Wall clock time and date at job start Tue Mar 31 2020 22:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99747 * 2 1 4 4 O 1.42902 * 109.46933 * 134.99982 * 3 2 1 5 5 C 1.42896 * 113.99843 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47153 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00225 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00099 * 180.02562 * 6 5 4 9 9 C 1.48186 * 127.79704 * 0.02562 * 8 6 5 10 10 C 1.54520 * 104.63831 * 219.25751 * 9 8 6 11 11 H 1.08996 * 110.37472 * 95.04864 * 10 9 8 12 12 C 1.52997 * 110.47437 * 217.35408 * 10 9 8 13 13 N 1.46504 * 109.46938 * 290.41381 * 12 10 9 14 14 C 1.36937 * 119.99796 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00369 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99869 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00234 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99890 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47276 * 90.00467 * 18 16 14 20 20 H 1.48505 * 109.46676 * 210.00053 * 18 16 14 21 21 H 1.48492 * 109.47032 * 329.99753 * 18 16 14 22 22 C 1.53781 * 104.78062 * 336.22814 * 10 9 8 23 23 C 1.48257 * 127.80033 * 179.97438 * 8 6 5 24 24 C 1.52590 * 110.26505 * 119.03236 * 22 10 9 25 25 C 1.53204 * 109.24379 * 177.74290 * 24 22 10 26 26 O 1.42918 * 109.33413 * 303.28901 * 25 24 22 27 27 C 1.42906 * 114.21939 * 61.61454 * 26 25 24 28 28 C 1.52706 * 110.35668 * 241.16573 * 22 10 9 29 29 H 1.08001 * 119.99704 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99921 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00190 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47398 * 15.00133 * 3 2 1 33 33 H 1.09004 * 109.46842 * 254.99750 * 3 2 1 34 34 H 1.09008 * 109.47256 * 59.99861 * 5 4 3 35 35 H 1.09000 * 109.47499 * 300.00017 * 5 4 3 36 36 H 1.09006 * 110.40347 * 100.47150 * 9 8 6 37 37 H 1.08996 * 110.50900 * 338.10005 * 9 8 6 38 38 H 1.09004 * 109.47316 * 50.41085 * 12 10 9 39 39 H 1.08996 * 109.47175 * 170.41465 * 12 10 9 40 40 H 0.97001 * 120.00207 * 359.97438 * 13 12 10 41 41 H 0.97000 * 120.00411 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.42462 * 22.13441 * 23 8 6 43 43 H 1.08994 * 110.43067 * 259.64347 * 23 8 6 44 44 H 1.09002 * 109.51671 * 57.79905 * 24 22 10 45 45 H 1.09001 * 109.51643 * 297.68867 * 24 22 10 46 46 H 1.08999 * 109.49293 * 63.24211 * 25 24 22 47 47 H 1.08998 * 109.49534 * 183.29581 * 25 24 22 48 48 H 1.09003 * 109.48872 * 58.35494 * 27 26 25 49 49 H 1.09004 * 109.49316 * 178.40118 * 27 26 25 50 50 H 1.09000 * 109.50666 * 62.40160 * 28 22 10 51 51 H 1.09006 * 109.54510 * 302.28151 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9938 2.2570 2.0621 7 8 5.0890 1.2108 2.6682 8 7 5.8589 3.2604 2.3098 9 6 5.9015 4.5998 1.6772 10 6 7.4066 4.8975 1.4941 11 1 7.7299 4.6162 0.4919 12 6 7.6942 6.3783 1.7495 13 7 7.1159 7.1815 0.6693 14 6 7.2480 8.5444 0.6833 15 1 7.7781 9.0273 1.4909 16 6 6.6996 9.3054 -0.3399 17 7 6.8261 10.6154 -0.3262 18 14 5.7821 8.4702 -1.7364 19 1 4.3435 8.3569 -1.3856 20 1 5.9275 9.2756 -2.9756 21 1 6.3459 7.1145 -1.9581 22 6 8.1100 4.0259 2.5479 23 6 6.9820 3.2738 3.2775 24 6 9.0517 3.0345 1.8707 25 6 9.7809 2.2180 2.9424 26 8 10.4705 3.1052 3.8255 27 6 9.6177 4.0067 4.5343 28 6 8.8810 4.9018 3.5329 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4755 1.4868 -0.9927 34 1 3.2688 3.2697 1.3192 35 1 4.3587 2.6397 0.0608 36 1 5.4438 5.3431 2.3299 37 1 5.3974 4.5819 0.7109 38 1 7.2516 6.6757 2.7003 39 1 8.7717 6.5384 1.7844 40 1 6.6401 6.7478 -0.0563 41 1 6.4433 11.1472 -1.0414 42 1 7.2935 2.2561 3.5128 43 1 6.6957 3.8046 4.1854 44 1 9.7800 3.5774 1.2681 45 1 8.4767 2.3648 1.2311 46 1 9.0570 1.6316 3.5081 47 1 10.4974 1.5493 2.4653 48 1 8.8923 3.4389 5.1169 49 1 10.2172 4.6247 5.2028 50 1 8.1850 5.5492 4.0663 51 1 9.6030 5.5122 2.9903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186309653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:07 Heat of formation + Delta-G solvation = -79.909976 kcal Electronic energy + Delta-G solvation = -30714.088953 eV Core-core repulsion = 26614.973017 eV Total energy + Delta-G solvation = -4099.115937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09422 -39.40759 -38.02802 -37.30497 -34.89880 -34.15550 -33.56914 -31.85607 -31.25145 -29.76842 -29.26826 -26.81392 -25.92659 -25.44220 -24.30689 -23.74034 -22.05530 -20.94531 -20.41879 -19.47913 -18.72744 -17.77042 -17.40715 -16.72889 -16.68446 -16.16941 -16.09455 -15.88213 -15.56690 -15.11864 -14.93811 -14.60277 -14.51423 -14.32947 -13.99409 -13.55087 -13.45944 -13.04111 -12.87318 -12.66781 -12.55561 -12.46016 -12.30940 -12.24518 -11.98111 -11.77106 -11.45364 -11.31720 -11.28684 -11.19953 -10.95572 -10.72205 -10.38455 -10.30307 -10.21023 -10.10982 -9.89446 -9.67890 -9.65787 -9.47905 -8.98310 -8.83840 -7.33148 -5.85121 -3.21610 1.77257 2.46627 2.53387 3.27519 3.28467 3.37228 3.65141 3.79432 4.19093 4.38471 4.46479 4.49851 4.52036 4.69463 4.75510 4.86133 4.90191 4.91227 4.93871 5.02339 5.03946 5.05622 5.14945 5.17097 5.26789 5.32972 5.43864 5.45068 5.46487 5.50586 5.57022 5.57623 5.64118 5.71924 5.78904 5.86575 5.93895 6.01686 6.05144 6.14430 6.21409 6.22504 6.28528 6.56436 6.60466 6.75456 7.10853 7.38152 7.89965 8.02112 8.33379 9.11568 9.83639 10.02366 11.33251 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006562 B = 0.004241 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4265.948404 B = 6601.309476 C =10368.631985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.361 6.361 5 C 0.047 3.953 6 C 0.538 3.462 7 O -0.526 6.526 8 N -0.622 5.622 9 C 0.103 3.897 10 C -0.102 4.102 11 H 0.085 0.915 12 C 0.166 3.834 13 N -0.756 5.756 14 C -0.245 4.245 15 H 0.091 0.909 16 C 0.006 3.994 17 N -0.933 5.933 18 Si 0.883 3.117 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.063 4.063 23 C 0.115 3.885 24 C -0.140 4.140 25 C 0.060 3.940 26 O -0.383 6.383 27 C 0.058 3.942 28 C -0.146 4.146 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.359 0.641 41 H 0.260 0.740 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -19.033 4.254 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.279 6.279 5 C -0.033 4.033 6 C 0.325 3.675 7 O -0.401 6.401 8 N -0.358 5.358 9 C -0.020 4.020 10 C -0.121 4.121 11 H 0.103 0.897 12 C 0.039 3.961 13 N -0.402 5.402 14 C -0.375 4.375 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.580 5.580 18 Si 0.713 3.287 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.065 4.065 23 C -0.007 4.007 24 C -0.177 4.177 25 C -0.017 4.017 26 O -0.301 6.301 27 C -0.018 4.018 28 C -0.184 4.184 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.191 0.809 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.113 0.887 50 H 0.102 0.898 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.612 -19.629 4.766 20.520 hybrid contribution -1.130 -0.025 -1.492 1.872 sum -4.742 -19.654 3.273 20.481 Atomic orbital electron populations 1.23850 0.95499 1.02363 0.99987 1.22707 0.95609 0.98117 1.00267 1.21640 0.88751 0.96285 0.92419 1.88009 1.44356 1.34972 1.60558 1.22175 0.93129 0.89244 0.98731 1.19748 0.81663 0.82548 0.83499 1.90721 1.72299 1.26501 1.50600 1.48951 1.31097 1.14612 1.41100 1.22681 0.97662 0.83020 0.98616 1.22360 0.93474 0.97003 0.99302 0.89703 1.20844 0.97165 0.86194 0.91941 1.42745 1.67466 1.04390 1.25611 1.19030 1.30163 0.80673 1.07631 0.89147 1.24676 1.00758 0.95181 0.98401 1.69691 1.50155 1.03677 1.34504 0.86583 0.80183 0.78754 0.83188 1.21071 1.21678 1.20410 1.21092 0.94446 0.95262 0.95690 1.22504 0.85114 1.01442 0.91669 1.22155 0.98708 0.98345 0.98515 1.22642 0.96440 0.91665 0.90961 1.87918 1.34167 1.49816 1.58233 1.22685 0.93988 0.91512 0.93658 1.22346 1.00302 0.98202 0.97541 0.87698 0.88340 0.86431 0.92394 0.91957 0.89972 0.90055 0.89621 0.90429 0.94932 0.94492 0.80866 0.92982 0.89845 0.90713 0.90283 0.90974 0.93140 0.88959 0.93387 0.88691 0.89772 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 14.31 29.01 0.42 -0.91 16 2 C -0.15 -1.33 9.89 -36.02 -0.36 -1.69 16 3 C 0.09 0.81 6.35 36.01 0.23 1.04 16 4 O -0.36 -4.64 9.86 -55.14 -0.54 -5.19 16 5 C 0.05 0.53 5.40 36.00 0.19 0.73 16 6 C 0.54 7.52 7.99 -10.98 -0.09 7.43 16 7 O -0.53 -9.30 16.77 -14.35 -0.24 -9.54 16 8 N -0.62 -7.72 3.32 -169.37 -0.56 -8.28 16 9 C 0.10 1.26 6.30 -2.32 -0.01 1.24 16 10 C -0.10 -1.32 2.73 -89.42 -0.24 -1.57 16 11 H 0.08 1.15 7.70 -51.93 -0.40 0.75 16 12 C 0.17 2.74 4.41 -4.04 -0.02 2.72 16 13 N -0.76 -16.16 5.29 -59.91 -0.32 -16.48 16 14 C -0.25 -6.51 10.47 -15.06 -0.16 -6.67 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 17 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 18 Si 0.88 20.83 27.74 -169.99 -4.71 16.12 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 22 C -0.06 -0.71 0.69 -153.97 -0.11 -0.82 16 23 C 0.11 1.32 5.12 -2.58 -0.01 1.31 16 24 C -0.14 -1.51 4.67 -26.84 -0.13 -1.63 16 25 C 0.06 0.62 6.64 37.26 0.25 0.86 16 26 O -0.38 -4.53 10.75 -35.23 -0.38 -4.91 16 27 C 0.06 0.58 6.65 37.26 0.25 0.83 16 28 C -0.15 -1.58 3.63 -26.78 -0.10 -1.67 16 29 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 30 H 0.10 0.64 7.90 -52.49 -0.41 0.22 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 36 H 0.09 1.09 7.76 -51.93 -0.40 0.68 16 37 H 0.08 0.88 7.31 -51.93 -0.38 0.50 16 38 H 0.03 0.54 7.00 -51.93 -0.36 0.18 16 39 H 0.04 0.64 6.42 -51.93 -0.33 0.30 16 40 H 0.36 7.44 5.48 -40.82 -0.22 7.21 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 1.01 5.92 -51.93 -0.31 0.70 16 43 H 0.07 0.81 7.78 -51.93 -0.40 0.40 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.51 6.52 -51.93 -0.34 0.17 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.05 0.44 7.55 -51.93 -0.39 0.05 16 49 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 0.88 6.98 -51.93 -0.36 0.51 16 51 H 0.09 1.07 6.52 -51.93 -0.34 0.73 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -33.54 397.17 -8.43 -41.97 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.46 Total: 6.61 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 0.02 Total: 1.26 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.10 Total: -52.31 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.16 Total: -19.63 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.54 -8.43 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186309653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.938 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds