Wall clock time and date at job start Tue Mar 31 2020 22:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99747 * 2 1 4 4 O 1.42902 * 109.46933 * 134.99982 * 3 2 1 5 5 C 1.42896 * 113.99843 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47153 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00225 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00099 * 180.02562 * 6 5 4 9 9 C 1.48186 * 127.79704 * 0.02562 * 8 6 5 10 10 C 1.54520 * 104.63831 * 219.25751 * 9 8 6 11 11 H 1.08996 * 110.37472 * 95.04864 * 10 9 8 12 12 C 1.52997 * 110.47437 * 217.35408 * 10 9 8 13 13 N 1.46504 * 109.46938 * 290.41381 * 12 10 9 14 14 C 1.36937 * 119.99796 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00369 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99869 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00234 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99890 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47276 * 90.00467 * 18 16 14 20 20 H 1.48505 * 109.46676 * 210.00053 * 18 16 14 21 21 H 1.48492 * 109.47032 * 329.99753 * 18 16 14 22 22 C 1.53781 * 104.78062 * 336.22814 * 10 9 8 23 23 C 1.48257 * 127.80033 * 179.97438 * 8 6 5 24 24 C 1.52590 * 110.26505 * 119.03236 * 22 10 9 25 25 C 1.53204 * 109.24379 * 177.74290 * 24 22 10 26 26 O 1.42918 * 109.33413 * 303.28901 * 25 24 22 27 27 C 1.42906 * 114.21939 * 61.61454 * 26 25 24 28 28 C 1.52706 * 110.35668 * 241.16573 * 22 10 9 29 29 H 1.08001 * 119.99704 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99921 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00190 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47398 * 15.00133 * 3 2 1 33 33 H 1.09004 * 109.46842 * 254.99750 * 3 2 1 34 34 H 1.09008 * 109.47256 * 59.99861 * 5 4 3 35 35 H 1.09000 * 109.47499 * 300.00017 * 5 4 3 36 36 H 1.09006 * 110.40347 * 100.47150 * 9 8 6 37 37 H 1.08996 * 110.50900 * 338.10005 * 9 8 6 38 38 H 1.09004 * 109.47316 * 50.41085 * 12 10 9 39 39 H 1.08996 * 109.47175 * 170.41465 * 12 10 9 40 40 H 0.97001 * 120.00207 * 359.97438 * 13 12 10 41 41 H 0.97000 * 120.00411 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.42462 * 22.13441 * 23 8 6 43 43 H 1.08994 * 110.43067 * 259.64347 * 23 8 6 44 44 H 1.09002 * 109.51671 * 57.79905 * 24 22 10 45 45 H 1.09001 * 109.51643 * 297.68867 * 24 22 10 46 46 H 1.08999 * 109.49293 * 63.24211 * 25 24 22 47 47 H 1.08998 * 109.49534 * 183.29581 * 25 24 22 48 48 H 1.09003 * 109.48872 * 58.35494 * 27 26 25 49 49 H 1.09004 * 109.49316 * 178.40118 * 27 26 25 50 50 H 1.09000 * 109.50666 * 62.40160 * 28 22 10 51 51 H 1.09006 * 109.54510 * 302.28151 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9938 2.2570 2.0621 7 8 5.0890 1.2108 2.6682 8 7 5.8589 3.2604 2.3098 9 6 5.9015 4.5998 1.6772 10 6 7.4066 4.8975 1.4941 11 1 7.7299 4.6162 0.4919 12 6 7.6942 6.3783 1.7495 13 7 7.1159 7.1815 0.6693 14 6 7.2480 8.5444 0.6833 15 1 7.7781 9.0273 1.4909 16 6 6.6996 9.3054 -0.3399 17 7 6.8261 10.6154 -0.3262 18 14 5.7821 8.4702 -1.7364 19 1 4.3435 8.3569 -1.3856 20 1 5.9275 9.2756 -2.9756 21 1 6.3459 7.1145 -1.9581 22 6 8.1100 4.0259 2.5479 23 6 6.9820 3.2738 3.2775 24 6 9.0517 3.0345 1.8707 25 6 9.7809 2.2180 2.9424 26 8 10.4705 3.1052 3.8255 27 6 9.6177 4.0067 4.5343 28 6 8.8810 4.9018 3.5329 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4755 1.4868 -0.9927 34 1 3.2688 3.2697 1.3192 35 1 4.3587 2.6397 0.0608 36 1 5.4438 5.3431 2.3299 37 1 5.3974 4.5819 0.7109 38 1 7.2516 6.6757 2.7003 39 1 8.7717 6.5384 1.7844 40 1 6.6401 6.7478 -0.0563 41 1 6.4433 11.1472 -1.0414 42 1 7.2935 2.2561 3.5128 43 1 6.6957 3.8046 4.1854 44 1 9.7800 3.5774 1.2681 45 1 8.4767 2.3648 1.2311 46 1 9.0570 1.6316 3.5081 47 1 10.4974 1.5493 2.4653 48 1 8.8923 3.4389 5.1169 49 1 10.2172 4.6247 5.2028 50 1 8.1850 5.5492 4.0663 51 1 9.6030 5.5122 2.9903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186309653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:06 Heat of formation + Delta-G solvation = -102.167583 kcal Electronic energy + Delta-G solvation = -30715.054116 eV Core-core repulsion = 26614.973017 eV Total energy + Delta-G solvation = -4100.081099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07556 -40.37760 -38.88200 -38.34331 -36.50967 -34.83544 -34.63964 -33.58348 -32.17815 -31.15684 -30.18172 -27.63278 -27.22426 -26.31712 -25.32712 -24.87029 -23.48570 -22.09640 -21.12968 -20.41143 -20.01887 -19.18820 -18.51538 -17.59829 -17.55619 -17.16453 -16.96748 -16.78432 -16.57731 -16.39240 -16.05449 -15.77987 -15.50276 -15.36243 -15.23386 -14.76820 -14.62666 -14.28238 -13.97720 -13.85952 -13.62399 -13.30301 -13.26661 -13.18013 -13.10520 -12.95946 -12.80006 -12.52912 -12.40576 -12.17420 -11.99251 -11.92942 -11.87507 -11.75851 -11.26573 -11.12918 -11.06435 -10.94453 -10.85237 -10.37943 -10.30211 -9.87031 -9.23884 -7.98028 -5.31650 1.13915 1.40070 1.43235 1.45253 1.52764 1.63495 2.52818 2.83764 2.98375 3.23785 3.33150 3.36522 3.52946 3.61330 3.84699 4.00634 4.03561 4.05544 4.09146 4.12588 4.14915 4.17172 4.19968 4.21644 4.35759 4.40554 4.43339 4.56874 4.58234 4.61029 4.64707 4.71880 4.80354 4.82053 4.85721 4.95531 4.96898 5.02131 5.10384 5.14188 5.17785 5.39601 5.40970 5.63142 5.66546 5.81615 6.01832 6.25110 6.28711 6.37924 6.99275 7.13141 7.88186 8.07362 9.23650 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006562 B = 0.004241 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4265.948404 B = 6601.309476 C =10368.631985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.081 3.919 4 O -0.391 6.391 5 C 0.047 3.953 6 C 0.533 3.467 7 O -0.570 6.570 8 N -0.616 5.616 9 C 0.104 3.896 10 C -0.093 4.093 11 H 0.086 0.914 12 C 0.167 3.833 13 N -0.756 5.756 14 C -0.229 4.229 15 H 0.056 0.944 16 C -0.066 4.066 17 N -0.987 5.987 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.303 1.303 21 H -0.246 1.246 22 C -0.055 4.055 23 C 0.114 3.886 24 C -0.135 4.135 25 C 0.059 3.941 26 O -0.399 6.399 27 C 0.058 3.942 28 C -0.144 4.144 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.366 0.634 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.104 0.896 48 H 0.059 0.941 49 H 0.106 0.894 50 H 0.088 0.912 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -20.735 3.570 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.006 3.994 4 O -0.311 6.311 5 C -0.032 4.032 6 C 0.323 3.677 7 O -0.449 6.449 8 N -0.350 5.350 9 C -0.018 4.018 10 C -0.113 4.113 11 H 0.105 0.895 12 C 0.042 3.958 13 N -0.402 5.402 14 C -0.360 4.360 15 H 0.074 0.926 16 C -0.257 4.257 17 N -0.638 5.638 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.231 1.231 21 H -0.170 1.170 22 C -0.057 4.057 23 C -0.008 4.008 24 C -0.173 4.173 25 C -0.017 4.017 26 O -0.318 6.318 27 C -0.019 4.019 28 C -0.181 4.181 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.199 0.801 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.124 0.876 50 H 0.106 0.894 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.774 -21.372 4.102 22.279 hybrid contribution -0.711 0.519 -1.163 1.459 sum -5.485 -20.852 2.938 21.761 Atomic orbital electron populations 1.24071 0.95012 1.03533 0.97679 1.22764 0.96290 0.97883 1.02450 1.21820 0.88303 0.96886 0.92392 1.87976 1.45396 1.35927 1.61759 1.22281 0.92694 0.89431 0.98802 1.20302 0.82023 0.81927 0.83465 1.90698 1.73577 1.28225 1.52429 1.48943 1.30832 1.14397 1.40836 1.22687 0.96946 0.82689 0.99499 1.22211 0.94580 0.94551 0.99953 0.89526 1.20940 0.96436 0.87890 0.90578 1.42709 1.67692 1.02741 1.27052 1.18997 1.28034 0.82987 1.05996 0.92610 1.25529 1.02725 0.95731 1.01765 1.69893 1.52410 1.05778 1.35735 0.85447 0.79180 0.78795 0.78626 1.19880 1.23081 1.17029 1.21019 0.94388 0.95026 0.95235 1.22560 0.84972 1.01314 0.91964 1.22107 0.98443 0.98176 0.98568 1.22708 0.96751 0.91531 0.90704 1.87902 1.35117 1.50223 1.58597 1.22772 0.94234 0.91413 0.93443 1.22304 1.00052 0.98193 0.97600 0.86454 0.87232 0.87249 0.91117 0.90740 0.87975 0.87868 0.89724 0.88737 0.94593 0.95035 0.80055 0.93498 0.90317 0.89808 0.90825 0.90895 0.92888 0.87776 0.92284 0.87604 0.89389 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 14.31 67.78 0.97 -1.14 16 2 C -0.18 -2.92 9.89 25.65 0.25 -2.67 16 3 C 0.08 1.38 6.35 71.24 0.45 1.84 16 4 O -0.39 -9.50 9.86 -129.94 -1.28 -10.79 16 5 C 0.05 0.95 5.40 71.24 0.38 1.33 16 6 C 0.53 14.02 7.99 87.66 0.70 14.72 16 7 O -0.57 -19.86 16.77 16.01 0.27 -19.59 16 8 N -0.62 -13.94 3.32 -808.15 -2.68 -16.62 16 9 C 0.10 2.24 6.30 86.57 0.55 2.78 16 10 C -0.09 -2.21 2.73 -10.01 -0.03 -2.24 16 11 H 0.09 2.09 7.70 -2.39 -0.02 2.07 16 12 C 0.17 5.28 4.41 86.38 0.38 5.66 16 13 N -0.76 -30.97 5.29 -343.45 -1.82 -32.79 16 14 C -0.23 -12.17 10.47 84.03 0.88 -11.29 16 15 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 16 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 17 N -0.99 -61.32 13.97 21.65 0.30 -61.02 16 18 Si 0.95 42.05 27.74 68.60 1.90 43.95 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.25 -9.44 6.52 99.48 0.65 -8.79 16 22 C -0.06 -1.14 0.69 -51.83 -0.04 -1.17 16 23 C 0.11 2.41 5.12 86.36 0.44 2.86 16 24 C -0.14 -2.70 4.67 30.53 0.14 -2.55 16 25 C 0.06 1.14 6.64 72.05 0.48 1.62 16 26 O -0.40 -8.87 10.75 -148.98 -1.60 -10.47 16 27 C 0.06 1.07 6.65 72.05 0.48 1.54 16 28 C -0.14 -2.90 3.63 30.56 0.11 -2.79 16 29 H 0.12 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.11 1.13 7.90 -2.91 -0.02 1.11 16 31 H 0.11 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.07 0.98 7.86 -2.39 -0.02 0.96 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.10 1.60 7.95 -2.39 -0.02 1.58 16 36 H 0.08 1.90 7.76 -2.38 -0.02 1.88 16 37 H 0.09 1.75 7.31 -2.39 -0.02 1.74 16 38 H 0.04 1.14 7.00 -2.38 -0.02 1.12 16 39 H 0.03 1.06 6.42 -2.39 -0.02 1.05 16 40 H 0.37 13.99 5.48 -92.71 -0.51 13.48 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.08 1.79 5.92 -2.39 -0.01 1.78 16 43 H 0.08 1.64 7.78 -2.39 -0.02 1.62 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 0.99 6.52 -2.39 -0.02 0.98 16 47 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.06 0.97 7.55 -2.39 -0.02 0.95 16 49 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.09 1.70 6.98 -2.39 -0.02 1.69 16 51 H 0.07 1.74 6.52 -2.38 -0.02 1.73 16 Total: -1.00 -73.56 397.17 2.07 -71.49 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.35 Total: 30.57 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.62 Total: 5.26 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.20 Total: -110.43 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -2.61 Total: -40.85 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.90 Total: 43.95 kcal Total: -73.56 2.07 -71.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186309653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.674 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds