Wall clock time and date at job start Tue Mar 31 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47416 * 2 1 4 4 O 1.42889 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.42906 * 114.00285 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47494 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00026 * 179.97438 * 6 5 4 9 9 C 1.47145 * 125.73496 * 0.04512 * 8 6 5 10 10 C 1.54337 * 107.22971 * 179.59808 * 9 8 6 11 11 C 1.55423 * 103.00334 * 337.85060 * 10 9 8 12 12 H 1.08998 * 112.32693 * 154.03193 * 11 10 9 13 13 C 1.46913 * 125.73411 * 180.02562 * 8 6 5 14 14 H 1.08999 * 109.83098 * 84.88926 * 13 8 6 15 15 C 1.52323 * 110.84801 * 323.13828 * 13 8 6 16 16 C 1.52979 * 109.47907 * 306.88036 * 15 13 8 17 17 C 1.50310 * 109.11655 * 307.95097 * 16 15 13 18 18 O 1.21286 * 118.57471 * 201.66923 * 17 16 15 19 19 N 1.33126 * 122.85860 * 21.89539 * 17 16 15 20 20 C 1.46496 * 117.27121 * 179.60926 * 19 17 16 21 21 C 1.52999 * 109.47013 * 84.39324 * 20 19 17 22 22 C 1.50699 * 109.46909 * 176.49327 * 21 20 19 23 23 H 1.07997 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00041 * 179.97438 * 22 21 20 25 25 N 1.31507 * 120.00098 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99864 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47011 * 89.99443 * 26 24 22 28 28 H 1.48492 * 109.47352 * 209.99633 * 26 24 22 29 29 H 1.48503 * 109.47220 * 330.00069 * 26 24 22 30 30 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46817 * 300.00295 * 1 2 3 32 32 H 1.09000 * 109.47115 * 60.00159 * 1 2 3 33 33 H 1.08993 * 109.47039 * 239.99734 * 2 1 3 34 34 H 1.09000 * 109.47115 * 119.99840 * 2 1 3 35 35 H 1.09003 * 109.46935 * 59.99424 * 3 2 1 36 36 H 1.09000 * 109.46848 * 300.00004 * 3 2 1 37 37 H 1.09006 * 109.47129 * 59.99615 * 5 4 3 38 38 H 1.09002 * 109.46563 * 300.00117 * 5 4 3 39 39 H 1.09001 * 109.88495 * 298.99976 * 9 8 6 40 40 H 1.08998 * 109.88689 * 60.19002 * 9 8 6 41 41 H 1.09003 * 110.70852 * 219.47444 * 10 9 8 42 42 H 1.08998 * 110.70995 * 96.22870 * 10 9 8 43 43 H 1.08993 * 109.46859 * 66.88581 * 15 13 8 44 44 H 1.09002 * 109.46919 * 186.87451 * 15 13 8 45 45 H 1.08999 * 109.51936 * 68.04650 * 16 15 13 46 46 H 1.09001 * 109.51949 * 188.16363 * 16 15 13 47 47 H 1.08991 * 109.46905 * 324.38820 * 20 19 17 48 48 H 1.09004 * 109.47003 * 204.38935 * 20 19 17 49 49 H 1.09001 * 109.46789 * 296.49204 * 21 20 19 50 50 H 1.08993 * 109.47364 * 56.49429 * 21 20 19 51 51 H 0.96999 * 120.00118 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5526 2.6289 -0.0001 7 8 6.0741 1.5339 -0.0001 8 7 6.3165 3.7392 -0.0002 9 6 5.8196 5.1242 0.0007 10 6 7.0528 6.0523 0.0106 11 6 8.1722 5.1403 0.5856 12 1 9.1655 5.4477 0.2586 13 6 7.7853 3.7701 -0.0008 14 1 8.1565 3.6868 -1.0223 15 6 8.3516 2.6426 0.8526 16 6 7.7236 2.6933 2.2467 17 6 7.8736 4.0812 2.8040 18 8 7.8124 4.2335 4.0057 19 7 8.0664 5.1511 2.0357 20 6 8.1877 6.4471 2.7078 21 6 9.6332 6.6506 3.1661 22 6 9.7774 8.0191 3.7805 23 1 8.9234 8.6776 3.8387 24 6 10.9994 8.4300 4.2693 25 7 11.1251 9.6241 4.8059 26 14 12.4763 7.2908 4.1693 27 1 13.1914 7.5187 2.8878 28 1 13.3933 7.5682 5.3039 29 1 12.0185 5.8797 4.2364 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.7290 3.2884 0.8904 38 1 3.7283 3.2893 -0.8896 39 1 5.2261 5.3058 -0.8953 40 1 5.2154 5.3008 0.8906 41 1 6.8837 6.9111 0.6602 42 1 7.3002 6.3753 -1.0006 43 1 8.1238 1.6843 0.3861 44 1 9.4322 2.7580 0.9365 45 1 6.6665 2.4365 2.1795 46 1 8.2301 1.9830 2.9003 47 1 7.5254 6.4710 3.5731 48 1 7.9105 7.2425 2.0160 49 1 9.8903 5.8916 3.9050 50 1 10.3015 6.5648 2.3094 51 1 11.9849 9.9133 5.1495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269913566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:52 Heat of formation + Delta-G solvation = -133.418695 kcal Electronic energy + Delta-G solvation = -30944.630619 eV Core-core repulsion = 26843.194371 eV Total energy + Delta-G solvation = -4101.436249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49265 -40.59080 -39.15658 -38.32016 -36.52173 -35.21675 -34.76138 -34.49978 -32.58731 -31.43565 -29.77763 -28.89233 -27.07757 -26.55188 -25.22461 -23.96881 -22.89628 -22.58608 -22.40211 -20.42868 -19.21967 -19.12294 -18.23492 -17.95243 -17.79573 -17.41360 -17.14874 -16.85408 -16.52974 -16.35112 -15.95534 -15.39812 -15.23410 -15.02443 -14.86294 -14.77857 -14.45247 -14.39388 -14.31443 -13.88222 -13.69769 -13.58460 -13.11953 -13.03735 -12.99239 -12.88914 -12.85513 -12.65353 -12.34042 -12.18951 -12.06925 -12.01818 -11.92902 -11.84520 -11.79610 -11.63109 -11.47161 -10.86032 -10.77965 -10.69863 -10.47647 -9.70703 -9.68539 -8.31797 -6.34908 1.29130 1.34734 1.45939 1.49604 1.60681 1.62900 2.02101 2.33048 2.80112 3.03706 3.18079 3.46063 3.53093 3.68155 3.77434 3.95211 4.01852 4.06500 4.08235 4.17241 4.20161 4.25994 4.32226 4.36258 4.40542 4.49434 4.55257 4.60887 4.63301 4.68268 4.73048 4.78334 4.82469 4.84208 4.87173 4.97830 5.04110 5.14036 5.15530 5.21189 5.22406 5.31000 5.36061 5.38741 5.50261 5.67657 6.07870 6.23194 6.42264 6.54131 6.71358 7.10012 7.18030 7.29857 8.84272 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.002508 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.817131 B =11159.678525 C =11236.808443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.056 3.944 4 O -0.398 6.398 5 C 0.049 3.951 6 C 0.526 3.474 7 O -0.555 6.555 8 N -0.611 5.611 9 C 0.097 3.903 10 C -0.140 4.140 11 C 0.121 3.879 12 H 0.122 0.878 13 C 0.137 3.863 14 H 0.125 0.875 15 C -0.128 4.128 16 C -0.116 4.116 17 C 0.508 3.492 18 O -0.604 6.604 19 N -0.586 5.586 20 C 0.131 3.869 21 C -0.013 4.013 22 C -0.525 4.525 23 H 0.043 0.957 24 C 0.011 3.989 25 N -0.944 5.944 26 Si 0.944 3.056 27 H -0.253 1.253 28 H -0.285 1.285 29 H -0.268 1.268 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.102 0.898 49 H -0.006 1.006 50 H 0.027 0.973 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 -14.296 -19.995 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.020 4.020 4 O -0.317 6.317 5 C -0.030 4.030 6 C 0.315 3.685 7 O -0.433 6.433 8 N -0.347 5.347 9 C -0.025 4.025 10 C -0.178 4.178 11 C 0.017 3.983 12 H 0.140 0.860 13 C 0.034 3.966 14 H 0.142 0.858 15 C -0.166 4.166 16 C -0.156 4.156 17 C 0.297 3.703 18 O -0.486 6.486 19 N -0.316 5.316 20 C 0.009 3.991 21 C -0.051 4.051 22 C -0.563 4.563 23 H 0.061 0.939 24 C -0.187 4.187 25 N -0.585 5.585 26 Si 0.768 3.232 27 H -0.178 1.178 28 H -0.211 1.211 29 H -0.193 1.193 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.120 0.880 49 H 0.012 0.988 50 H 0.045 0.955 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.818 -14.953 -19.353 30.259 hybrid contribution 0.756 0.119 0.967 1.234 sum -17.061 -14.834 -18.386 29.141 Atomic orbital electron populations 1.21673 0.93003 1.02876 1.02683 1.21476 0.97010 0.95182 1.02632 1.22814 0.78885 0.98729 1.01566 1.87953 1.21468 1.26524 1.95733 1.22269 0.89493 0.86652 1.04558 1.20318 0.89391 0.82870 0.75916 1.90683 1.74968 1.27291 1.50336 1.48436 1.06513 1.06620 1.73174 1.22335 0.97663 0.79002 1.03473 1.23265 0.92521 0.97632 1.04367 1.22452 1.01640 0.96216 0.77964 0.86031 1.21798 0.80371 0.93439 1.01041 0.85777 1.21706 1.00685 1.01013 0.93158 1.21456 1.03360 0.92109 0.98682 1.20591 0.75563 0.87927 0.86217 1.90717 1.53352 1.86985 1.17518 1.47308 1.69517 1.07286 1.07468 1.21340 0.96970 0.83892 0.96910 1.19683 0.95074 0.94621 0.95745 1.21273 0.96147 0.99962 1.38949 0.93890 1.25860 1.02095 0.96386 0.94330 1.70032 1.26038 1.20529 1.41897 0.85751 0.79057 0.79584 0.78764 1.17772 1.21101 1.19272 0.91535 0.92082 0.91532 0.91696 0.92378 0.92297 0.91250 0.89183 0.87105 0.87112 0.91776 0.89138 0.85637 0.88570 0.89644 0.89590 0.89084 0.93453 0.88025 0.98801 0.95454 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.55 16 2 C -0.13 -1.68 6.30 30.59 0.19 -1.49 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 O -0.40 -8.33 9.88 -129.94 -1.28 -9.62 16 5 C 0.05 0.78 5.62 71.23 0.40 1.18 16 6 C 0.53 11.33 6.42 87.66 0.56 11.89 16 7 O -0.55 -16.37 13.75 16.00 0.22 -16.15 16 8 N -0.61 -10.66 2.82 -792.05 -2.23 -12.89 16 9 C 0.10 1.16 6.46 86.71 0.56 1.72 16 10 C -0.14 -1.86 6.35 31.88 0.20 -1.65 16 11 C 0.12 2.41 3.66 46.36 0.17 2.58 16 12 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 13 C 0.14 2.46 3.27 45.02 0.15 2.61 16 14 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 15 C -0.13 -2.93 4.95 30.36 0.15 -2.78 16 16 C -0.12 -3.43 5.59 29.72 0.17 -3.26 16 17 C 0.51 18.47 7.38 87.79 0.65 19.12 16 18 O -0.60 -28.68 16.01 -3.05 -0.05 -28.73 16 19 N -0.59 -18.22 2.52 -796.84 -2.00 -20.23 16 20 C 0.13 5.05 4.73 86.38 0.41 5.46 16 21 C -0.01 -0.62 4.25 29.85 0.13 -0.49 16 22 C -0.52 -30.21 9.66 25.60 0.25 -29.96 16 23 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 24 C 0.01 0.64 5.47 84.66 0.46 1.10 16 25 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 26 Si 0.94 45.68 27.47 68.60 1.88 47.56 16 27 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 29 H -0.27 -12.98 6.54 99.48 0.65 -12.33 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.46 5.92 -2.39 -0.01 1.45 16 42 H 0.13 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.10 2.37 6.28 -2.39 -0.02 2.36 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.09 2.62 6.12 -2.39 -0.01 2.61 16 46 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.05 2.11 7.33 -2.39 -0.02 2.09 16 48 H 0.10 3.33 5.96 -2.38 -0.01 3.31 16 49 H -0.01 -0.35 6.97 -2.39 -0.02 -0.37 16 50 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 51 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -83.84 395.83 3.27 -80.56 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.85 Total: 11.60 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.59 Total: 6.67 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.94 Total: -91.91 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -1.11 Total: -54.49 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -83.84 3.27 -80.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269913566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.856 kcal (2) G-P(sol) polarization free energy of solvation -83.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds