Wall clock time and date at job start Tue Mar 31 2020 22:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00096 * 2 1 4 4 O 1.42905 * 109.47319 * 134.99770 * 3 2 1 5 5 C 1.42892 * 114.00263 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47129 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00078 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00041 * 179.97438 * 6 5 4 9 9 C 1.48195 * 127.79806 * 359.97438 * 8 6 5 10 10 C 1.54516 * 104.63274 * 140.72285 * 9 8 6 11 11 H 1.09002 * 110.37660 * 264.84339 * 10 9 8 12 12 C 1.53002 * 110.37355 * 142.60699 * 10 9 8 13 13 N 1.46506 * 109.47042 * 67.96395 * 12 10 9 14 14 C 1.36929 * 119.99807 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00341 * 0.27647 * 14 13 12 16 16 C 1.38815 * 120.00031 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00489 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00506 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00336 * 18 16 14 22 22 C 1.53772 * 104.87683 * 23.72590 * 10 9 8 23 23 C 1.48254 * 127.79822 * 179.97438 * 8 6 5 24 24 C 1.52594 * 110.26891 * 241.00370 * 22 10 9 25 25 C 1.53201 * 109.20350 * 182.30075 * 24 22 10 26 26 O 1.42905 * 109.33928 * 56.67490 * 25 24 22 27 27 C 1.42910 * 114.21649 * 298.38377 * 26 25 24 28 28 C 1.52592 * 110.27988 * 118.84871 * 22 10 9 29 29 H 1.08001 * 120.00168 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00386 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99641 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47330 * 14.99922 * 3 2 1 33 33 H 1.08997 * 109.47485 * 254.99761 * 3 2 1 34 34 H 1.09004 * 109.47252 * 60.00151 * 5 4 3 35 35 H 1.08997 * 109.47529 * 300.00099 * 5 4 3 36 36 H 1.08999 * 110.40106 * 21.92768 * 9 8 6 37 37 H 1.08999 * 110.40230 * 259.51308 * 9 8 6 38 38 H 1.08992 * 109.46974 * 307.95892 * 12 10 9 39 39 H 1.09000 * 109.46986 * 187.95956 * 12 10 9 40 40 H 0.96999 * 120.00076 * 359.97438 * 13 12 10 41 41 H 0.97000 * 120.00284 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.43196 * 337.88796 * 23 8 6 43 43 H 1.09010 * 110.42502 * 100.24993 * 23 8 6 44 44 H 1.09005 * 109.51384 * 302.21954 * 24 22 10 45 45 H 1.09004 * 109.51300 * 62.37791 * 24 22 10 46 46 H 1.08996 * 109.49104 * 296.71161 * 25 24 22 47 47 H 1.09005 * 109.51209 * 176.64980 * 25 24 22 48 48 H 1.09005 * 109.49640 * 301.65894 * 27 26 25 49 49 H 1.09003 * 109.51627 * 181.59327 * 27 26 25 50 50 H 1.08998 * 109.51463 * 297.61296 * 28 22 10 51 51 H 1.09000 * 109.51809 * 57.72552 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4348 1.0321 6 6 4.9939 2.2567 2.0622 7 8 5.0890 1.2106 2.6683 8 7 5.8597 3.2598 2.3092 9 6 5.9037 4.5984 1.6749 10 6 6.2496 5.5659 2.8289 11 1 5.3406 5.9985 3.2469 12 6 7.1859 6.6707 2.3351 13 7 6.4662 7.5390 1.4000 14 6 7.1053 8.6048 0.8251 15 1 8.1413 8.8028 1.0575 16 6 6.4236 9.4272 -0.0614 17 7 5.1627 9.1828 -0.3489 18 14 7.2958 10.8808 -0.8462 19 1 7.9277 10.4504 -2.1193 20 1 6.3120 11.9585 -1.1215 21 1 8.3409 11.3890 0.0782 22 6 6.9583 4.6925 3.8774 23 6 6.9829 3.2730 3.2768 24 6 6.1750 4.6984 5.1870 25 6 6.9309 3.8691 6.2300 26 8 8.2517 4.3924 6.3840 27 6 9.0444 4.3419 5.1959 28 6 8.3816 5.1922 4.1074 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4756 1.4867 -0.9926 34 1 3.2690 3.2695 1.3192 35 1 4.3588 2.6395 0.0609 36 1 4.9328 4.8484 1.2473 37 1 6.6773 4.6300 0.9076 38 1 8.0416 6.2229 1.8300 39 1 7.5325 7.2597 3.1843 40 1 5.5369 7.3589 1.1881 41 1 4.6861 9.7577 -0.9681 42 1 6.8224 2.5281 4.0562 43 1 7.9278 3.0896 2.7652 44 1 6.0692 5.7231 5.5434 45 1 5.1881 4.2655 5.0229 46 1 6.9866 2.8321 5.8993 47 1 6.4064 3.9188 7.1843 48 1 9.1224 3.3098 4.8542 49 1 10.0404 4.7318 5.4058 50 1 8.9512 5.1075 3.1819 51 1 8.3548 6.2347 4.4244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186309646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:03 Heat of formation + Delta-G solvation = -84.695046 kcal Electronic energy + Delta-G solvation = -30611.554182 eV Core-core repulsion = 26512.230749 eV Total energy + Delta-G solvation = -4099.323433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98937 -39.31288 -37.93345 -37.19900 -34.70492 -34.06913 -33.48549 -31.76411 -31.16100 -29.39963 -29.06705 -26.71929 -25.71738 -25.28939 -24.23546 -23.78694 -22.31416 -20.82133 -20.32434 -19.35585 -18.54183 -17.60198 -17.05676 -16.66467 -16.55907 -16.10490 -15.84764 -15.80745 -15.64486 -14.93238 -14.84435 -14.67645 -14.48783 -14.09646 -13.86971 -13.41769 -13.34579 -13.08225 -12.84685 -12.56842 -12.44417 -12.34013 -12.22159 -12.06600 -11.85647 -11.57076 -11.30068 -11.22673 -11.14378 -11.03646 -10.86370 -10.71405 -10.24953 -10.20185 -10.12807 -10.04046 -9.79638 -9.76067 -9.56982 -9.41317 -8.94469 -8.72507 -7.01280 -5.85288 -3.14046 1.85376 2.57420 2.64553 3.38069 3.44074 3.45171 3.76183 3.83736 4.29610 4.44829 4.56101 4.58522 4.63245 4.79212 4.85424 4.96879 4.99285 5.02280 5.03738 5.09122 5.15268 5.16260 5.26148 5.28877 5.34577 5.43037 5.49513 5.52221 5.58101 5.61878 5.65155 5.67954 5.79400 5.87320 5.90708 5.98620 6.03161 6.11209 6.23088 6.27634 6.28932 6.33399 6.37519 6.65620 6.73133 6.86088 7.15030 7.49831 7.62678 8.12852 8.33432 9.45170 10.00946 10.35299 11.37467 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006816 B = 0.003742 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4106.712254 B = 7481.119825 C =11095.442548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.362 6.362 5 C 0.048 3.952 6 C 0.538 3.462 7 O -0.529 6.529 8 N -0.622 5.622 9 C 0.106 3.894 10 C -0.097 4.097 11 H 0.085 0.915 12 C 0.162 3.838 13 N -0.733 5.733 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.064 4.064 23 C 0.115 3.885 24 C -0.139 4.139 25 C 0.059 3.941 26 O -0.383 6.383 27 C 0.058 3.942 28 C -0.145 4.145 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.028 0.972 40 H 0.382 0.618 41 H 0.255 0.745 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -14.726 5.901 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.280 6.280 5 C -0.032 4.032 6 C 0.326 3.674 7 O -0.405 6.405 8 N -0.358 5.358 9 C -0.016 4.016 10 C -0.117 4.117 11 H 0.103 0.897 12 C 0.034 3.966 13 N -0.377 5.377 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.065 4.065 23 C -0.007 4.007 24 C -0.177 4.177 25 C -0.017 4.017 26 O -0.302 6.302 27 C -0.019 4.019 28 C -0.183 4.183 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.631 -15.359 6.433 16.732 hybrid contribution -0.122 1.079 -1.187 1.609 sum -1.753 -14.281 5.246 15.314 Atomic orbital electron populations 1.23845 0.95510 1.02330 1.00119 1.22711 0.95602 0.98143 1.00157 1.21635 0.88778 0.96210 0.92480 1.87997 1.44370 1.35086 1.60561 1.22173 0.93124 0.89132 0.98790 1.19762 0.81531 0.82607 0.83521 1.90711 1.72603 1.26541 1.50614 1.48973 1.30785 1.14937 1.41061 1.22655 1.03065 0.79895 0.95970 1.22302 1.00080 0.95280 0.94009 0.89691 1.20851 0.93158 0.89766 0.92807 1.42379 1.12590 1.31287 1.51481 1.19197 0.95290 1.03245 1.19359 0.91170 1.24721 0.96087 0.99624 1.00369 1.69641 1.08988 1.40544 1.39015 0.86208 0.78383 0.82365 0.79339 1.21721 1.21773 1.20747 1.21112 0.96017 0.94366 0.95052 1.22513 0.89178 0.96959 0.92084 1.22149 0.99028 1.02021 0.94468 1.22646 0.83388 0.96199 0.99486 1.87908 1.24600 1.83921 1.33774 1.22683 0.94656 0.98911 0.85602 1.22309 0.94639 1.01512 0.99809 0.88316 0.87767 0.86491 0.92351 0.91905 0.89907 0.89911 0.90041 0.89881 0.95829 0.95396 0.78424 0.93497 0.90004 0.90885 0.90321 0.90915 0.93152 0.88988 0.93406 0.88825 0.89894 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.31 29.01 0.42 -1.02 16 2 C -0.15 -1.41 9.89 -36.03 -0.36 -1.77 16 3 C 0.09 0.87 6.35 36.00 0.23 1.10 16 4 O -0.36 -4.94 9.86 -55.14 -0.54 -5.48 16 5 C 0.05 0.58 5.40 36.01 0.19 0.78 16 6 C 0.54 7.99 7.99 -10.98 -0.09 7.91 16 7 O -0.53 -9.76 16.77 -14.35 -0.24 -10.00 16 8 N -0.62 -8.30 3.32 -169.24 -0.56 -8.86 16 9 C 0.11 1.43 6.22 -2.31 -0.01 1.42 16 10 C -0.10 -1.36 2.75 -89.42 -0.25 -1.61 16 11 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 12 C 0.16 2.82 4.39 -4.04 -0.02 2.81 16 13 N -0.73 -16.78 5.46 -59.91 -0.33 -17.11 16 14 C -0.24 -6.29 9.99 -15.06 -0.15 -6.44 16 15 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 18 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.06 -0.76 0.69 -153.92 -0.11 -0.87 16 23 C 0.11 1.41 5.13 -2.47 -0.01 1.40 16 24 C -0.14 -1.60 4.68 -26.84 -0.13 -1.73 16 25 C 0.06 0.65 6.64 37.26 0.25 0.89 16 26 O -0.38 -4.69 10.75 -35.23 -0.38 -5.07 16 27 C 0.06 0.61 6.65 37.26 0.25 0.85 16 28 C -0.14 -1.64 3.63 -26.84 -0.10 -1.74 16 29 H 0.10 0.70 7.90 -52.49 -0.41 0.28 16 30 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.07 7.31 -51.93 -0.38 0.69 16 37 H 0.08 1.18 7.78 -51.93 -0.40 0.77 16 38 H 0.02 0.42 6.93 -51.93 -0.36 0.05 16 39 H 0.03 0.51 6.51 -51.93 -0.34 0.17 16 40 H 0.38 9.17 7.56 -40.82 -0.31 8.86 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.08 1.05 5.94 -51.93 -0.31 0.74 16 43 H 0.07 0.84 7.79 -51.92 -0.40 0.44 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.54 6.53 -51.93 -0.34 0.20 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.46 7.55 -51.93 -0.39 0.07 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.08 0.91 6.93 -51.93 -0.36 0.55 16 51 H 0.09 1.10 6.55 -51.93 -0.34 0.76 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -32.29 400.21 -8.79 -41.09 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.50 Total: 7.34 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 0.02 Total: 1.56 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.16 Total: -51.99 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.16 Total: -20.55 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.29 -8.79 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186309646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.609 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds