Wall clock time and date at job start Tue Mar 31 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 O 1.20761 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99979 * 179.97438 * 3 2 1 6 6 N 1.46903 * 109.46848 * 180.02562 * 5 3 2 7 7 C 1.48473 * 110.99941 * 293.95101 * 6 5 3 8 8 C 1.54177 * 111.97887 * 192.46536 * 7 6 5 9 9 O 1.39987 * 113.26839 * 318.70960 * 8 7 6 10 10 C 1.44610 * 112.94239 * 94.38860 * 9 8 7 11 11 C 1.46307 * 111.22585 * 280.78459 * 10 9 8 12 12 C 1.54588 * 112.56503 * 182.42900 * 11 10 9 13 13 C 1.51283 * 104.28798 * 145.15327 * 12 11 10 14 14 O 1.21288 * 124.94374 * 164.15651 * 13 12 11 15 15 N 1.34422 * 110.12286 * 344.27599 * 13 12 11 16 16 C 1.46496 * 124.34909 * 179.40388 * 15 13 12 17 17 C 1.53006 * 109.46995 * 269.69650 * 16 15 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.46757 * 111.30216 * 359.13422 * 15 13 12 27 27 C 1.44084 * 110.99436 * 165.83923 * 6 5 3 28 28 H 1.09005 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47372 * 299.99620 * 1 2 3 30 30 H 1.08998 * 109.47356 * 60.00276 * 1 2 3 31 31 H 1.09000 * 109.47180 * 239.99993 * 2 1 3 32 32 H 1.09009 * 109.47092 * 120.00121 * 2 1 3 33 33 H 1.08998 * 109.46791 * 60.00147 * 5 3 2 34 34 H 1.09000 * 109.47294 * 300.00500 * 5 3 2 35 35 H 1.09001 * 108.97718 * 71.82487 * 7 6 5 36 36 H 1.08997 * 108.98120 * 313.11500 * 7 6 5 37 37 H 1.08995 * 108.72460 * 197.72515 * 8 7 6 38 38 H 1.09001 * 108.62025 * 79.61600 * 8 7 6 39 39 H 1.08992 * 109.12691 * 160.33153 * 10 9 8 40 40 H 1.09001 * 109.07665 * 41.19783 * 10 9 8 41 41 H 1.09005 * 110.47500 * 264.05254 * 12 11 10 42 42 H 1.08994 * 110.48388 * 26.67884 * 12 11 10 43 43 H 1.09001 * 109.47001 * 149.69948 * 16 15 13 44 44 H 1.09001 * 109.47464 * 29.69389 * 16 15 13 45 45 H 1.09001 * 109.47002 * 60.00299 * 17 16 15 46 46 H 1.08993 * 109.46955 * 299.99862 * 17 16 15 47 47 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 48 48 H 1.09001 * 110.24107 * 136.20764 * 26 15 13 49 49 H 1.09000 * 110.24518 * 258.10978 * 26 15 13 50 50 H 1.09001 * 109.72451 * 99.88833 * 27 6 5 51 51 H 1.08996 * 109.73222 * 339.21203 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2475 2.3386 0.0005 5 6 3.5140 1.6961 0.0006 6 7 3.7423 3.1473 0.0011 7 6 3.2695 3.7607 -1.2657 8 6 3.7675 5.2111 -1.4255 9 8 3.7085 5.9500 -0.2380 10 6 4.9549 5.9391 0.4952 11 6 5.1176 4.6933 1.2449 12 6 6.4130 4.6734 2.0883 13 6 6.0363 3.9000 3.3328 14 8 6.8262 3.4255 4.1215 15 7 4.6989 3.8129 3.4360 16 6 3.9969 3.1189 4.5185 17 6 3.7659 1.6590 4.1229 18 6 3.0443 0.9448 5.2366 19 1 2.7768 1.4789 6.1364 20 6 2.7248 -0.3900 5.1064 21 7 3.0500 -1.0402 4.0105 22 14 1.8297 -1.2750 6.4866 23 1 1.6056 -2.6920 6.1027 24 1 0.5220 -0.6153 6.7315 25 1 2.6503 -1.2215 7.7231 26 6 4.0323 4.5077 2.3286 27 6 5.1108 3.4544 0.3307 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9654 1.2572 -0.8892 34 1 3.9647 1.2574 0.8908 35 1 2.1796 3.7569 -1.2762 36 1 3.6326 3.1667 -2.1043 37 1 3.1572 5.7096 -2.1785 38 1 4.8005 5.1882 -1.7724 39 1 4.9677 6.7786 1.1903 40 1 5.7821 6.0441 -0.2068 41 1 7.2121 4.1659 1.5479 42 1 6.7130 5.6878 2.3505 43 1 3.0369 3.6029 4.6979 44 1 4.5991 3.1584 5.4262 45 1 4.7259 1.1749 3.9434 46 1 3.1637 1.6194 3.2153 47 1 3.5145 -0.5806 3.2936 48 1 3.2129 3.9017 1.9418 49 1 3.6597 5.4767 2.6609 50 1 5.6700 3.6667 -0.5805 51 1 5.5622 2.6102 0.8518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273950986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:31 Heat of formation + Delta-G solvation = -125.258210 kcal Electronic energy + Delta-G solvation = -32532.648731 eV Core-core repulsion = 28431.566347 eV Total energy + Delta-G solvation = -4101.082384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27341 -40.75145 -39.81941 -37.55901 -36.99707 -36.30826 -34.59843 -33.80757 -31.64749 -30.84624 -29.48350 -28.30501 -27.25490 -26.63885 -25.62551 -24.33173 -23.56059 -22.09666 -20.89333 -20.39766 -20.35602 -19.03917 -17.91718 -17.56102 -17.46840 -17.27602 -16.85229 -16.68732 -16.28328 -16.19111 -15.70362 -15.65008 -15.53757 -15.15069 -14.85957 -14.77201 -14.47785 -14.38055 -14.16983 -14.08828 -13.80416 -13.56345 -13.43194 -13.19164 -13.12614 -12.75297 -12.71768 -12.64997 -12.41710 -12.17252 -12.10291 -12.08369 -11.99424 -11.92864 -11.73693 -11.52508 -11.02639 -10.75903 -10.57072 -10.54151 -10.43294 -9.62116 -9.13710 -8.70874 -6.40676 1.02854 1.50412 1.56077 1.58810 1.77996 2.11894 2.46928 2.55189 2.92234 3.13919 3.18498 3.35433 3.52825 3.61429 3.79210 3.95499 4.05969 4.10317 4.15457 4.17219 4.23691 4.28667 4.33450 4.35938 4.37337 4.43337 4.54761 4.59834 4.62777 4.65402 4.71385 4.73919 4.77093 4.81449 4.82873 4.92497 5.00991 5.05044 5.09997 5.13101 5.15928 5.23045 5.25810 5.56905 5.87520 5.95808 6.13740 6.17531 6.29703 6.39785 6.53475 6.63350 7.16824 7.39595 8.69693 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.005223 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.703455 B = 5359.232398 C = 7615.650862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.174 4.174 3 C 0.357 3.643 4 O -0.465 6.465 5 C 0.014 3.986 6 N -0.547 5.547 7 C 0.028 3.972 8 C 0.062 3.938 9 O -0.375 6.375 10 C 0.079 3.921 11 C -0.082 4.082 12 C -0.125 4.125 13 C 0.495 3.505 14 O -0.595 6.595 15 N -0.612 5.612 16 C 0.146 3.854 17 C 0.024 3.976 18 C -0.624 4.624 19 H 0.048 0.952 20 C -0.029 4.029 21 N -0.923 5.923 22 Si 1.114 2.886 23 H -0.278 1.278 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.118 3.882 27 C 0.073 3.927 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.073 0.927 44 H 0.052 0.948 45 H -0.027 1.027 46 H -0.005 1.005 47 H 0.255 0.745 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 11.733 -17.546 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.212 4.212 3 C 0.233 3.767 4 O -0.339 6.339 5 C -0.114 4.114 6 N -0.272 5.272 7 C -0.098 4.098 8 C -0.016 4.016 9 O -0.293 6.293 10 C 0.003 3.997 11 C -0.084 4.084 12 C -0.165 4.165 13 C 0.285 3.715 14 O -0.477 6.477 15 N -0.343 5.343 16 C 0.024 3.976 17 C -0.014 4.014 18 C -0.662 4.662 19 H 0.067 0.933 20 C -0.227 4.227 21 N -0.559 5.559 22 Si 0.935 3.065 23 H -0.203 1.203 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.004 4.004 27 C -0.055 4.055 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.091 0.909 44 H 0.070 0.930 45 H -0.009 1.009 46 H 0.014 0.986 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.783 10.811 -16.252 19.601 hybrid contribution 1.212 0.304 -0.506 1.348 sum 2.994 11.115 -16.758 20.331 Atomic orbital electron populations 1.21496 0.93889 1.02309 1.01589 1.22057 0.98401 0.95412 1.05335 1.24896 0.91056 0.91183 0.69572 1.90323 1.59354 1.48234 1.35998 1.22554 0.95681 0.89652 1.03501 1.60044 1.21908 1.09059 1.36175 1.23379 1.01651 0.96480 0.88318 1.22444 1.02036 0.89702 0.87376 1.87868 1.35409 1.69728 1.36300 1.21660 0.87040 0.94882 0.96089 1.21096 0.93577 0.98444 0.95313 1.22386 0.98383 1.03357 0.92362 1.21778 0.82106 0.79608 0.88032 1.90672 1.55306 1.52410 1.49323 1.48645 1.07074 1.52420 1.26148 1.21158 0.95577 0.92637 0.88239 1.19208 0.93666 0.92472 0.96041 1.22319 1.41402 0.98565 1.03948 0.93341 1.27291 0.96789 0.96008 1.02645 1.70905 1.38814 1.39446 1.06756 0.82972 0.75870 0.75293 0.72329 1.20315 1.19475 1.19987 1.22272 0.96695 0.96875 0.84547 1.21854 0.88188 0.96710 0.98761 0.90692 0.94934 0.91711 0.85542 0.89900 0.88617 0.89869 0.91252 0.92523 0.88177 0.91069 0.87297 0.88774 0.86187 0.84605 0.90864 0.92997 1.00918 0.98644 0.93560 0.89839 0.91124 0.90246 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.20 71.98 0.66 -3.12 16 2 C -0.17 -4.86 6.36 29.84 0.19 -4.67 16 3 C 0.36 10.98 6.93 29.10 0.20 11.18 16 4 O -0.47 -16.71 13.98 -1.45 -0.02 -16.73 16 5 C 0.01 0.38 5.30 85.56 0.45 0.84 16 6 N -0.55 -13.79 2.04 -899.39 -1.84 -15.62 16 7 C 0.03 0.58 5.37 86.40 0.46 1.04 16 8 C 0.06 0.97 6.06 72.38 0.44 1.41 16 9 O -0.38 -7.51 10.34 -140.61 -1.45 -8.96 16 10 C 0.08 1.19 4.90 69.92 0.34 1.53 16 11 C -0.08 -1.74 0.63 -52.87 -0.03 -1.77 16 12 C -0.12 -2.73 5.75 30.57 0.18 -2.55 16 13 C 0.50 18.36 7.88 87.90 0.69 19.05 16 14 O -0.60 -28.16 17.58 -3.05 -0.05 -28.21 16 15 N -0.61 -23.37 2.93 -817.96 -2.40 -25.77 16 16 C 0.15 6.79 5.88 86.38 0.51 7.30 16 17 C 0.02 1.32 4.61 29.85 0.14 1.46 16 18 C -0.62 -36.92 9.11 25.60 0.23 -36.69 16 19 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 20 C -0.03 -1.67 5.46 84.65 0.46 -1.20 16 21 N -0.92 -56.06 13.65 21.45 0.29 -55.76 16 22 Si 1.11 51.17 29.90 68.60 2.05 53.22 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 C 0.12 3.61 6.08 86.84 0.53 4.14 16 27 C 0.07 1.59 4.25 87.15 0.37 1.96 16 28 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 33 H 0.10 1.91 7.99 -2.39 -0.02 1.89 16 34 H 0.08 2.79 7.65 -2.39 -0.02 2.77 16 35 H 0.07 1.81 6.18 -2.39 -0.01 1.80 16 36 H 0.06 0.91 7.93 -2.39 -0.02 0.90 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 0.73 6.57 -2.39 -0.02 0.71 16 39 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 40 H 0.09 0.81 7.48 -2.39 -0.02 0.79 16 41 H 0.12 2.21 7.86 -2.38 -0.02 2.19 16 42 H 0.14 2.11 7.95 -2.39 -0.02 2.10 16 43 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.05 2.57 7.92 -2.39 -0.02 2.55 16 45 H -0.03 -1.69 8.01 -2.39 -0.02 -1.70 16 46 H 0.00 -0.27 8.01 -2.39 -0.02 -0.29 16 47 H 0.25 15.61 7.22 -92.71 -0.67 14.94 16 48 H 0.08 3.09 6.37 -2.39 -0.02 3.07 16 49 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 50 H 0.08 1.20 6.90 -2.39 -0.02 1.18 16 51 H 0.05 1.45 7.01 -2.39 -0.02 1.43 16 Total: -1.00 -80.51 397.26 3.41 -77.10 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.01 Total: 20.85 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.83 Total: -0.11 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.94 Total: -97.16 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -1.53 Total: -53.90 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -80.51 3.41 -77.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273950986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.158 kcal (2) G-P(sol) polarization free energy of solvation -80.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds