.968 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.084 0.916 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.763 2.647 1.533 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.317 6.317 5 C -0.032 4.032 6 C 0.299 3.701 7 O -0.451 6.451 8 N -0.344 5.344 9 C -0.048 4.048 10 C -0.044 4.044 11 O -0.293 6.293 12 C 0.079 3.921 13 C -0.131 4.131 14 C -0.145 4.145 15 C 0.064 3.936 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.153 4.153 26 C -0.165 4.165 27 C -0.027 4.027 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -30.532 1.900 1.970 30.654 hybrid contribution 1.161 -0.495 -0.913 1.557 sum -29.371 1.406 1.057 29.424 Atomic orbital electron populations 1.24058 0.94940 1.03558 0.97656 1.22796 0.96399 0.98115 1.02490 1.21801 0.88260 0.96652 0.92383 1.88008 1.45537 1.36438 1.61754 1.22386 0.92601 0.89615 0.98605 1.20931 0.82838 0.82712 0.83656 1.90713 1.73556 1.28706 1.52163 1.48148 1.30497 1.15181 1.40609 1.22763 0.99007 0.84645 0.98432 1.23212 0.87301 1.04149 0.89745 1.88016 1.60522 1.29051 1.51677 1.21675 0.93812 0.83572 0.93059 1.21448 0.92031 1.03300 0.96357 1.21545 0.96731 0.98894 0.97357 1.20451 0.84751 0.96304 0.92066 1.42636 1.19783 1.07471 1.67727 1.19621 0.99319 0.90535 1.27298 0.91180 1.25519 0.99907 0.98140 1.03377 1.69820 1.23569 1.16728 1.51853 0.85124 0.78631 0.78808 0.77538 1.19377 1.22014 1.21955 1.21896 0.94706 1.00041 0.98696 1.21956 0.96893 0.98990 0.98629 1.22251 0.85708 1.03463 0.91324 0.86727 0.86911 0.87953 0.90387 0.90677 0.86671 0.87563 0.88171 0.85788 0.85388 0.93257 0.89695 0.89035 0.92476 0.92220 0.94800 0.79625 0.94083 0.93056 0.94915 0.91898 0.91945 0.89733 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.31 67.78 0.97 -0.70 16 2 C -0.18 -2.58 9.89 25.65 0.25 -2.32 16 3 C 0.08 1.08 6.35 71.24 0.45 1.53 16 4 O -0.40 -8.25 9.86 -129.94 -1.28 -9.53 16 5 C 0.05 0.67 4.79 71.24 0.34 1.01 16 6 C 0.51 11.57 7.79 87.66 0.68 12.26 16 7 O -0.57 -19.20 15.97 16.00 0.26 -18.94 16 8 N -0.61 -11.34 2.54 -817.32 -2.08 -13.41 16 9 C 0.07 0.79 6.54 86.35 0.56 1.36 16 10 C 0.03 0.54 6.60 72.08 0.48 1.01 16 11 O -0.37 -8.89 8.93 -148.98 -1.33 -10.23 16 12 C 0.12 2.90 0.68 -10.72 -0.01 2.89 16 13 C -0.09 -2.35 4.94 30.58 0.15 -2.19 16 14 C -0.11 -3.58 5.25 30.59 0.16 -3.42 16 15 C 0.17 7.06 2.77 44.99 0.12 7.18 16 16 N -0.74 -38.41 5.12 -322.92 -1.65 -40.06 16 17 C -0.24 -13.49 9.93 84.03 0.83 -12.66 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 20 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 21 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 C -0.11 -4.19 5.36 30.59 0.16 -4.03 16 26 C -0.13 -3.67 4.19 30.58 0.13 -3.54 16 27 C 0.10 2.05 5.30 86.36 0.46 2.51 16 28 H 0.11 0.75 7.90 -2.91 -0.02 0.72 16 29 H 0.11 0.92 8.06 -2.91 -0.02 0.89 16 30 H 0.10 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.08 0.62 7.86 -2.39 -0.02 0.60 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 0.80 8.01 -2.39 -0.02 0.78 16 34 H 0.11 0.95 7.66 -2.39 -0.02 0.93 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.48 6.06 -2.39 -0.01 0.47 16 37 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 0.94 6.26 -2.39 -0.01 0.92 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.10 7.70 -2.39 -0.02 2.09 16 43 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 44 H 0.37 20.79 7.80 -92.71 -0.72 20.07 16 45 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 46 H 0.05 1.97 7.70 -2.39 -0.02 1.95 16 47 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.06 1.73 6.11 -2.38 -0.01 1.71 16 49 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.08 2.15 7.07 -2.39 -0.02 2.13 16 51 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -79.23 400.29 2.63 -76.60 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.19 Total: 29.49 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 6.22 Total: -3.20 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.45 Total: -113.55 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -2.36 Total: -38.70 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.23 2.63 -76.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105464121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.672 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds