Wall clock time and date at job start Tue Mar 31 2020 22:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 O 1.20761 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99979 * 179.97438 * 3 2 1 6 6 N 1.46903 * 109.46848 * 180.02562 * 5 3 2 7 7 C 1.48473 * 110.99941 * 293.95101 * 6 5 3 8 8 C 1.54177 * 111.97887 * 192.46536 * 7 6 5 9 9 O 1.39987 * 113.26839 * 318.70960 * 8 7 6 10 10 C 1.44610 * 112.94239 * 94.38860 * 9 8 7 11 11 C 1.46307 * 111.22585 * 280.78459 * 10 9 8 12 12 C 1.54588 * 112.56503 * 182.42900 * 11 10 9 13 13 C 1.51283 * 104.28798 * 145.15327 * 12 11 10 14 14 O 1.21288 * 124.94374 * 164.15651 * 13 12 11 15 15 N 1.34422 * 110.12286 * 344.27599 * 13 12 11 16 16 C 1.46496 * 124.34909 * 179.40388 * 15 13 12 17 17 C 1.53006 * 109.46995 * 269.69650 * 16 15 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.46757 * 111.30216 * 359.13422 * 15 13 12 27 27 C 1.44084 * 110.99436 * 165.83923 * 6 5 3 28 28 H 1.09005 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47372 * 299.99620 * 1 2 3 30 30 H 1.08998 * 109.47356 * 60.00276 * 1 2 3 31 31 H 1.09000 * 109.47180 * 239.99993 * 2 1 3 32 32 H 1.09009 * 109.47092 * 120.00121 * 2 1 3 33 33 H 1.08998 * 109.46791 * 60.00147 * 5 3 2 34 34 H 1.09000 * 109.47294 * 300.00500 * 5 3 2 35 35 H 1.09001 * 108.97718 * 71.82487 * 7 6 5 36 36 H 1.08997 * 108.98120 * 313.11500 * 7 6 5 37 37 H 1.08995 * 108.72460 * 197.72515 * 8 7 6 38 38 H 1.09001 * 108.62025 * 79.61600 * 8 7 6 39 39 H 1.08992 * 109.12691 * 160.33153 * 10 9 8 40 40 H 1.09001 * 109.07665 * 41.19783 * 10 9 8 41 41 H 1.09005 * 110.47500 * 264.05254 * 12 11 10 42 42 H 1.08994 * 110.48388 * 26.67884 * 12 11 10 43 43 H 1.09001 * 109.47001 * 149.69948 * 16 15 13 44 44 H 1.09001 * 109.47464 * 29.69389 * 16 15 13 45 45 H 1.09001 * 109.47002 * 60.00299 * 17 16 15 46 46 H 1.08993 * 109.46955 * 299.99862 * 17 16 15 47 47 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 48 48 H 1.09001 * 110.24107 * 136.20764 * 26 15 13 49 49 H 1.09000 * 110.24518 * 258.10978 * 26 15 13 50 50 H 1.09001 * 109.72451 * 99.88833 * 27 6 5 51 51 H 1.08996 * 109.73222 * 339.21203 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2475 2.3386 0.0005 5 6 3.5140 1.6961 0.0006 6 7 3.7423 3.1473 0.0011 7 6 3.2695 3.7607 -1.2657 8 6 3.7675 5.2111 -1.4255 9 8 3.7085 5.9500 -0.2380 10 6 4.9549 5.9391 0.4952 11 6 5.1176 4.6933 1.2449 12 6 6.4130 4.6734 2.0883 13 6 6.0363 3.9000 3.3328 14 8 6.8262 3.4255 4.1215 15 7 4.6989 3.8129 3.4360 16 6 3.9969 3.1189 4.5185 17 6 3.7659 1.6590 4.1229 18 6 3.0443 0.9448 5.2366 19 1 2.7768 1.4789 6.1364 20 6 2.7248 -0.3900 5.1064 21 7 3.0500 -1.0402 4.0105 22 14 1.8297 -1.2750 6.4866 23 1 1.6056 -2.6920 6.1027 24 1 0.5220 -0.6153 6.7315 25 1 2.6503 -1.2215 7.7231 26 6 4.0323 4.5077 2.3286 27 6 5.1108 3.4544 0.3307 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9654 1.2572 -0.8892 34 1 3.9647 1.2574 0.8908 35 1 2.1796 3.7569 -1.2762 36 1 3.6326 3.1667 -2.1043 37 1 3.1572 5.7096 -2.1785 38 1 4.8005 5.1882 -1.7724 39 1 4.9677 6.7786 1.1903 40 1 5.7821 6.0441 -0.2068 41 1 7.2121 4.1659 1.5479 42 1 6.7130 5.6878 2.3505 43 1 3.0369 3.6029 4.6979 44 1 4.5991 3.1584 5.4262 45 1 4.7259 1.1749 3.9434 46 1 3.1637 1.6194 3.2153 47 1 3.5145 -0.5806 3.2936 48 1 3.2129 3.9017 1.9418 49 1 3.6597 5.4767 2.6609 50 1 5.6700 3.6667 -0.5805 51 1 5.5622 2.6102 0.8518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273950986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:32 Heat of formation + Delta-G solvation = -102.967783 kcal Electronic energy + Delta-G solvation = -32531.682146 eV Core-core repulsion = 28431.566347 eV Total energy + Delta-G solvation = -4100.115798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14010 -39.49754 -38.68077 -36.34345 -35.80065 -34.53908 -32.85552 -32.62954 -30.25574 -29.58017 -28.23515 -27.30156 -25.97007 -25.40347 -23.91083 -23.27947 -21.61168 -21.20139 -19.82962 -19.21704 -18.92400 -16.94273 -16.82491 -16.45711 -16.32309 -16.19706 -15.58919 -15.49291 -15.16549 -14.91952 -14.64653 -14.32686 -13.88223 -13.72467 -13.43981 -13.39249 -13.19563 -13.07518 -12.82142 -12.73270 -12.42662 -12.24490 -12.09004 -12.04921 -11.79809 -11.59279 -11.49933 -11.22169 -11.00206 -10.95716 -10.88520 -10.81432 -10.68155 -10.30140 -10.07739 -10.04341 -9.82032 -9.33603 -9.29048 -8.65972 -8.32920 -8.24442 -7.94191 -6.38712 -4.06158 2.23497 3.01466 3.37366 3.44403 3.46557 3.63434 3.64714 3.74390 4.24808 4.45167 4.50330 4.54894 4.59256 4.77238 4.83010 4.90948 5.06899 5.15680 5.15785 5.21839 5.32398 5.35884 5.39400 5.40356 5.43506 5.46437 5.50698 5.60916 5.62910 5.69583 5.76511 5.89511 5.97692 6.03457 6.04758 6.07816 6.22783 6.38528 6.39169 6.44239 6.71984 6.83348 6.99133 7.03247 7.15087 7.34879 7.47273 7.80070 7.81654 8.17117 8.43720 8.68161 8.85824 9.64786 11.01974 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.005223 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.703455 B = 5359.232398 C = 7615.650862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.176 4.176 3 C 0.360 3.640 4 O -0.437 6.437 5 C 0.008 3.992 6 N -0.528 5.528 7 C 0.027 3.973 8 C 0.064 3.936 9 O -0.354 6.354 10 C 0.082 3.918 11 C -0.100 4.100 12 C -0.144 4.144 13 C 0.509 3.491 14 O -0.541 6.541 15 N -0.607 5.607 16 C 0.135 3.865 17 C 0.005 3.995 18 C -0.598 4.598 19 H 0.049 0.951 20 C 0.019 3.981 21 N -0.911 5.911 22 Si 1.067 2.933 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.120 3.880 27 C 0.073 3.927 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.265 0.735 48 H 0.111 0.889 49 H 0.060 0.940 50 H 0.045 0.955 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 10.247 -15.531 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.214 4.214 3 C 0.234 3.766 4 O -0.309 6.309 5 C -0.120 4.120 6 N -0.252 5.252 7 C -0.100 4.100 8 C -0.014 4.014 9 O -0.271 6.271 10 C 0.005 3.995 11 C -0.102 4.102 12 C -0.185 4.185 13 C 0.295 3.705 14 O -0.419 6.419 15 N -0.339 5.339 16 C 0.015 3.985 17 C -0.033 4.033 18 C -0.637 4.637 19 H 0.067 0.933 20 C -0.184 4.184 21 N -0.547 5.547 22 Si 0.895 3.105 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.003 4.003 27 C -0.056 4.056 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.129 0.871 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.004 9.288 -14.193 16.992 hybrid contribution 1.485 0.801 -1.122 2.026 sum 2.488 10.089 -15.315 18.507 Atomic orbital electron populations 1.21516 0.93861 1.01605 1.02566 1.22049 0.98395 0.95962 1.05010 1.24504 0.90315 0.91029 0.70732 1.90333 1.58555 1.47435 1.34583 1.22693 0.97011 0.88700 1.03610 1.60146 1.21033 1.09526 1.34524 1.23375 1.03161 0.94796 0.88695 1.22312 1.00188 0.91207 0.87690 1.87873 1.34152 1.69605 1.35452 1.21503 0.86384 0.96283 0.95321 1.21062 0.95768 0.96870 0.96454 1.22398 0.97771 1.02499 0.95846 1.20640 0.82926 0.80123 0.86788 1.90710 1.54193 1.50109 1.46936 1.48598 1.06384 1.52737 1.26231 1.21594 0.95104 0.94330 0.87498 1.19477 0.96257 0.90374 0.97207 1.21932 1.40739 0.97712 1.03272 0.93277 1.25767 0.96688 0.94865 1.01095 1.70805 1.38220 1.39357 1.06343 0.83568 0.76021 0.76144 0.74741 1.20770 1.21436 1.21445 1.22149 0.96125 0.97606 0.84448 1.21828 0.88489 0.97601 0.97638 0.92263 0.91888 0.92883 0.89229 0.87116 0.91832 0.86786 0.88527 0.94529 0.89503 0.93837 0.88681 0.92456 0.88397 0.88146 0.91617 0.91228 0.97347 0.97286 0.92474 0.87061 0.92226 0.93722 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 37.15 0.34 -1.54 16 2 C -0.18 -2.39 6.36 -27.89 -0.18 -2.57 16 3 C 0.36 5.34 6.93 -29.03 -0.20 5.14 16 4 O -0.44 -7.54 13.98 6.00 0.08 -7.46 16 5 C 0.01 0.10 5.30 -4.97 -0.03 0.08 16 6 N -0.53 -6.85 2.04 -235.63 -0.48 -7.33 16 7 C 0.03 0.30 5.37 -2.34 -0.01 0.29 16 8 C 0.06 0.62 6.06 37.77 0.23 0.85 16 9 O -0.35 -4.12 10.34 -32.89 -0.34 -4.46 16 10 C 0.08 0.79 4.90 33.97 0.17 0.96 16 11 C -0.10 -1.18 0.63 -155.57 -0.10 -1.28 16 12 C -0.14 -1.79 5.75 -26.76 -0.15 -1.94 16 13 C 0.51 9.38 7.88 -10.86 -0.09 9.30 16 14 O -0.54 -12.41 17.58 5.55 0.10 -12.32 16 15 N -0.61 -11.28 2.93 -172.41 -0.51 -11.78 16 16 C 0.14 2.97 5.88 -4.04 -0.02 2.95 16 17 C 0.00 0.12 4.61 -27.88 -0.13 -0.01 16 18 C -0.60 -16.98 9.11 -34.44 -0.31 -17.30 16 19 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 20 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 21 N -0.91 -26.71 13.65 55.43 0.76 -25.95 16 22 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.12 1.85 6.08 -3.12 -0.02 1.83 16 27 C 0.07 0.87 4.25 -4.82 -0.02 0.85 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.11 1.76 8.14 -51.92 -0.42 1.33 16 33 H 0.06 0.68 7.99 -51.93 -0.41 0.26 16 34 H 0.11 1.76 7.65 -51.93 -0.40 1.36 16 35 H 0.10 1.28 6.18 -51.93 -0.32 0.96 16 36 H 0.04 0.35 7.93 -51.93 -0.41 -0.06 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.35 6.57 -51.93 -0.34 0.00 16 39 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 40 H 0.06 0.44 7.48 -51.93 -0.39 0.05 16 41 H 0.10 1.09 7.86 -51.93 -0.41 0.68 16 42 H 0.10 1.02 7.95 -51.93 -0.41 0.61 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.07 1.62 7.92 -51.93 -0.41 1.21 16 45 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 46 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 47 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 48 H 0.11 1.99 6.37 -51.93 -0.33 1.66 16 49 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 50 H 0.04 0.44 6.90 -51.93 -0.36 0.08 16 51 H 0.08 1.07 7.01 -51.93 -0.36 0.71 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -34.27 397.26 -8.78 -43.05 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.68 Total: 2.06 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.62 Total: -1.95 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.23 Total: -45.07 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.16 Total: -24.23 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.27 -8.78 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273950986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.918 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds