Wall clock time and date at job start Tue Mar 31 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00096 * 2 1 4 4 O 1.42905 * 109.47319 * 134.99770 * 3 2 1 5 5 C 1.42892 * 114.00263 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47129 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00078 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00041 * 179.97438 * 6 5 4 9 9 C 1.48195 * 127.79806 * 359.97438 * 8 6 5 10 10 C 1.54516 * 104.63274 * 140.72285 * 9 8 6 11 11 H 1.09002 * 110.37660 * 264.84339 * 10 9 8 12 12 C 1.53002 * 110.37355 * 142.60699 * 10 9 8 13 13 N 1.46506 * 109.47042 * 67.96395 * 12 10 9 14 14 C 1.36929 * 119.99807 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00341 * 0.27647 * 14 13 12 16 16 C 1.38815 * 120.00031 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00489 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00506 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00336 * 18 16 14 22 22 C 1.53772 * 104.87683 * 23.72590 * 10 9 8 23 23 C 1.48254 * 127.79822 * 179.97438 * 8 6 5 24 24 C 1.52594 * 110.26891 * 241.00370 * 22 10 9 25 25 C 1.53201 * 109.20350 * 182.30075 * 24 22 10 26 26 O 1.42905 * 109.33928 * 56.67490 * 25 24 22 27 27 C 1.42910 * 114.21649 * 298.38377 * 26 25 24 28 28 C 1.52592 * 110.27988 * 118.84871 * 22 10 9 29 29 H 1.08001 * 120.00168 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00386 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99641 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47330 * 14.99922 * 3 2 1 33 33 H 1.08997 * 109.47485 * 254.99761 * 3 2 1 34 34 H 1.09004 * 109.47252 * 60.00151 * 5 4 3 35 35 H 1.08997 * 109.47529 * 300.00099 * 5 4 3 36 36 H 1.08999 * 110.40106 * 21.92768 * 9 8 6 37 37 H 1.08999 * 110.40230 * 259.51308 * 9 8 6 38 38 H 1.08992 * 109.46974 * 307.95892 * 12 10 9 39 39 H 1.09000 * 109.46986 * 187.95956 * 12 10 9 40 40 H 0.96999 * 120.00076 * 359.97438 * 13 12 10 41 41 H 0.97000 * 120.00284 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.43196 * 337.88796 * 23 8 6 43 43 H 1.09010 * 110.42502 * 100.24993 * 23 8 6 44 44 H 1.09005 * 109.51384 * 302.21954 * 24 22 10 45 45 H 1.09004 * 109.51300 * 62.37791 * 24 22 10 46 46 H 1.08996 * 109.49104 * 296.71161 * 25 24 22 47 47 H 1.09005 * 109.51209 * 176.64980 * 25 24 22 48 48 H 1.09005 * 109.49640 * 301.65894 * 27 26 25 49 49 H 1.09003 * 109.51627 * 181.59327 * 27 26 25 50 50 H 1.08998 * 109.51463 * 297.61296 * 28 22 10 51 51 H 1.09000 * 109.51809 * 57.72552 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4348 1.0321 6 6 4.9939 2.2567 2.0622 7 8 5.0890 1.2106 2.6683 8 7 5.8597 3.2598 2.3092 9 6 5.9037 4.5984 1.6749 10 6 6.2496 5.5659 2.8289 11 1 5.3406 5.9985 3.2469 12 6 7.1859 6.6707 2.3351 13 7 6.4662 7.5390 1.4000 14 6 7.1053 8.6048 0.8251 15 1 8.1413 8.8028 1.0575 16 6 6.4236 9.4272 -0.0614 17 7 5.1627 9.1828 -0.3489 18 14 7.2958 10.8808 -0.8462 19 1 7.9277 10.4504 -2.1193 20 1 6.3120 11.9585 -1.1215 21 1 8.3409 11.3890 0.0782 22 6 6.9583 4.6925 3.8774 23 6 6.9829 3.2730 3.2768 24 6 6.1750 4.6984 5.1870 25 6 6.9309 3.8691 6.2300 26 8 8.2517 4.3924 6.3840 27 6 9.0444 4.3419 5.1959 28 6 8.3816 5.1922 4.1074 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4756 1.4867 -0.9926 34 1 3.2690 3.2695 1.3192 35 1 4.3588 2.6395 0.0609 36 1 4.9328 4.8484 1.2473 37 1 6.6773 4.6300 0.9076 38 1 8.0416 6.2229 1.8300 39 1 7.5325 7.2597 3.1843 40 1 5.5369 7.3589 1.1881 41 1 4.6861 9.7577 -0.9681 42 1 6.8224 2.5281 4.0562 43 1 7.9278 3.0896 2.7652 44 1 6.0692 5.7231 5.5434 45 1 5.1881 4.2655 5.0229 46 1 6.9866 2.8321 5.8993 47 1 6.4064 3.9188 7.1843 48 1 9.1224 3.3098 4.8542 49 1 10.0404 4.7318 5.4058 50 1 8.9512 5.1075 3.1819 51 1 8.3548 6.2347 4.4244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186309646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:02 Heat of formation + Delta-G solvation = -105.032147 kcal Electronic energy + Delta-G solvation = -30612.436064 eV Core-core repulsion = 26512.230749 eV Total energy + Delta-G solvation = -4100.205316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05177 -40.37199 -38.87071 -38.30811 -36.36332 -34.82699 -34.63121 -33.37193 -32.13176 -30.80654 -30.15066 -27.61925 -27.07101 -26.31200 -25.42005 -24.94927 -23.65851 -21.99314 -21.10831 -20.39013 -19.71187 -18.99670 -18.45118 -17.62499 -17.55617 -17.10446 -16.86924 -16.83148 -16.67378 -16.36266 -15.90046 -15.74142 -15.59792 -15.21230 -15.16304 -14.90672 -14.67361 -14.13080 -13.87868 -13.70274 -13.57090 -13.29229 -13.19031 -13.11168 -12.99158 -12.92627 -12.76131 -12.53051 -12.32260 -12.19822 -12.10861 -11.92281 -11.87107 -11.65421 -11.24121 -11.12644 -11.06819 -10.93119 -10.81062 -10.36711 -10.29681 -9.86212 -8.92568 -7.91069 -5.17849 1.14803 1.42893 1.51011 1.51674 1.59375 1.64567 2.59119 2.84116 2.99167 3.27428 3.40717 3.45798 3.55552 3.62735 3.99161 4.02261 4.07063 4.08460 4.10264 4.12560 4.19355 4.20111 4.21701 4.29071 4.40698 4.41477 4.46052 4.58084 4.58450 4.63403 4.68997 4.73940 4.81518 4.83394 4.87574 4.96449 4.99226 5.04584 5.12501 5.16979 5.19414 5.41210 5.44252 5.56393 5.63802 5.67545 6.01836 6.29154 6.31779 6.37905 6.99092 7.39563 8.14853 8.37846 9.32095 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006816 B = 0.003742 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4106.712254 B = 7481.119825 C =11095.442548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.175 4.175 3 C 0.081 3.919 4 O -0.390 6.390 5 C 0.049 3.951 6 C 0.534 3.466 7 O -0.570 6.570 8 N -0.616 5.616 9 C 0.112 3.888 10 C -0.089 4.089 11 H 0.077 0.923 12 C 0.166 3.834 13 N -0.743 5.743 14 C -0.238 4.238 15 H 0.075 0.925 16 C -0.071 4.071 17 N -0.966 5.966 18 Si 0.964 3.036 19 H -0.289 1.289 20 H -0.299 1.299 21 H -0.272 1.272 22 C -0.055 4.055 23 C 0.114 3.886 24 C -0.135 4.135 25 C 0.061 3.939 26 O -0.398 6.398 27 C 0.058 3.942 28 C -0.142 4.142 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.027 0.973 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.105 0.895 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -14.907 6.031 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C 0.005 3.995 4 O -0.309 6.309 5 C -0.031 4.031 6 C 0.324 3.676 7 O -0.449 6.449 8 N -0.350 5.350 9 C -0.010 4.010 10 C -0.108 4.108 11 H 0.095 0.905 12 C 0.040 3.960 13 N -0.386 5.386 14 C -0.370 4.370 15 H 0.093 0.907 16 C -0.263 4.263 17 N -0.617 5.617 18 Si 0.794 3.206 19 H -0.216 1.216 20 H -0.226 1.226 21 H -0.197 1.197 22 C -0.056 4.056 23 C -0.008 4.008 24 C -0.173 4.173 25 C -0.016 4.016 26 O -0.318 6.318 27 C -0.019 4.019 28 C -0.180 4.180 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.123 0.877 48 H 0.077 0.923 49 H 0.126 0.874 50 H 0.107 0.893 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.098 -15.540 6.583 16.912 hybrid contribution -0.270 1.100 -1.177 1.634 sum -1.368 -14.440 5.406 15.479 Atomic orbital electron populations 1.24074 0.94975 1.03551 0.97632 1.22750 0.96288 0.97767 1.02492 1.21825 0.88304 0.96988 0.92363 1.87964 1.45377 1.35826 1.61755 1.22242 0.92733 0.89329 0.98763 1.20257 0.81843 0.82067 0.83478 1.90685 1.73778 1.28110 1.52327 1.48965 1.30660 1.14548 1.40845 1.22568 1.03264 0.79661 0.95526 1.22142 0.99234 0.94660 0.94804 0.90451 1.20941 0.93566 0.89867 0.91641 1.42558 1.12508 1.31382 1.52130 1.19566 0.95492 1.03542 1.18408 0.90736 1.25418 0.96840 1.02329 1.01743 1.69773 1.10253 1.41572 1.40055 0.85275 0.77331 0.79425 0.78542 1.21579 1.22592 1.19730 1.21039 0.96403 0.93615 0.94574 1.22606 0.89359 0.96846 0.92008 1.22102 0.98946 1.01820 0.94439 1.22692 0.83009 0.95995 0.99869 1.87895 1.25102 1.84091 1.34663 1.22786 0.94926 0.99398 0.84750 1.22271 0.94207 1.00967 1.00523 0.87316 0.86291 0.87126 0.91255 0.90860 0.88298 0.88160 0.89567 0.90183 0.95002 0.95487 0.79292 0.94150 0.90307 0.89715 0.90937 0.91227 0.92868 0.87739 0.92308 0.87364 0.89322 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 14.31 67.78 0.97 -1.40 16 2 C -0.17 -3.23 9.89 25.64 0.25 -2.97 16 3 C 0.08 1.58 6.35 71.23 0.45 2.03 16 4 O -0.39 -10.51 9.86 -129.94 -1.28 -11.79 16 5 C 0.05 1.15 5.40 71.24 0.38 1.53 16 6 C 0.53 15.59 7.99 87.66 0.70 16.29 16 7 O -0.57 -21.08 16.77 16.01 0.27 -20.81 16 8 N -0.62 -15.80 3.32 -807.73 -2.68 -18.49 16 9 C 0.11 2.89 6.22 86.57 0.54 3.43 16 10 C -0.09 -2.41 2.75 -10.02 -0.03 -2.43 16 11 H 0.08 2.25 7.70 -2.39 -0.02 2.24 16 12 C 0.17 5.61 4.39 86.38 0.38 5.99 16 13 N -0.74 -33.56 5.46 -343.45 -1.87 -35.44 16 14 C -0.24 -12.30 9.99 84.04 0.84 -11.46 16 15 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 17 N -0.97 -55.55 13.06 21.65 0.28 -55.26 16 18 Si 0.96 44.03 29.55 68.60 2.03 46.06 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.05 -1.24 0.69 -51.80 -0.04 -1.27 16 23 C 0.11 2.64 5.13 86.43 0.44 3.08 16 24 C -0.14 -2.97 4.68 30.53 0.14 -2.83 16 25 C 0.06 1.23 6.64 72.05 0.48 1.71 16 26 O -0.40 -9.06 10.75 -148.98 -1.60 -10.67 16 27 C 0.06 1.08 6.65 72.05 0.48 1.56 16 28 C -0.14 -2.98 3.63 30.53 0.11 -2.87 16 29 H 0.11 1.32 7.90 -2.91 -0.02 1.30 16 30 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.11 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.07 1.17 7.86 -2.39 -0.02 1.15 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.99 7.95 -2.38 -0.02 1.97 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.16 7.31 -2.39 -0.02 2.14 16 37 H 0.08 2.16 7.78 -2.39 -0.02 2.14 16 38 H 0.03 1.06 6.93 -2.39 -0.02 1.04 16 39 H 0.03 0.95 6.51 -2.39 -0.02 0.93 16 40 H 0.37 17.93 7.56 -92.71 -0.70 17.23 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.08 1.93 5.94 -2.39 -0.01 1.92 16 43 H 0.08 1.79 7.79 -2.38 -0.02 1.77 16 44 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.05 1.06 6.53 -2.39 -0.02 1.04 16 47 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.06 0.99 7.55 -2.38 -0.02 0.97 16 49 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.09 1.76 6.93 -2.39 -0.02 1.74 16 51 H 0.07 1.79 6.55 -2.39 -0.02 1.77 16 Total: -1.00 -68.27 400.21 1.93 -66.34 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.22 Total: 33.03 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.58 Total: 7.03 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.27 Total: -109.19 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -2.61 Total: -43.27 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.27 1.93 -66.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186309646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.696 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds