Wall clock time and date at job start Tue Mar 31 2020 22:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46614 * 2 1 4 4 O 1.42907 * 109.46724 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99883 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46821 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99525 * 180.02562 * 6 5 4 9 9 C 1.47133 * 125.61220 * 359.97280 * 8 6 5 10 10 C 1.54579 * 107.33157 * 180.96456 * 9 8 6 11 11 C 1.53702 * 102.78366 * 20.87675 * 10 9 8 12 12 C 1.53209 * 111.54517 * 206.02655 * 11 10 9 13 13 C 1.54803 * 101.39552 * 261.10713 * 12 11 10 14 14 N 1.46932 * 105.53761 * 335.83652 * 13 12 11 15 15 C 1.46496 * 124.37342 * 196.74308 * 14 13 12 16 16 C 1.52998 * 109.46847 * 90.00507 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 C 1.34886 * 111.24341 * 17.01372 * 14 13 12 26 26 O 1.21284 * 125.21926 * 178.48234 * 25 14 13 27 27 C 1.47703 * 125.60411 * 180.02562 * 8 6 5 28 28 H 1.09003 * 109.47197 * 300.00192 * 1 2 3 29 29 H 1.08999 * 109.47336 * 59.99731 * 1 2 3 30 30 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46987 * 240.00215 * 2 1 3 32 32 H 1.08993 * 109.47134 * 119.99877 * 2 1 3 33 33 H 1.09000 * 109.47658 * 60.00738 * 3 2 1 34 34 H 1.09001 * 109.47248 * 299.99434 * 3 2 1 35 35 H 1.09004 * 109.47019 * 59.99978 * 5 4 3 36 36 H 1.08997 * 109.47194 * 299.99472 * 5 4 3 37 37 H 1.08996 * 109.87344 * 300.39925 * 9 8 6 38 38 H 1.09001 * 109.87116 * 61.38099 * 9 8 6 39 39 H 1.09000 * 110.75045 * 262.55665 * 10 9 8 40 40 H 1.08996 * 110.75256 * 139.20466 * 10 9 8 41 41 H 1.08996 * 111.04683 * 143.07690 * 12 11 10 42 42 H 1.09003 * 111.03888 * 19.13609 * 12 11 10 43 43 H 1.08996 * 110.23115 * 216.81899 * 13 12 11 44 44 H 1.09001 * 110.22872 * 94.84959 * 13 12 11 45 45 H 1.09000 * 109.47627 * 330.00533 * 15 14 13 46 46 H 1.09002 * 109.46983 * 209.99929 * 15 14 13 47 47 H 1.09001 * 109.47671 * 59.99931 * 16 15 14 48 48 H 1.09006 * 109.47297 * 299.99651 * 16 15 14 49 49 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 50 50 H 1.08995 * 110.39675 * 38.56099 * 27 8 6 51 51 H 1.09010 * 110.48537 * 276.22684 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7480 -0.0001 6 6 5.5525 2.6290 -0.0001 7 8 6.0740 1.5342 -0.0001 8 7 6.3163 3.7394 0.0008 9 6 5.8164 5.1233 0.0014 10 6 7.0476 6.0577 -0.0223 11 6 8.1568 5.1449 -0.5690 12 6 9.5427 5.6025 -0.1030 13 6 10.0376 6.3888 -1.3412 14 7 9.2873 5.8422 -2.4802 15 6 9.6635 6.0275 -3.8838 16 6 10.5886 4.8890 -4.3184 17 6 10.9752 5.0792 -5.7626 18 1 10.5983 5.9271 -6.3153 19 6 11.8099 4.1708 -6.3781 20 7 12.2685 3.1381 -5.7053 21 14 12.2884 4.4062 -8.1684 22 1 13.1874 3.3019 -8.5898 23 1 11.0666 4.3999 -9.0124 24 1 12.9922 5.7043 -8.3261 25 6 8.2043 5.1528 -2.0664 26 8 7.3949 4.6187 -2.7948 27 6 7.7931 3.7673 0.0004 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.7288 3.2884 0.8904 36 1 3.7282 3.2894 -0.8896 37 1 5.2031 5.2960 -0.8828 38 1 5.2284 5.3043 0.9012 39 1 7.2909 6.4015 0.9830 40 1 6.8785 6.9024 -0.6901 41 1 10.1884 4.7487 0.1021 42 1 9.4675 6.2524 0.7689 43 1 11.1068 6.2328 -1.4842 44 1 9.8232 7.4511 -1.2235 45 1 10.1808 6.9800 -3.9988 46 1 8.7669 6.0238 -4.5038 47 1 10.0714 3.9365 -4.2036 48 1 11.4852 4.8926 -3.6985 49 1 12.0197 3.0157 -4.7757 50 1 8.1877 2.9764 -0.6375 51 1 8.1770 3.6626 1.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269914326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:29 Heat of formation + Delta-G solvation = -122.241258 kcal Electronic energy + Delta-G solvation = -29953.092069 eV Core-core repulsion = 25852.140510 eV Total energy + Delta-G solvation = -4100.951559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26779 -39.58644 -38.05155 -36.93881 -36.14487 -34.15853 -33.96335 -32.63640 -30.55605 -29.68073 -28.67391 -27.78792 -26.01071 -24.88454 -23.93477 -23.11791 -22.09061 -21.87578 -20.68536 -19.62662 -18.82703 -17.51546 -16.96316 -16.87499 -16.73919 -16.11753 -15.84244 -15.60849 -15.57116 -15.11804 -14.71541 -14.20972 -14.06222 -13.80449 -13.72360 -13.43401 -13.21172 -13.05455 -12.88492 -12.76108 -12.60040 -12.42307 -12.38907 -12.24480 -12.22717 -12.02390 -11.72525 -11.60872 -11.26732 -11.19562 -11.18427 -10.90936 -10.83464 -10.36945 -10.14915 -10.06849 -9.96140 -9.83269 -9.39813 -8.77171 -8.69647 -8.34428 -8.14697 -6.38386 -4.08487 2.45446 2.58229 2.78631 3.36648 3.44016 3.46729 3.57175 3.64799 4.05862 4.16756 4.20186 4.49461 4.54840 4.61793 4.64760 4.71293 4.77318 4.84621 4.89026 4.97473 4.98595 5.10469 5.13251 5.15370 5.20748 5.28560 5.38481 5.39657 5.42060 5.45910 5.59831 5.62463 5.65681 5.70559 5.75847 5.80339 5.88864 5.91240 5.91494 6.06268 6.29432 6.61202 6.80344 6.82417 7.23920 7.35234 7.41882 7.61906 8.09765 8.12642 8.41574 8.52544 8.84200 9.64635 11.02434 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.002449 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.954385 B =11428.887076 C =13034.064298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.052 3.948 6 C 0.533 3.467 7 O -0.517 6.517 8 N -0.612 5.612 9 C 0.100 3.900 10 C -0.104 4.104 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.102 3.898 14 N -0.614 5.614 15 C 0.136 3.864 16 C -0.001 4.001 17 C -0.604 4.604 18 H 0.050 0.950 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 1.071 2.929 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.526 3.474 26 O -0.518 6.518 27 C 0.136 3.864 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.011 0.989 48 H 0.008 0.992 49 H 0.269 0.731 50 H 0.084 0.916 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 7.220 19.203 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.028 4.028 6 C 0.320 3.680 7 O -0.391 6.391 8 N -0.348 5.348 9 C -0.023 4.023 10 C -0.142 4.142 11 C -0.119 4.119 12 C -0.155 4.155 13 C -0.022 4.022 14 N -0.347 5.347 15 C 0.016 3.984 16 C -0.039 4.039 17 C -0.643 4.643 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.544 5.544 21 Si 0.899 3.101 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.214 1.214 25 C 0.312 3.688 26 O -0.393 6.393 27 C 0.014 3.986 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.030 0.970 48 H 0.026 0.974 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.078 5.432 17.473 25.030 hybrid contribution -0.951 1.139 1.173 1.891 sum -18.029 6.571 18.646 26.756 Atomic orbital electron populations 1.21695 0.94670 1.02320 1.01945 1.21454 0.95570 0.95404 1.03783 1.22637 0.80485 0.98345 1.00199 1.88011 1.19559 1.25247 1.95420 1.22120 0.91367 0.86839 1.02424 1.19795 0.88261 0.83195 0.76718 1.90747 1.74418 1.25711 1.48233 1.48301 1.06900 1.05590 1.74048 1.22133 0.97197 0.81050 1.01899 1.22401 0.92475 0.97184 1.02181 1.21615 0.97385 0.97321 0.95596 1.22475 0.93911 1.01188 0.97967 1.22105 0.97738 0.97325 0.85039 1.48717 1.25834 1.52462 1.07700 1.21642 0.99677 1.00251 0.76833 1.19534 0.93721 0.93625 0.97031 1.21892 1.33335 1.12866 0.96188 0.93137 1.25881 0.93959 0.92909 1.06086 1.70777 1.43422 1.28498 1.11726 0.83521 0.76431 0.75891 0.74282 1.20709 1.21357 1.21401 1.19936 0.81373 0.78471 0.89040 1.90725 1.42305 1.45325 1.60941 1.21852 0.79883 0.95887 1.00990 0.92598 0.92477 0.91935 0.90822 0.90981 0.93250 0.93087 0.90488 0.90133 0.90868 0.90959 0.89080 0.89467 0.89339 0.88799 0.90013 0.91305 0.91397 0.90994 0.97046 0.97358 0.92085 0.89709 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -1.05 6.30 -26.73 -0.17 -1.22 16 3 C 0.06 0.55 5.94 37.16 0.22 0.77 16 4 O -0.36 -4.86 9.88 -55.14 -0.54 -5.40 16 5 C 0.05 0.59 5.61 36.01 0.20 0.79 16 6 C 0.53 8.14 7.93 -10.98 -0.09 8.05 16 7 O -0.52 -10.36 16.78 -14.35 -0.24 -10.60 16 8 N -0.61 -8.02 3.34 -170.96 -0.57 -8.59 16 9 C 0.10 0.92 6.45 -2.87 -0.02 0.90 16 10 C -0.10 -0.87 5.94 -25.54 -0.15 -1.03 16 11 C -0.11 -1.38 0.68 -155.39 -0.11 -1.49 16 12 C -0.12 -1.10 6.26 -25.67 -0.16 -1.26 16 13 C 0.10 1.22 7.37 -2.86 -0.02 1.20 16 14 N -0.61 -10.61 2.95 -172.56 -0.51 -11.12 16 15 C 0.14 2.86 5.89 -4.04 -0.02 2.83 16 16 C 0.00 -0.03 4.61 -27.88 -0.13 -0.16 16 17 C -0.60 -17.45 9.11 -34.44 -0.31 -17.77 16 18 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 19 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 20 N -0.91 -28.61 13.65 55.43 0.76 -27.85 16 21 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.53 9.31 6.72 -11.36 -0.08 9.23 16 26 O -0.52 -11.50 17.49 5.55 0.10 -11.40 16 27 C 0.14 1.82 5.74 -3.16 -0.02 1.80 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.49 7.74 -51.93 -0.40 0.09 16 40 H 0.09 0.73 7.99 -51.93 -0.42 0.31 16 41 H 0.09 0.85 7.97 -51.93 -0.41 0.43 16 42 H 0.09 0.55 7.62 -51.93 -0.40 0.16 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.61 7.93 -51.93 -0.41 1.20 16 47 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 48 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 49 H 0.27 8.50 7.22 -40.82 -0.29 8.21 16 50 H 0.08 1.45 7.95 -51.93 -0.41 1.03 16 51 H 0.08 0.86 8.04 -51.92 -0.42 0.44 16 LS Contribution 415.45 15.07 6.26 6.26 Total: -1.00 -39.48 415.45 -9.53 -49.01 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -9.12 Total: -3.42 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.58 Total: 2.49 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.32 Total: -47.57 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.69 Total: -27.41 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -39.48 -9.53 -49.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269914326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.229 kcal (2) G-P(sol) polarization free energy of solvation -39.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds