Wall clock time and date at job start Tue Mar 31 2020 22:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 O 1.42901 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.42895 * 113.99948 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.47654 * 125.81582 * 0.02810 * 8 6 5 10 10 C 1.54980 * 104.85618 * 203.99862 * 9 8 6 11 11 C 1.55326 * 101.66626 * 323.40121 * 10 9 8 12 12 C 1.46234 * 125.81112 * 179.72160 * 8 6 5 13 13 C 1.53894 * 110.90610 * 299.84028 * 12 8 6 14 14 C 1.54644 * 101.59147 * 144.74944 * 13 12 8 15 15 N 1.46846 * 105.50487 * 335.22387 * 14 13 12 16 16 C 1.46499 * 124.37041 * 196.89736 * 15 14 13 17 17 C 1.52997 * 109.47214 * 270.00176 * 16 15 14 18 18 C 1.50700 * 109.47255 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00007 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99917 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46928 * 89.99785 * 22 20 18 24 24 H 1.48497 * 109.47005 * 210.00226 * 22 20 18 25 25 H 1.48504 * 109.46683 * 329.99824 * 22 20 18 26 26 C 1.34654 * 111.26335 * 16.87491 * 15 14 13 27 27 O 1.21278 * 125.07405 * 179.19603 * 26 15 14 28 28 H 1.09003 * 109.47206 * 59.99956 * 1 2 3 29 29 H 1.08999 * 109.47466 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47107 * 300.00507 * 1 2 3 31 31 H 1.08991 * 109.46861 * 240.00084 * 2 1 3 32 32 H 1.08999 * 109.46719 * 119.99997 * 2 1 3 33 33 H 1.08995 * 109.47456 * 59.99578 * 3 2 1 34 34 H 1.09003 * 109.47124 * 300.00094 * 3 2 1 35 35 H 1.09001 * 109.46798 * 60.00190 * 5 4 3 36 36 H 1.09000 * 109.47736 * 300.00432 * 5 4 3 37 37 H 1.09001 * 110.35874 * 322.84353 * 9 8 6 38 38 H 1.09000 * 110.36035 * 85.14920 * 9 8 6 39 39 H 1.08995 * 110.98453 * 81.49928 * 10 9 8 40 40 H 1.08997 * 110.98659 * 205.30505 * 10 9 8 41 41 H 1.09003 * 110.75770 * 153.20006 * 11 10 9 42 42 H 1.08995 * 110.76069 * 276.39539 * 11 10 9 43 43 H 1.09000 * 111.00302 * 262.82640 * 13 12 8 44 44 H 1.08994 * 111.00363 * 26.67221 * 13 12 8 45 45 H 1.09003 * 110.24104 * 216.20990 * 14 13 12 46 46 H 1.09004 * 110.31379 * 94.26806 * 14 13 12 47 47 H 1.09004 * 109.46855 * 29.99378 * 16 15 14 48 48 H 1.08992 * 109.47533 * 149.99925 * 16 15 14 49 49 H 1.08999 * 109.47033 * 299.99923 * 17 16 15 50 50 H 1.09006 * 109.47201 * 59.99573 * 17 16 15 51 51 H 0.97005 * 119.99407 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0012 6 6 5.5526 2.6289 -0.0012 7 8 6.0741 1.5340 -0.0012 8 7 6.3165 3.7393 -0.0012 9 6 5.8199 5.1298 -0.0007 10 6 6.9747 5.9644 -0.6102 11 6 8.2228 5.2421 -0.0331 12 6 7.7785 3.7720 0.0046 13 6 8.3385 3.0726 1.2558 14 6 9.6223 2.4164 0.6966 15 7 9.3813 2.2458 -0.7419 16 6 10.1588 1.3592 -1.6112 17 6 11.3450 2.1292 -2.1951 18 6 12.1451 1.2170 -3.0889 19 1 11.8385 0.1907 -3.2263 20 6 13.2686 1.6929 -3.7311 21 7 13.6422 2.9426 -3.5632 22 14 14.2600 0.5624 -4.8396 23 1 13.7359 0.6449 -6.2265 24 1 15.6854 0.9786 -4.8233 25 1 14.1468 -0.8350 -4.3498 26 6 8.3533 3.0090 -1.1587 27 8 7.9502 3.0718 -2.3008 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 3.7290 3.2890 0.8888 36 1 3.7282 3.2887 -0.8912 37 1 4.9251 5.2131 -0.6176 38 1 5.6113 5.4576 1.0177 39 1 6.9618 5.9121 -1.6988 40 1 6.9304 6.9990 -0.2701 41 1 9.0826 5.3719 -0.6904 42 1 8.4480 5.6022 0.9707 43 1 8.5773 3.7971 2.0344 44 1 7.6437 2.3187 1.6258 45 1 9.7872 1.4479 1.1689 46 1 10.4818 3.0665 0.8605 47 1 10.5255 0.5121 -1.0315 48 1 9.5257 0.9982 -2.4216 49 1 10.9784 2.9764 -2.7747 50 1 11.9782 2.4903 -1.3846 51 1 14.4329 3.2772 -4.0148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269914218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:17 Heat of formation + Delta-G solvation = -140.761462 kcal Electronic energy + Delta-G solvation = -30620.528155 eV Core-core repulsion = 26518.773499 eV Total energy + Delta-G solvation = -4101.754655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49341 -40.37637 -38.91688 -38.10864 -37.51650 -35.66504 -34.62084 -33.73257 -32.84593 -30.90266 -29.44433 -28.78785 -27.03137 -26.59086 -25.24045 -23.68035 -23.42686 -22.51430 -22.30503 -21.03887 -19.72437 -18.74336 -18.47471 -17.67193 -17.49450 -17.33111 -17.07659 -16.86662 -16.51365 -16.35505 -15.88934 -15.61493 -15.06236 -14.85588 -14.81422 -14.58712 -14.52901 -14.31041 -14.28507 -13.92332 -13.61474 -13.38272 -13.23067 -13.09539 -13.04380 -12.92671 -12.90073 -12.81620 -12.53038 -12.23313 -12.18050 -12.06510 -11.92803 -11.85126 -11.81584 -11.62866 -11.46181 -10.98697 -10.88673 -10.70906 -10.64191 -9.70036 -9.62975 -8.27703 -6.40633 1.25386 1.35591 1.38537 1.48892 1.49979 1.74856 2.09742 2.38437 2.83082 3.05085 3.20161 3.32581 3.45382 3.64279 3.75628 3.94806 4.00920 4.04602 4.07863 4.16426 4.18045 4.20742 4.25935 4.39620 4.45633 4.53418 4.56038 4.59448 4.63330 4.68393 4.74673 4.77641 4.80937 4.82867 4.89032 4.96369 5.07438 5.14859 5.21185 5.24981 5.25545 5.29513 5.34315 5.39799 5.53385 5.75386 6.06850 6.11015 6.22375 6.39985 6.72587 7.03986 7.14902 7.28575 8.84502 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002656 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.566140 B =10538.720224 C =11785.584501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.405 6.405 5 C 0.059 3.941 6 C 0.515 3.485 7 O -0.568 6.568 8 N -0.598 5.598 9 C 0.094 3.906 10 C -0.129 4.129 11 C -0.110 4.110 12 C 0.134 3.866 13 C -0.119 4.119 14 C 0.095 3.905 15 N -0.617 5.617 16 C 0.144 3.856 17 C 0.030 3.970 18 C -0.549 4.549 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.929 5.929 22 Si 0.972 3.028 23 H -0.276 1.276 24 H -0.274 1.274 25 H -0.261 1.261 26 C 0.501 3.499 27 O -0.585 6.585 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.049 0.951 40 H 0.132 0.868 41 H 0.058 0.942 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.039 0.961 49 H -0.025 1.025 50 H 0.007 0.993 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.808 8.255 17.032 31.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.325 6.325 5 C -0.020 4.020 6 C 0.304 3.696 7 O -0.446 6.446 8 N -0.334 5.334 9 C -0.026 4.026 10 C -0.166 4.166 11 C -0.148 4.148 12 C 0.045 3.955 13 C -0.157 4.157 14 C -0.027 4.027 15 N -0.349 5.349 16 C 0.022 3.978 17 C -0.008 4.008 18 C -0.588 4.588 19 H 0.079 0.921 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.199 1.199 25 H -0.185 1.185 26 C 0.289 3.711 27 O -0.466 6.466 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.139 0.861 39 H 0.068 0.932 40 H 0.150 0.850 41 H 0.077 0.923 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.058 0.942 49 H -0.007 1.007 50 H 0.025 0.975 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.541 7.508 16.369 30.440 hybrid contribution 0.977 -0.708 -1.432 1.872 sum -23.564 6.800 14.937 28.717 Atomic orbital electron populations 1.21658 0.92564 1.02880 1.02874 1.21501 0.97345 0.95391 1.02359 1.22842 0.78521 0.98641 1.01913 1.87982 1.21881 1.26800 1.95787 1.22231 0.87850 0.86685 1.05191 1.20848 0.90301 0.82816 0.75609 1.90742 1.75569 1.28091 1.50160 1.48310 1.04309 1.07874 1.72857 1.22908 0.98070 0.77585 1.04040 1.22894 0.92451 1.01207 1.00078 1.22660 0.98926 0.88115 1.05106 1.21246 0.82277 0.98642 0.93343 1.22998 0.95319 1.01041 0.96310 1.22391 0.99121 1.02783 0.78404 1.48595 1.32351 1.42755 1.11211 1.21335 0.92003 0.92196 0.92279 1.19159 0.92169 0.94666 0.94765 1.21502 1.10662 0.97866 1.28725 0.92100 1.26011 0.98566 0.96894 0.98132 1.70102 1.26072 1.16349 1.44277 0.85354 0.77557 0.79058 0.78504 1.20156 1.19904 1.18465 1.21581 0.79960 0.79723 0.89865 1.90602 1.65103 1.67405 1.23441 0.91876 0.91668 0.91222 0.92891 0.91923 0.90638 0.91967 0.85948 0.88431 0.88544 0.86071 0.93207 0.84967 0.92301 0.84541 0.84018 0.90503 0.89503 0.89432 0.89723 0.94231 1.00690 0.97478 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.13 -2.09 6.30 30.60 0.19 -1.90 16 3 C 0.06 0.90 5.94 71.98 0.43 1.32 16 4 O -0.41 -10.34 9.88 -129.94 -1.28 -11.62 16 5 C 0.06 1.16 5.44 71.24 0.39 1.55 16 6 C 0.51 15.37 7.34 87.66 0.64 16.01 16 7 O -0.57 -23.66 15.03 16.01 0.24 -23.42 16 8 N -0.60 -14.79 2.90 -770.20 -2.23 -17.02 16 9 C 0.09 1.19 6.71 86.84 0.58 1.78 16 10 C -0.13 -2.00 7.10 32.07 0.23 -1.77 16 11 C -0.11 -2.26 6.07 31.60 0.19 -2.07 16 12 C 0.13 3.84 0.73 3.36 0.00 3.84 16 13 C -0.12 -2.80 6.19 31.46 0.19 -2.60 16 14 C 0.10 2.89 7.36 86.87 0.64 3.53 16 15 N -0.62 -26.56 2.94 -818.13 -2.41 -28.97 16 16 C 0.14 7.17 5.88 86.38 0.51 7.68 16 17 C 0.03 1.77 5.30 29.85 0.16 1.93 16 18 C -0.55 -33.50 9.11 25.60 0.23 -33.27 16 19 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 20 C 0.00 0.14 5.46 84.65 0.46 0.61 16 21 N -0.93 -58.47 13.29 21.45 0.28 -58.18 16 22 Si 0.97 46.26 29.54 68.60 2.03 48.29 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.50 21.91 5.87 87.62 0.51 22.43 16 27 O -0.59 -31.49 17.62 -3.02 -0.05 -31.55 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.52 7.86 -2.39 -0.02 1.50 16 37 H 0.10 0.90 7.51 -2.39 -0.02 0.88 16 38 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 42 H 0.14 1.53 7.45 -2.39 -0.02 1.51 16 43 H 0.14 1.89 7.45 -2.39 -0.02 1.87 16 44 H 0.08 2.06 6.75 -2.39 -0.02 2.04 16 45 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.08 3.82 8.14 -2.38 -0.02 3.81 16 48 H 0.04 2.16 7.94 -2.39 -0.02 2.15 16 49 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 50 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 51 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -96.38 412.31 3.55 -92.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.89 Total: 11.32 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.08 Total: 18.31 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -4.35 Total: -104.17 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -1.10 Total: -66.59 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -96.38 3.55 -92.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269914218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.927 kcal (2) G-P(sol) polarization free energy of solvation -96.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds