Wall clock time and date at job start Tue Mar 31 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47416 * 2 1 4 4 O 1.42889 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.42906 * 114.00285 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47494 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00026 * 179.97438 * 6 5 4 9 9 C 1.47145 * 125.73496 * 0.04512 * 8 6 5 10 10 C 1.54337 * 107.22971 * 179.59808 * 9 8 6 11 11 C 1.55423 * 103.00334 * 337.85060 * 10 9 8 12 12 H 1.08998 * 112.32693 * 154.03193 * 11 10 9 13 13 C 1.46913 * 125.73411 * 180.02562 * 8 6 5 14 14 H 1.08999 * 109.83098 * 84.88926 * 13 8 6 15 15 C 1.52323 * 110.84801 * 323.13828 * 13 8 6 16 16 C 1.52979 * 109.47907 * 306.88036 * 15 13 8 17 17 C 1.50310 * 109.11655 * 307.95097 * 16 15 13 18 18 O 1.21286 * 118.57471 * 201.66923 * 17 16 15 19 19 N 1.33126 * 122.85860 * 21.89539 * 17 16 15 20 20 C 1.46496 * 117.27121 * 179.60926 * 19 17 16 21 21 C 1.52999 * 109.47013 * 84.39324 * 20 19 17 22 22 C 1.50699 * 109.46909 * 176.49327 * 21 20 19 23 23 H 1.07997 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00041 * 179.97438 * 22 21 20 25 25 N 1.31507 * 120.00098 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99864 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47011 * 89.99443 * 26 24 22 28 28 H 1.48492 * 109.47352 * 209.99633 * 26 24 22 29 29 H 1.48503 * 109.47220 * 330.00069 * 26 24 22 30 30 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46817 * 300.00295 * 1 2 3 32 32 H 1.09000 * 109.47115 * 60.00159 * 1 2 3 33 33 H 1.08993 * 109.47039 * 239.99734 * 2 1 3 34 34 H 1.09000 * 109.47115 * 119.99840 * 2 1 3 35 35 H 1.09003 * 109.46935 * 59.99424 * 3 2 1 36 36 H 1.09000 * 109.46848 * 300.00004 * 3 2 1 37 37 H 1.09006 * 109.47129 * 59.99615 * 5 4 3 38 38 H 1.09002 * 109.46563 * 300.00117 * 5 4 3 39 39 H 1.09001 * 109.88495 * 298.99976 * 9 8 6 40 40 H 1.08998 * 109.88689 * 60.19002 * 9 8 6 41 41 H 1.09003 * 110.70852 * 219.47444 * 10 9 8 42 42 H 1.08998 * 110.70995 * 96.22870 * 10 9 8 43 43 H 1.08993 * 109.46859 * 66.88581 * 15 13 8 44 44 H 1.09002 * 109.46919 * 186.87451 * 15 13 8 45 45 H 1.08999 * 109.51936 * 68.04650 * 16 15 13 46 46 H 1.09001 * 109.51949 * 188.16363 * 16 15 13 47 47 H 1.08991 * 109.46905 * 324.38820 * 20 19 17 48 48 H 1.09004 * 109.47003 * 204.38935 * 20 19 17 49 49 H 1.09001 * 109.46789 * 296.49204 * 21 20 19 50 50 H 1.08993 * 109.47364 * 56.49429 * 21 20 19 51 51 H 0.96999 * 120.00118 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5526 2.6289 -0.0001 7 8 6.0741 1.5339 -0.0001 8 7 6.3165 3.7392 -0.0002 9 6 5.8196 5.1242 0.0007 10 6 7.0528 6.0523 0.0106 11 6 8.1722 5.1403 0.5856 12 1 9.1655 5.4477 0.2586 13 6 7.7853 3.7701 -0.0008 14 1 8.1565 3.6868 -1.0223 15 6 8.3516 2.6426 0.8526 16 6 7.7236 2.6933 2.2467 17 6 7.8736 4.0812 2.8040 18 8 7.8124 4.2335 4.0057 19 7 8.0664 5.1511 2.0357 20 6 8.1877 6.4471 2.7078 21 6 9.6332 6.6506 3.1661 22 6 9.7774 8.0191 3.7805 23 1 8.9234 8.6776 3.8387 24 6 10.9994 8.4300 4.2693 25 7 11.1251 9.6241 4.8059 26 14 12.4763 7.2908 4.1693 27 1 13.1914 7.5187 2.8878 28 1 13.3933 7.5682 5.3039 29 1 12.0185 5.8797 4.2364 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.7290 3.2884 0.8904 38 1 3.7283 3.2893 -0.8896 39 1 5.2261 5.3058 -0.8953 40 1 5.2154 5.3008 0.8906 41 1 6.8837 6.9111 0.6602 42 1 7.3002 6.3753 -1.0006 43 1 8.1238 1.6843 0.3861 44 1 9.4322 2.7580 0.9365 45 1 6.6665 2.4365 2.1795 46 1 8.2301 1.9830 2.9003 47 1 7.5254 6.4710 3.5731 48 1 7.9105 7.2425 2.0160 49 1 9.8903 5.8916 3.9050 50 1 10.3015 6.5648 2.3094 51 1 11.9849 9.9133 5.1495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269913566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:52 Heat of formation + Delta-G solvation = -109.417336 kcal Electronic energy + Delta-G solvation = -30943.589842 eV Core-core repulsion = 26843.194371 eV Total energy + Delta-G solvation = -4100.395472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45992 -39.51410 -38.26505 -37.36394 -35.05321 -34.21219 -33.85420 -32.85191 -31.33923 -29.85555 -28.88566 -28.11736 -25.98405 -25.32536 -24.28031 -22.68334 -21.96959 -21.91206 -20.89434 -19.42214 -18.16464 -17.42411 -17.38919 -16.95369 -16.73999 -16.40888 -16.14414 -15.62690 -15.53695 -15.12425 -14.59998 -14.36040 -14.29083 -14.03942 -13.67812 -13.55429 -13.42593 -12.89483 -12.87332 -12.78348 -12.56974 -12.48488 -12.46572 -12.30642 -12.17842 -11.85656 -11.52570 -11.33563 -11.30834 -11.26254 -11.08899 -11.02733 -10.91220 -10.40572 -10.07764 -10.03575 -9.85565 -9.76469 -9.34716 -9.09084 -8.90403 -8.54317 -8.24820 -6.05721 -4.03913 2.30760 2.36561 3.03815 3.29834 3.32498 3.38989 3.44347 3.45977 4.00191 4.23666 4.42401 4.45680 4.52974 4.61015 4.64306 4.72735 4.73403 4.76828 4.83528 4.89978 4.99103 5.01516 5.04388 5.07155 5.28978 5.29965 5.30749 5.33223 5.43832 5.58503 5.58680 5.60899 5.71682 5.74292 5.78366 5.81727 5.91440 6.00353 6.08924 6.18897 6.34285 6.63114 6.68380 6.69107 7.19703 7.24333 7.40699 7.76134 7.90276 7.92378 8.48456 8.59645 8.97375 9.56944 11.07390 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.002508 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.817131 B =11159.678525 C =11236.808443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.049 3.951 6 C 0.532 3.468 7 O -0.512 6.512 8 N -0.613 5.613 9 C 0.100 3.900 10 C -0.148 4.148 11 C 0.136 3.864 12 H 0.108 0.892 13 C 0.134 3.866 14 H 0.094 0.906 15 C -0.133 4.133 16 C -0.126 4.126 17 C 0.513 3.487 18 O -0.545 6.545 19 N -0.596 5.596 20 C 0.117 3.883 21 C -0.022 4.022 22 C -0.518 4.518 23 H 0.073 0.927 24 C 0.069 3.931 25 N -0.902 5.902 26 Si 0.879 3.121 27 H -0.278 1.278 28 H -0.287 1.287 29 H -0.265 1.265 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.023 0.977 50 H 0.009 0.991 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 -14.127 -16.781 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.031 4.031 6 C 0.320 3.680 7 O -0.387 6.387 8 N -0.350 5.350 9 C -0.023 4.023 10 C -0.187 4.187 11 C 0.030 3.970 12 H 0.126 0.874 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.171 4.171 16 C -0.166 4.166 17 C 0.301 3.699 18 O -0.423 6.423 19 N -0.328 5.328 20 C -0.004 4.004 21 C -0.060 4.060 22 C -0.556 4.556 23 H 0.091 0.909 24 C -0.132 4.132 25 N -0.541 5.541 26 Si 0.706 3.294 27 H -0.204 1.204 28 H -0.213 1.213 29 H -0.190 1.190 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.042 0.958 50 H 0.027 0.973 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.398 -14.814 -16.073 27.937 hybrid contribution 0.696 0.020 -0.060 0.699 sum -16.702 -14.794 -16.134 27.533 Atomic orbital electron populations 1.21700 0.94627 1.02360 1.02022 1.21447 0.95629 0.95333 1.03702 1.22643 0.80350 0.98378 1.00302 1.87991 1.19663 1.25126 1.95444 1.22152 0.91418 0.86939 1.02576 1.19791 0.88211 0.83247 0.76735 1.90704 1.74067 1.25689 1.48190 1.48375 1.06678 1.05944 1.74027 1.22140 0.97675 0.80634 1.01869 1.23247 0.93737 0.98680 1.02988 1.21996 0.99539 0.94303 0.81155 0.87427 1.21721 0.79890 0.95145 1.00100 0.88864 1.21743 1.00375 1.00200 0.94791 1.21555 1.03379 0.94562 0.97136 1.20011 0.76559 0.86530 0.86838 1.90745 1.50568 1.86076 1.14875 1.47326 1.70885 1.09194 1.05423 1.21732 1.00564 0.81307 0.96748 1.19823 0.91730 0.98161 0.96279 1.20959 0.97082 0.98572 1.39009 0.90933 1.24969 0.98813 0.94892 0.94551 1.69900 1.25011 1.18620 1.40549 0.86787 0.82722 0.82194 0.77677 1.20366 1.21335 1.19009 0.91916 0.92457 0.92538 0.90990 0.90891 0.93061 0.93185 0.90282 0.90339 0.90865 0.91111 0.88063 0.89147 0.88188 0.90357 0.89216 0.88577 0.90492 0.90896 0.95827 0.97254 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.03 16 3 C 0.06 0.45 5.94 37.16 0.22 0.67 16 4 O -0.36 -4.01 9.88 -55.14 -0.54 -4.56 16 5 C 0.05 0.44 5.62 36.00 0.20 0.65 16 6 C 0.53 6.23 6.42 -10.99 -0.07 6.16 16 7 O -0.51 -7.73 13.75 -14.35 -0.20 -7.93 16 8 N -0.61 -6.24 2.82 -164.28 -0.46 -6.71 16 9 C 0.10 0.79 6.46 -2.99 -0.02 0.77 16 10 C -0.15 -1.29 6.35 -24.74 -0.16 -1.45 16 11 C 0.14 1.57 3.66 -66.72 -0.24 1.33 16 12 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 13 C 0.13 1.42 3.27 -67.54 -0.22 1.20 16 14 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.13 -1.63 4.95 -27.09 -0.13 -1.77 16 16 C -0.13 -1.86 5.59 -28.08 -0.16 -2.02 16 17 C 0.51 9.25 7.38 -11.91 -0.09 9.17 16 18 O -0.54 -12.43 16.01 5.55 0.09 -12.34 16 19 N -0.60 -9.60 2.52 -165.50 -0.42 -10.01 16 20 C 0.12 2.27 4.73 -4.04 -0.02 2.25 16 21 C -0.02 -0.52 4.25 -27.88 -0.12 -0.64 16 22 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 23 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 24 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 25 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 26 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.99 5.92 -51.93 -0.31 0.68 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.10 1.29 6.28 -51.93 -0.33 0.96 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.35 6.12 -51.93 -0.32 1.03 16 46 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.08 1.66 7.33 -51.93 -0.38 1.28 16 48 H 0.07 1.24 5.96 -51.93 -0.31 0.93 16 49 H 0.02 0.63 6.97 -51.93 -0.36 0.27 16 50 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 51 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -36.67 395.83 -9.25 -45.91 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -8.75 Total: -2.68 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.04 Total: 1.84 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.11 Total: -43.74 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.65 Total: -24.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.67 -9.25 -45.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269913566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.504 kcal (2) G-P(sol) polarization free energy of solvation -36.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds