Wall clock time and date at job start Tue Mar 31 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00099 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.47129 * 125.60832 * 0.02562 * 8 6 5 10 10 C 1.54581 * 107.32948 * 179.06447 * 9 8 6 11 11 C 1.53707 * 102.78324 * 339.11918 * 10 9 8 12 12 C 1.53206 * 111.53840 * 153.98099 * 11 10 9 13 13 C 1.54796 * 101.39134 * 145.79464 * 12 11 10 14 14 N 1.46926 * 105.54683 * 335.83630 * 13 12 11 15 15 C 1.46489 * 124.38252 * 196.76680 * 14 13 12 16 16 C 1.52997 * 109.47410 * 269.95203 * 15 14 13 17 17 C 1.50707 * 109.47586 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99220 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46900 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47333 * 119.99631 * 21 19 17 24 24 H 1.48501 * 109.46473 * 239.99699 * 21 19 17 25 25 C 1.34890 * 111.23950 * 16.74547 * 14 13 12 26 26 O 1.21283 * 125.22281 * 178.72717 * 25 14 13 27 27 C 1.47709 * 125.60485 * 179.71740 * 8 6 5 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 1.09001 * 109.46918 * 299.99649 * 5 4 3 36 36 H 1.08999 * 109.46857 * 59.99535 * 5 4 3 37 37 H 1.09000 * 109.87486 * 298.50478 * 9 8 6 38 38 H 1.09007 * 109.87554 * 59.48812 * 9 8 6 39 39 H 1.09001 * 110.75193 * 97.44835 * 10 9 8 40 40 H 1.09005 * 110.74990 * 220.79307 * 10 9 8 41 41 H 1.09004 * 111.04029 * 263.82040 * 12 11 10 42 42 H 1.09002 * 111.04593 * 27.76445 * 12 11 10 43 43 H 1.08997 * 110.23719 * 216.81533 * 13 12 11 44 44 H 1.09006 * 110.30536 * 94.89251 * 13 12 11 45 45 H 1.09004 * 109.47118 * 29.95230 * 15 14 13 46 46 H 1.08997 * 109.47560 * 149.95077 * 15 14 13 47 47 H 1.09004 * 109.47002 * 300.00098 * 16 15 14 48 48 H 1.09001 * 109.47291 * 59.99709 * 16 15 14 49 49 H 0.97000 * 119.99858 * 180.02562 * 20 19 17 50 50 H 1.09000 * 110.39057 * 321.40814 * 27 8 6 51 51 H 1.09000 * 110.38985 * 83.80209 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5338 -0.0001 8 7 6.3165 3.7391 0.0008 9 6 5.8167 5.1229 0.0025 10 6 7.0480 6.0571 0.0273 11 6 8.1574 5.1434 0.5722 12 6 9.5430 5.6019 0.1064 13 6 10.4138 5.2384 1.3335 14 7 9.4921 5.2154 2.4775 15 6 9.9128 5.2640 3.8798 16 6 10.1294 3.8405 4.3970 17 6 10.5628 3.8904 5.8395 18 1 10.6732 4.8424 6.3374 19 6 10.8194 2.7209 6.5231 20 7 10.6854 1.5617 5.9166 21 14 11.3559 2.7828 8.3114 22 1 11.4299 4.1974 8.7572 23 1 10.3725 2.0503 9.1489 24 1 12.6923 2.1501 8.4493 25 6 8.2084 5.1444 2.0694 26 8 7.2435 5.0893 2.8022 27 6 7.7934 3.7668 0.0068 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7284 3.2893 -0.8896 36 1 3.7290 3.2882 0.8903 37 1 5.2304 5.3062 -0.8979 38 1 5.2016 5.2936 0.8861 39 1 7.2909 6.4026 -0.9776 40 1 6.8791 6.9009 0.6964 41 1 9.8617 5.0488 -0.7772 42 1 9.5580 6.6758 -0.0798 43 1 11.1848 5.9936 1.4857 44 1 10.8695 4.2576 1.1968 45 1 10.8437 5.8255 3.9607 46 1 9.1409 5.7529 4.4741 47 1 9.1985 3.2790 4.3161 48 1 10.9013 3.3515 3.8028 49 1 10.8655 0.7389 6.3976 50 1 8.1854 2.9767 0.6473 51 1 8.1793 3.6616 -1.0071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269914327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:32 Heat of formation + Delta-G solvation = -145.792439 kcal Electronic energy + Delta-G solvation = -30070.347088 eV Core-core repulsion = 25968.374273 eV Total energy + Delta-G solvation = -4101.972815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33062 -40.69796 -38.95664 -38.06590 -37.48518 -35.74158 -34.64224 -34.15965 -32.08102 -30.57258 -30.05569 -28.68069 -27.14143 -26.63883 -25.29186 -23.97990 -23.45084 -22.52044 -21.84489 -20.61050 -20.02625 -18.73720 -18.48360 -17.82743 -17.64387 -17.19163 -16.99205 -16.74596 -16.58521 -16.52066 -16.01821 -15.61566 -15.00048 -14.91406 -14.86506 -14.52775 -14.50339 -14.37509 -14.01128 -13.86994 -13.81160 -13.62180 -13.17632 -13.07546 -13.07173 -12.97002 -12.91985 -12.90625 -12.56065 -12.42392 -12.09680 -12.00946 -11.89086 -11.83395 -11.81265 -11.68239 -11.42956 -10.99157 -10.74447 -10.68607 -10.61149 -9.79214 -9.57365 -8.28437 -6.42885 1.34633 1.37002 1.39368 1.49948 1.52653 1.61793 2.12592 2.37572 2.79260 3.04902 3.21835 3.27231 3.34043 3.66417 3.83167 3.97885 3.99294 4.02556 4.13462 4.15636 4.23916 4.28216 4.34108 4.37513 4.40913 4.51693 4.54939 4.59252 4.60855 4.62064 4.71754 4.75884 4.81452 4.82634 4.92618 4.99577 5.09182 5.13017 5.19617 5.20557 5.21707 5.28568 5.32628 5.39464 5.55476 5.77706 6.04345 6.09172 6.27690 6.37372 6.73978 7.00841 7.19069 7.28076 8.84117 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.002826 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.809173 B = 9905.362314 C =12148.702933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.405 6.405 5 C 0.058 3.942 6 C 0.516 3.484 7 O -0.583 6.583 8 N -0.615 5.615 9 C 0.092 3.908 10 C -0.093 4.093 11 C -0.107 4.107 12 C -0.095 4.095 13 C 0.086 3.914 14 N -0.622 5.622 15 C 0.144 3.856 16 C 0.023 3.977 17 C -0.543 4.543 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.937 5.937 21 Si 0.975 3.025 22 H -0.254 1.254 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.508 3.492 26 O -0.576 6.576 27 C 0.130 3.870 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.138 0.862 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.054 0.946 47 H -0.037 1.037 48 H -0.004 1.004 49 H 0.264 0.736 50 H 0.029 0.971 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 12.799 -21.787 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.021 4.021 4 O -0.324 6.324 5 C -0.021 4.021 6 C 0.305 3.695 7 O -0.463 6.463 8 N -0.350 5.350 9 C -0.029 4.029 10 C -0.131 4.131 11 C -0.111 4.111 12 C -0.132 4.132 13 C -0.036 4.036 14 N -0.353 5.353 15 C 0.022 3.978 16 C -0.015 4.015 17 C -0.581 4.581 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.177 1.177 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.297 3.703 26 O -0.456 6.456 27 C 0.007 3.993 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.156 0.844 40 H 0.107 0.893 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.072 0.928 47 H -0.019 1.019 48 H 0.014 0.986 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.371 11.802 -21.305 27.784 hybrid contribution 0.310 -0.939 1.772 2.030 sum -13.060 10.863 -19.532 25.886 Atomic orbital electron populations 1.21656 0.92501 1.02953 1.02847 1.21504 0.97401 0.95194 1.02457 1.22864 0.78539 0.98837 1.01847 1.87975 1.21926 1.26746 1.95774 1.22223 0.88362 0.86631 1.04913 1.20717 0.90240 0.82804 0.75737 1.90714 1.75849 1.28244 1.51495 1.48561 1.06938 1.07006 1.72477 1.22489 0.98310 0.78629 1.03515 1.22517 0.90061 0.96097 1.04393 1.21551 1.01032 0.97527 0.90976 1.22609 0.88181 1.05252 0.97196 1.22532 0.93469 1.02770 0.84823 1.48826 1.07630 1.71420 1.07473 1.21334 0.99799 0.97494 0.79173 1.19224 0.93696 0.92831 0.95790 1.21588 1.45896 0.93432 0.97230 0.91076 1.26133 0.95309 0.94891 1.03939 1.70155 1.50034 0.98348 1.39103 0.85258 0.77871 0.79051 0.78009 1.17735 1.20882 1.19779 1.21064 0.82614 0.74877 0.91763 1.90645 1.40052 1.52100 1.62815 1.21959 0.80470 0.94940 1.01897 0.91153 0.91498 0.92022 0.91687 0.92891 0.92239 0.90554 0.85984 0.89071 0.86469 0.92049 0.84354 0.89305 0.85587 0.85531 0.87588 0.92335 0.88654 0.92791 1.01883 0.98582 0.92743 0.95241 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.13 -2.36 6.30 30.59 0.19 -2.17 16 3 C 0.05 1.03 5.94 71.98 0.43 1.46 16 4 O -0.40 -11.63 9.88 -129.94 -1.28 -12.91 16 5 C 0.06 1.35 5.61 71.24 0.40 1.75 16 6 C 0.52 17.01 7.93 87.66 0.69 17.70 16 7 O -0.58 -26.13 16.78 16.01 0.27 -25.86 16 8 N -0.62 -16.58 3.34 -813.61 -2.72 -19.30 16 9 C 0.09 1.56 6.24 86.80 0.54 2.10 16 10 C -0.09 -1.28 5.80 31.37 0.18 -1.10 16 11 C -0.11 -2.40 0.67 -52.83 -0.04 -2.44 16 12 C -0.09 -1.30 6.27 31.28 0.20 -1.10 16 13 C 0.09 2.02 7.37 86.91 0.64 2.66 16 14 N -0.62 -22.43 2.95 -818.23 -2.41 -24.85 16 15 C 0.14 6.29 5.88 86.38 0.51 6.80 16 16 C 0.02 1.29 5.30 29.85 0.16 1.45 16 17 C -0.54 -32.32 9.11 25.60 0.23 -32.08 16 18 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 19 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 20 N -0.94 -60.99 13.29 21.45 0.28 -60.70 16 21 Si 0.97 46.06 29.54 68.60 2.03 48.08 16 22 H -0.25 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 C 0.51 18.68 6.75 87.36 0.59 19.27 16 26 O -0.58 -26.86 17.27 -3.04 -0.05 -26.92 16 27 C 0.13 3.51 5.88 86.22 0.51 4.02 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.14 0.62 8.04 -2.39 -0.02 0.60 16 40 H 0.09 1.31 8.00 -2.38 -0.02 1.29 16 41 H 0.13 1.00 7.63 -2.39 -0.02 0.99 16 42 H 0.13 0.89 7.96 -2.39 -0.02 0.87 16 43 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 46 H 0.05 2.50 7.96 -2.39 -0.02 2.48 16 47 H -0.04 -2.53 8.14 -2.38 -0.02 -2.54 16 48 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 49 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 50 H 0.03 1.11 7.93 -2.39 -0.02 1.09 16 51 H 0.12 2.28 7.74 -2.39 -0.02 2.27 16 Total: -1.00 -97.94 416.36 3.41 -94.53 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.88 Total: 10.47 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 6.41 Total: 17.44 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -4.85 Total: -104.85 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -1.07 Total: -65.69 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -97.94 3.41 -94.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269914327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.259 kcal (2) G-P(sol) polarization free energy of solvation -97.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds