Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46614 * 2 1 4 4 O 1.42907 * 109.46724 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99883 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46821 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99525 * 180.02562 * 6 5 4 9 9 C 1.47133 * 125.61220 * 359.97280 * 8 6 5 10 10 C 1.54579 * 107.33157 * 180.96456 * 9 8 6 11 11 C 1.53702 * 102.78366 * 20.87675 * 10 9 8 12 12 C 1.53209 * 111.54517 * 206.02655 * 11 10 9 13 13 C 1.54803 * 101.39552 * 261.10713 * 12 11 10 14 14 N 1.46932 * 105.53761 * 335.83652 * 13 12 11 15 15 C 1.46496 * 124.37342 * 196.74308 * 14 13 12 16 16 C 1.52998 * 109.46847 * 90.00507 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 C 1.34886 * 111.24341 * 17.01372 * 14 13 12 26 26 O 1.21284 * 125.21926 * 178.48234 * 25 14 13 27 27 C 1.47703 * 125.60411 * 180.02562 * 8 6 5 28 28 H 1.09003 * 109.47197 * 300.00192 * 1 2 3 29 29 H 1.08999 * 109.47336 * 59.99731 * 1 2 3 30 30 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46987 * 240.00215 * 2 1 3 32 32 H 1.08993 * 109.47134 * 119.99877 * 2 1 3 33 33 H 1.09000 * 109.47658 * 60.00738 * 3 2 1 34 34 H 1.09001 * 109.47248 * 299.99434 * 3 2 1 35 35 H 1.09004 * 109.47019 * 59.99978 * 5 4 3 36 36 H 1.08997 * 109.47194 * 299.99472 * 5 4 3 37 37 H 1.08996 * 109.87344 * 300.39925 * 9 8 6 38 38 H 1.09001 * 109.87116 * 61.38099 * 9 8 6 39 39 H 1.09000 * 110.75045 * 262.55665 * 10 9 8 40 40 H 1.08996 * 110.75256 * 139.20466 * 10 9 8 41 41 H 1.08996 * 111.04683 * 143.07690 * 12 11 10 42 42 H 1.09003 * 111.03888 * 19.13609 * 12 11 10 43 43 H 1.08996 * 110.23115 * 216.81899 * 13 12 11 44 44 H 1.09001 * 110.22872 * 94.84959 * 13 12 11 45 45 H 1.09000 * 109.47627 * 330.00533 * 15 14 13 46 46 H 1.09002 * 109.46983 * 209.99929 * 15 14 13 47 47 H 1.09001 * 109.47671 * 59.99931 * 16 15 14 48 48 H 1.09006 * 109.47297 * 299.99651 * 16 15 14 49 49 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 50 50 H 1.08995 * 110.39675 * 38.56099 * 27 8 6 51 51 H 1.09010 * 110.48537 * 276.22684 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7480 -0.0001 6 6 5.5525 2.6290 -0.0001 7 8 6.0740 1.5342 -0.0001 8 7 6.3163 3.7394 0.0008 9 6 5.8164 5.1233 0.0014 10 6 7.0476 6.0577 -0.0223 11 6 8.1568 5.1449 -0.5690 12 6 9.5427 5.6025 -0.1030 13 6 10.0376 6.3888 -1.3412 14 7 9.2873 5.8422 -2.4802 15 6 9.6635 6.0275 -3.8838 16 6 10.5886 4.8890 -4.3184 17 6 10.9752 5.0792 -5.7626 18 1 10.5983 5.9271 -6.3153 19 6 11.8099 4.1708 -6.3781 20 7 12.2685 3.1381 -5.7053 21 14 12.2884 4.4062 -8.1684 22 1 13.1874 3.3019 -8.5898 23 1 11.0666 4.3999 -9.0124 24 1 12.9922 5.7043 -8.3261 25 6 8.2043 5.1528 -2.0664 26 8 7.3949 4.6187 -2.7948 27 6 7.7931 3.7673 0.0004 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.7288 3.2884 0.8904 36 1 3.7282 3.2894 -0.8896 37 1 5.2031 5.2960 -0.8828 38 1 5.2284 5.3043 0.9012 39 1 7.2909 6.4015 0.9830 40 1 6.8785 6.9024 -0.6901 41 1 10.1884 4.7487 0.1021 42 1 9.4675 6.2524 0.7689 43 1 11.1068 6.2328 -1.4842 44 1 9.8232 7.4511 -1.2235 45 1 10.1808 6.9800 -3.9988 46 1 8.7669 6.0238 -4.5038 47 1 10.0714 3.9365 -4.2036 48 1 11.4852 4.8926 -3.6985 49 1 12.0197 3.0157 -4.7757 50 1 8.1877 2.9764 -0.6375 51 1 8.1770 3.6626 1.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269914326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = -150.132239 kcal Electronic energy + Delta-G solvation = -29954.301513 eV Core-core repulsion = 25852.140510 eV Total energy + Delta-G solvation = -4102.161003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38177 -40.72911 -38.98112 -38.11511 -37.58867 -36.05102 -34.65195 -34.19011 -31.90379 -30.67490 -29.99023 -28.74952 -26.94107 -26.51801 -25.16723 -24.08241 -23.73286 -22.52807 -22.00678 -20.62298 -20.09888 -19.08640 -18.51828 -17.82599 -17.71342 -17.46218 -16.81222 -16.71498 -16.57871 -16.32464 -15.73054 -15.68083 -15.17217 -14.98755 -14.93862 -14.83196 -14.63776 -14.34144 -14.24854 -13.93025 -13.69399 -13.61714 -13.27855 -13.11040 -13.08166 -13.02791 -12.92765 -12.74784 -12.53601 -12.39032 -12.14852 -12.04718 -11.95293 -11.88038 -11.83845 -11.69688 -11.00621 -10.98402 -10.75289 -10.67818 -10.62574 -9.80157 -9.65483 -8.79185 -6.50923 1.37661 1.45356 1.48406 1.57957 1.60135 1.76904 2.05781 2.53059 2.77472 3.07376 3.15781 3.17414 3.32864 3.60448 3.81545 3.92536 3.98188 4.01373 4.12532 4.12865 4.14140 4.19109 4.28682 4.34457 4.36897 4.43276 4.49675 4.51277 4.55886 4.60687 4.63183 4.69352 4.70865 4.80764 4.87837 4.97866 5.02815 5.05740 5.12422 5.13177 5.15520 5.18967 5.19455 5.32017 5.51997 5.88098 6.03388 6.05942 6.18849 6.36863 6.42834 7.00293 7.11207 7.33714 8.60954 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.002449 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.954385 B =11428.887076 C =13034.064298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.405 6.405 5 C 0.058 3.942 6 C 0.517 3.483 7 O -0.585 6.585 8 N -0.612 5.612 9 C 0.090 3.910 10 C -0.092 4.092 11 C -0.105 4.105 12 C -0.103 4.103 13 C 0.092 3.908 14 N -0.622 5.622 15 C 0.151 3.849 16 C 0.007 3.993 17 C -0.619 4.619 18 H 0.061 0.939 19 C -0.043 4.043 20 N -0.935 5.935 21 Si 1.123 2.877 22 H -0.284 1.284 23 H -0.272 1.272 24 H -0.257 1.257 25 C 0.508 3.492 26 O -0.579 6.579 27 C 0.131 3.869 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.050 0.950 47 H -0.039 1.039 48 H -0.002 1.002 49 H 0.251 0.749 50 H 0.027 0.973 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.935 11.197 21.418 30.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.021 4.021 4 O -0.324 6.324 5 C -0.021 4.021 6 C 0.306 3.694 7 O -0.465 6.465 8 N -0.346 5.346 9 C -0.031 4.031 10 C -0.130 4.130 11 C -0.109 4.109 12 C -0.141 4.141 13 C -0.030 4.030 14 N -0.354 5.354 15 C 0.029 3.971 16 C -0.031 4.031 17 C -0.657 4.657 18 H 0.079 0.921 19 C -0.240 4.240 20 N -0.572 5.572 21 Si 0.942 3.058 22 H -0.210 1.210 23 H -0.197 1.197 24 H -0.181 1.181 25 C 0.297 3.703 26 O -0.459 6.459 27 C 0.008 3.992 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.170 0.830 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.068 0.932 47 H -0.021 1.021 48 H 0.017 0.983 49 H 0.060 0.940 50 H 0.046 0.954 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.134 9.504 19.745 28.444 hybrid contribution -0.616 -0.113 0.471 0.783 sum -18.750 9.391 20.216 29.128 Atomic orbital electron populations 1.21659 0.92535 1.02949 1.02843 1.21504 0.97373 0.95205 1.02467 1.22865 0.78525 0.98827 1.01851 1.87975 1.21922 1.26748 1.95777 1.22221 0.88286 0.86644 1.04926 1.20711 0.90218 0.82773 0.75666 1.90701 1.75866 1.28288 1.51615 1.48487 1.06777 1.06980 1.72399 1.22519 0.98169 0.78666 1.03741 1.22582 0.89746 0.95973 1.04706 1.21577 1.00767 0.97748 0.90833 1.22625 0.91343 1.01594 0.98516 1.22539 0.96795 0.99719 0.83897 1.48831 1.26469 1.52647 1.07481 1.21158 0.97598 0.98954 0.79432 1.19397 0.93840 0.93429 0.96420 1.22370 1.32863 1.13025 0.97473 0.92113 1.27651 0.93754 0.92117 1.10429 1.70929 1.45080 1.30146 1.11046 0.82896 0.76930 0.77105 0.68858 1.20963 1.19745 1.18130 1.21092 0.80464 0.76972 0.91790 1.90676 1.44557 1.47496 1.63188 1.21926 0.80619 0.95022 1.01606 0.91215 0.91980 0.91513 0.92796 0.91748 0.90625 0.92163 0.86060 0.88944 0.91968 0.86204 0.83962 0.88913 0.90015 0.83025 0.90777 0.87301 0.88704 0.93163 1.02065 0.98334 0.94011 0.95390 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -2.19 6.30 30.59 0.19 -2.00 16 3 C 0.06 0.95 5.94 71.98 0.43 1.38 16 4 O -0.40 -10.99 9.88 -129.94 -1.28 -12.27 16 5 C 0.06 1.27 5.61 71.24 0.40 1.67 16 6 C 0.52 16.32 7.93 87.66 0.69 17.01 16 7 O -0.58 -25.38 16.78 16.03 0.27 -25.11 16 8 N -0.61 -15.74 3.34 -813.18 -2.72 -18.46 16 9 C 0.09 1.36 6.45 86.80 0.56 1.92 16 10 C -0.09 -1.11 5.94 31.37 0.19 -0.92 16 11 C -0.11 -2.33 0.68 -52.75 -0.04 -2.37 16 12 C -0.10 -1.56 6.26 31.28 0.20 -1.36 16 13 C 0.09 1.96 7.37 86.91 0.64 2.60 16 14 N -0.62 -21.62 2.95 -818.18 -2.41 -24.04 16 15 C 0.15 6.50 5.89 86.38 0.51 7.01 16 16 C 0.01 0.40 4.61 29.85 0.14 0.53 16 17 C -0.62 -36.75 9.11 25.60 0.23 -36.51 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 19 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 20 N -0.94 -61.30 13.65 21.45 0.29 -61.00 16 21 Si 1.12 51.76 29.90 68.60 2.05 53.82 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 C 0.51 18.49 6.72 87.37 0.59 19.08 16 26 O -0.58 -27.61 17.49 -3.04 -0.05 -27.66 16 27 C 0.13 3.52 5.74 86.29 0.50 4.01 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.14 0.38 7.74 -2.39 -0.02 0.36 16 40 H 0.09 1.11 7.99 -2.39 -0.02 1.09 16 41 H 0.08 1.38 7.97 -2.39 -0.02 1.36 16 42 H 0.15 0.66 7.62 -2.39 -0.02 0.64 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 47 H -0.04 -2.53 8.01 -2.39 -0.02 -2.55 16 48 H 0.00 -0.09 8.01 -2.38 -0.02 -0.11 16 49 H 0.25 16.89 7.22 -92.71 -0.67 16.22 16 50 H 0.03 1.05 7.95 -2.39 -0.02 1.03 16 51 H 0.11 2.25 8.04 -2.38 -0.02 2.23 16 Total: -1.00 -98.98 415.45 3.53 -95.44 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.99 Total: 10.21 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.40 Total: 9.08 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.84 Total: -103.50 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: -1.07 Total: -65.05 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.82 kcal Total: -98.98 3.53 -95.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269914326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.691 kcal (2) G-P(sol) polarization free energy of solvation -98.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds