Wall clock time and date at job start Tue Mar 31 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00099 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.47129 * 125.60832 * 0.02562 * 8 6 5 10 10 C 1.54581 * 107.32948 * 179.06447 * 9 8 6 11 11 C 1.53707 * 102.78324 * 339.11918 * 10 9 8 12 12 C 1.53206 * 111.53840 * 153.98099 * 11 10 9 13 13 C 1.54796 * 101.39134 * 145.79464 * 12 11 10 14 14 N 1.46926 * 105.54683 * 335.83630 * 13 12 11 15 15 C 1.46489 * 124.38252 * 196.76680 * 14 13 12 16 16 C 1.52997 * 109.47410 * 269.95203 * 15 14 13 17 17 C 1.50707 * 109.47586 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99220 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46900 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47333 * 119.99631 * 21 19 17 24 24 H 1.48501 * 109.46473 * 239.99699 * 21 19 17 25 25 C 1.34890 * 111.23950 * 16.74547 * 14 13 12 26 26 O 1.21283 * 125.22281 * 178.72717 * 25 14 13 27 27 C 1.47709 * 125.60485 * 179.71740 * 8 6 5 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 1.09001 * 109.46918 * 299.99649 * 5 4 3 36 36 H 1.08999 * 109.46857 * 59.99535 * 5 4 3 37 37 H 1.09000 * 109.87486 * 298.50478 * 9 8 6 38 38 H 1.09007 * 109.87554 * 59.48812 * 9 8 6 39 39 H 1.09001 * 110.75193 * 97.44835 * 10 9 8 40 40 H 1.09005 * 110.74990 * 220.79307 * 10 9 8 41 41 H 1.09004 * 111.04029 * 263.82040 * 12 11 10 42 42 H 1.09002 * 111.04593 * 27.76445 * 12 11 10 43 43 H 1.08997 * 110.23719 * 216.81533 * 13 12 11 44 44 H 1.09006 * 110.30536 * 94.89251 * 13 12 11 45 45 H 1.09004 * 109.47118 * 29.95230 * 15 14 13 46 46 H 1.08997 * 109.47560 * 149.95077 * 15 14 13 47 47 H 1.09004 * 109.47002 * 300.00098 * 16 15 14 48 48 H 1.09001 * 109.47291 * 59.99709 * 16 15 14 49 49 H 0.97000 * 119.99858 * 180.02562 * 20 19 17 50 50 H 1.09000 * 110.39057 * 321.40814 * 27 8 6 51 51 H 1.09000 * 110.38985 * 83.80209 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5338 -0.0001 8 7 6.3165 3.7391 0.0008 9 6 5.8167 5.1229 0.0025 10 6 7.0480 6.0571 0.0273 11 6 8.1574 5.1434 0.5722 12 6 9.5430 5.6019 0.1064 13 6 10.4138 5.2384 1.3335 14 7 9.4921 5.2154 2.4775 15 6 9.9128 5.2640 3.8798 16 6 10.1294 3.8405 4.3970 17 6 10.5628 3.8904 5.8395 18 1 10.6732 4.8424 6.3374 19 6 10.8194 2.7209 6.5231 20 7 10.6854 1.5617 5.9166 21 14 11.3559 2.7828 8.3114 22 1 11.4299 4.1974 8.7572 23 1 10.3725 2.0503 9.1489 24 1 12.6923 2.1501 8.4493 25 6 8.2084 5.1444 2.0694 26 8 7.2435 5.0893 2.8022 27 6 7.7934 3.7668 0.0068 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7284 3.2893 -0.8896 36 1 3.7290 3.2882 0.8903 37 1 5.2304 5.3062 -0.8979 38 1 5.2016 5.2936 0.8861 39 1 7.2909 6.4026 -0.9776 40 1 6.8791 6.9009 0.6964 41 1 9.8617 5.0488 -0.7772 42 1 9.5580 6.6758 -0.0798 43 1 11.1848 5.9936 1.4857 44 1 10.8695 4.2576 1.1968 45 1 10.8437 5.8255 3.9607 46 1 9.1409 5.7529 4.4741 47 1 9.1985 3.2790 4.3161 48 1 10.9013 3.3515 3.8028 49 1 10.8655 0.7389 6.3976 50 1 8.1854 2.9767 0.6473 51 1 8.1793 3.6616 -1.0071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269914327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:33 Heat of formation + Delta-G solvation = -118.268470 kcal Electronic energy + Delta-G solvation = -30069.153559 eV Core-core repulsion = 25968.374273 eV Total energy + Delta-G solvation = -4100.779286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19877 -39.50910 -37.97715 -36.85341 -36.05448 -33.94230 -33.86404 -32.50589 -30.63477 -29.52134 -28.74187 -27.69976 -25.97867 -25.13346 -24.18792 -22.85634 -21.94954 -21.81245 -20.44534 -19.56429 -18.73046 -17.43863 -16.85319 -16.76019 -16.51286 -16.05265 -15.69551 -15.52325 -15.46063 -14.91325 -14.64762 -14.40440 -14.12197 -13.97502 -13.66873 -13.24951 -13.18872 -12.92457 -12.77961 -12.69745 -12.42039 -12.34951 -12.32049 -12.17574 -12.16510 -11.93424 -11.60614 -11.33594 -11.19744 -11.13519 -11.07080 -10.94384 -10.92481 -10.65120 -10.00441 -9.89297 -9.85897 -9.76684 -9.36597 -9.10194 -8.71066 -8.36396 -8.04934 -6.00264 -4.04536 2.51475 2.64389 2.88616 3.31699 3.38132 3.41717 3.48716 3.64614 4.11727 4.25564 4.29064 4.46552 4.59169 4.67774 4.68796 4.77382 4.85787 4.92225 4.97393 5.04587 5.05481 5.17112 5.19340 5.21441 5.31131 5.35582 5.39693 5.44236 5.50883 5.55789 5.64620 5.67715 5.70976 5.79507 5.85135 5.86317 5.94916 5.97841 6.03466 6.12937 6.42770 6.79642 6.87218 6.95991 7.41096 7.47443 7.67105 7.83583 7.98679 8.15863 8.33982 8.61282 9.02422 9.59667 11.11037 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.002826 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.809173 B = 9905.362314 C =12148.702933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.052 3.948 6 C 0.532 3.468 7 O -0.515 6.515 8 N -0.615 5.615 9 C 0.101 3.899 10 C -0.104 4.104 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.099 3.901 14 N -0.611 5.611 15 C 0.129 3.871 16 C 0.011 3.989 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.528 3.472 26 O -0.521 6.521 27 C 0.136 3.864 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.020 0.980 48 H 0.017 0.983 49 H 0.261 0.739 50 H 0.085 0.915 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.156 9.250 -19.671 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.027 4.027 6 C 0.319 3.681 7 O -0.389 6.389 8 N -0.351 5.351 9 C -0.022 4.022 10 C -0.142 4.142 11 C -0.120 4.120 12 C -0.154 4.154 13 C -0.024 4.024 14 N -0.344 5.344 15 C 0.009 3.991 16 C -0.027 4.027 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C 0.313 3.687 26 O -0.397 6.397 27 C 0.013 3.987 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.293 8.176 -19.148 24.702 hybrid contribution 0.277 0.208 1.091 1.144 sum -13.016 8.384 -18.057 23.786 Atomic orbital electron populations 1.21692 0.94706 1.02293 1.01926 1.21453 0.95537 0.95435 1.03800 1.22630 0.80515 0.98320 1.00187 1.88011 1.19532 1.25259 1.95419 1.22118 0.91332 0.86827 1.02471 1.19820 0.88310 0.83204 0.76775 1.90760 1.74405 1.25685 1.48080 1.48359 1.06838 1.05771 1.74170 1.22136 0.97327 0.80834 1.01898 1.22365 0.92507 0.97355 1.01971 1.21575 0.97343 0.97310 0.95726 1.22469 0.92143 1.02501 0.98319 1.22138 0.92904 1.02408 0.84974 1.48680 1.06189 1.71891 1.07648 1.21812 0.98980 1.01533 0.76762 1.19414 0.97513 0.89938 0.95832 1.21099 1.46181 0.92685 0.96237 0.92447 1.25017 0.95489 0.95474 0.98347 1.69987 1.48818 0.97377 1.36708 0.86501 0.78207 0.78114 0.84964 1.19681 1.20939 1.20976 1.19888 0.83400 0.76443 0.88956 1.90696 1.38370 1.49950 1.60654 1.21834 0.80012 0.95788 1.01064 0.92623 0.91960 0.92474 0.90996 0.90791 0.93065 0.93290 0.90483 0.90060 0.91207 0.90501 0.89432 0.89338 0.88901 0.89401 0.90341 0.90838 0.91547 0.91180 0.96134 0.96457 0.92924 0.89611 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.15 0.37 -0.62 16 2 C -0.12 -1.13 6.30 -26.74 -0.17 -1.30 16 3 C 0.06 0.58 5.94 37.16 0.22 0.80 16 4 O -0.36 -5.09 9.88 -55.14 -0.54 -5.64 16 5 C 0.05 0.63 5.61 36.00 0.20 0.83 16 6 C 0.53 8.43 7.93 -10.99 -0.09 8.35 16 7 O -0.52 -10.65 16.78 -14.35 -0.24 -10.89 16 8 N -0.61 -8.37 3.34 -171.10 -0.57 -8.94 16 9 C 0.10 0.99 6.24 -2.87 -0.02 0.98 16 10 C -0.10 -0.93 5.80 -25.53 -0.15 -1.08 16 11 C -0.12 -1.40 0.67 -155.51 -0.10 -1.51 16 12 C -0.12 -1.04 6.27 -25.68 -0.16 -1.20 16 13 C 0.10 1.24 7.37 -2.86 -0.02 1.22 16 14 N -0.61 -10.78 2.95 -172.58 -0.51 -11.29 16 15 C 0.13 2.72 5.88 -4.05 -0.02 2.69 16 16 C 0.01 0.29 5.30 -27.88 -0.15 0.14 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.53 9.40 6.75 -11.36 -0.08 9.33 16 26 O -0.52 -11.40 17.27 5.55 0.10 -11.30 16 27 C 0.14 1.83 5.88 -3.27 -0.02 1.81 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 39 H 0.09 0.52 8.04 -51.93 -0.42 0.11 16 40 H 0.09 0.82 8.00 -51.93 -0.42 0.40 16 41 H 0.09 0.63 7.63 -51.93 -0.40 0.23 16 42 H 0.09 0.61 7.96 -51.93 -0.41 0.19 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.55 7.96 -51.93 -0.41 1.14 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 50 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 51 H 0.08 0.87 7.74 -51.93 -0.40 0.47 16 LS Contribution 416.36 15.07 6.27 6.27 Total: -1.00 -39.01 416.36 -9.55 -48.56 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -9.18 Total: -3.60 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.60 Total: 6.72 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.34 Total: -47.18 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.69 Total: -27.83 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -39.01 -9.55 -48.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269914327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.704 kcal (2) G-P(sol) polarization free energy of solvation -39.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds