Wall clock time and date at job start Tue Mar 31 2020 22:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46945 * 2 1 4 4 O 1.45205 * 109.47004 * 120.00309 * 2 1 3 5 5 C 1.34223 * 116.99743 * 150.00405 * 4 2 1 6 6 O 1.20823 * 120.00282 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00006 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47339 * 179.97438 * 7 5 4 9 9 C 1.46816 * 124.36519 * 89.99776 * 8 7 5 10 10 C 1.54587 * 105.49771 * 163.07822 * 9 8 7 11 11 C 1.54123 * 101.65242 * 24.98292 * 10 9 8 12 12 C 1.52546 * 110.08162 * 94.64633 * 11 10 9 13 13 C 1.53148 * 109.31555 * 178.10710 * 12 11 10 14 14 N 1.46848 * 109.45467 * 301.74317 * 13 12 11 15 15 C 1.46901 * 110.99528 * 186.35277 * 14 13 12 16 16 C 1.50703 * 109.47410 * 65.64553 * 15 14 13 17 17 H 1.08001 * 119.99366 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00116 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99715 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99956 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47051 * 59.99975 * 20 18 16 22 22 H 1.48495 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47010 * 300.00243 * 20 18 16 24 24 C 1.46856 * 111.31188 * 62.17582 * 14 13 12 25 25 C 1.52534 * 110.08650 * 216.69374 * 11 10 9 26 26 C 1.34577 * 124.36058 * 269.99655 * 8 7 5 27 27 O 1.21279 * 125.02761 * 0.68388 * 26 8 7 28 28 H 1.08998 * 109.47292 * 300.00046 * 1 2 3 29 29 H 1.09003 * 109.47156 * 59.99816 * 1 2 3 30 30 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46551 * 239.99941 * 2 1 3 32 32 H 1.08993 * 109.47080 * 60.00367 * 3 2 1 33 33 H 1.09004 * 109.46514 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47298 * 299.99647 * 3 2 1 35 35 H 1.09000 * 109.46894 * 59.99229 * 7 5 4 36 36 H 1.09003 * 109.46901 * 299.99456 * 7 5 4 37 37 H 1.09007 * 110.23965 * 44.07418 * 9 8 7 38 38 H 1.08997 * 110.31425 * 282.12769 * 9 8 7 39 39 H 1.09006 * 110.99067 * 266.89012 * 10 9 8 40 40 H 1.08997 * 110.98907 * 143.07838 * 10 9 8 41 41 H 1.08995 * 109.49479 * 298.06222 * 12 11 10 42 42 H 1.09004 * 109.49736 * 58.15429 * 12 11 10 43 43 H 1.08993 * 109.47231 * 61.74041 * 13 12 11 44 44 H 1.09000 * 109.46946 * 181.74710 * 13 12 11 45 45 H 1.09001 * 109.46963 * 185.64486 * 15 14 13 46 46 H 1.09003 * 109.47402 * 305.64047 * 15 14 13 47 47 H 0.96999 * 119.99362 * 179.97438 * 19 18 16 48 48 H 1.09007 * 109.47545 * 177.82831 * 24 14 13 49 49 H 1.08997 * 109.47945 * 57.81035 * 24 14 13 50 50 H 1.09005 * 109.50034 * 301.83676 * 25 11 10 51 51 H 1.08999 * 109.49847 * 61.90309 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6846 1.1856 5 6 3.1937 -1.3170 1.0851 6 8 3.8015 -1.2996 0.0410 7 6 3.7600 -2.0488 2.2745 8 7 5.0452 -2.6506 1.9110 9 6 6.3440 -1.9812 2.0545 10 6 7.4002 -3.1069 1.9723 11 6 6.6472 -4.1820 1.1645 12 6 6.9864 -4.0568 -0.3175 13 6 6.2668 -5.1615 -1.0968 14 7 6.6718 -6.4725 -0.5737 15 6 6.1194 -7.5596 -1.3929 16 6 6.7285 -7.5100 -2.7705 17 1 7.4532 -6.7469 -3.0132 18 6 6.3607 -8.4387 -3.7208 19 7 5.4786 -9.3682 -3.4249 20 14 7.1152 -8.3768 -5.4285 21 1 8.5882 -8.5337 -5.3248 22 1 6.5569 -9.4757 -6.2565 23 1 6.7999 -7.0711 -6.0619 24 6 6.2868 -6.6272 0.8350 25 6 7.0073 -5.5719 1.6793 26 6 5.1875 -3.8885 1.4026 27 8 4.2765 -4.6547 1.1706 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.0670 -2.8314 2.5833 36 1 3.9062 -1.3479 3.0964 37 1 6.4040 -1.4774 3.0193 38 1 6.4920 -1.2653 1.2461 39 1 7.6578 -3.4740 2.9658 40 1 8.2895 -2.7697 1.4397 41 1 6.6623 -3.0828 -0.6838 42 1 8.0631 -4.1575 -0.4541 43 1 5.1892 -5.0425 -0.9845 44 1 6.5319 -5.0935 -2.1519 45 1 6.3501 -8.5181 -0.9280 46 1 5.0382 -7.4437 -1.4693 47 1 5.2195 -10.0214 -4.0936 48 1 6.5663 -7.6224 1.1810 49 1 5.2090 -6.4976 0.9336 50 1 8.0847 -5.7198 1.6046 51 1 6.6985 -5.6656 2.7204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:36 Heat of formation + Delta-G solvation = -115.761354 kcal Electronic energy + Delta-G solvation = -31139.520268 eV Core-core repulsion = 27038.849699 eV Total energy + Delta-G solvation = -4100.670569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34137 -40.48252 -37.56035 -36.87088 -36.39001 -34.08423 -33.44529 -32.32784 -30.40446 -30.20400 -27.93865 -27.64903 -26.93666 -24.79389 -23.09472 -22.72810 -21.92379 -21.32561 -20.70234 -20.08859 -18.47230 -18.19599 -17.03763 -16.53276 -16.27476 -16.16238 -15.72929 -15.28427 -14.81907 -14.47334 -14.29839 -14.05911 -14.04567 -13.90233 -13.52656 -13.36547 -13.26351 -12.97298 -12.70808 -12.61059 -12.56319 -12.35228 -12.11847 -12.04823 -12.00955 -11.79013 -11.56876 -11.43219 -11.24864 -10.99873 -10.89747 -10.70882 -10.67967 -10.54019 -10.47651 -10.05196 -9.95719 -9.53361 -9.36405 -9.02822 -8.93216 -8.31796 -6.97903 -5.91419 -3.92275 2.01246 2.12239 2.72378 2.97007 3.40183 3.43392 3.46610 4.23539 4.38585 4.40953 4.45976 4.51498 4.56284 4.68226 4.74662 4.81385 4.90284 5.00473 5.16093 5.16355 5.19102 5.32628 5.33992 5.38302 5.40711 5.43794 5.46695 5.68082 5.70025 5.73830 5.77361 5.84096 6.01172 6.03658 6.13194 6.24666 6.27240 6.28928 6.33019 6.53195 6.71638 6.80314 6.88945 7.02320 7.47457 7.56375 7.57403 7.92449 8.22385 8.25070 8.38875 8.72213 9.15389 9.71004 11.19560 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.003124 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.695559 B = 8961.931920 C =10392.177454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.168 4.168 4 O -0.356 6.356 5 C 0.438 3.562 6 O -0.491 6.491 7 C 0.138 3.862 8 N -0.615 5.615 9 C 0.106 3.894 10 C -0.124 4.124 11 C -0.085 4.085 12 C -0.093 4.093 13 C 0.062 3.938 14 N -0.534 5.534 15 C 0.195 3.805 16 C -0.504 4.504 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.042 3.958 25 C -0.089 4.089 26 C 0.535 3.465 27 O -0.505 6.505 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.028 0.972 44 H 0.082 0.918 45 H 0.028 0.972 46 H -0.010 1.010 47 H 0.260 0.740 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.078 0.922 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 22.755 15.738 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.225 4.225 4 O -0.273 6.273 5 C 0.279 3.721 6 O -0.376 6.376 7 C 0.014 3.986 8 N -0.351 5.351 9 C -0.017 4.017 10 C -0.162 4.162 11 C -0.088 4.088 12 C -0.131 4.131 13 C -0.067 4.067 14 N -0.259 5.259 15 C 0.070 3.930 16 C -0.543 4.543 17 H 0.080 0.920 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.087 4.087 25 C -0.127 4.127 26 C 0.324 3.676 27 O -0.378 6.378 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.008 0.992 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.097 0.903 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.313 22.189 15.171 27.083 hybrid contribution -0.630 0.206 -1.121 1.302 sum -3.943 22.395 14.050 26.730 Atomic orbital electron populations 1.21891 0.92293 1.03408 1.03068 1.22748 0.95061 0.92572 0.87196 1.22194 1.02058 0.95213 1.03037 1.86542 1.36659 1.62767 1.41358 1.24526 0.79585 0.76880 0.91159 1.90697 1.59273 1.57365 1.30278 1.20714 0.86398 0.98839 0.92693 1.48066 1.05484 1.15899 1.65619 1.22151 0.81691 0.95874 1.01978 1.22713 0.97768 0.94390 1.01323 1.21047 0.91685 0.97387 0.98694 1.21495 1.01956 0.99093 0.90597 1.21938 0.96670 0.88765 0.99293 1.62048 1.60170 1.02933 1.00739 1.19653 0.93015 0.88406 0.91936 1.21152 1.23831 1.13580 0.95747 0.91994 1.24994 0.95338 0.95518 0.98864 1.69964 1.32449 1.16897 1.34615 0.86582 0.79470 0.77428 0.84037 1.20196 1.21429 1.20360 1.22172 0.98733 0.97398 0.90372 1.21413 1.01660 0.91687 0.97965 1.20879 0.91736 0.80363 0.74635 1.90715 1.46426 1.50522 1.50095 0.91409 0.90342 0.91502 0.89631 0.91573 0.92051 0.90667 0.85865 0.86186 0.90418 0.90946 0.89779 0.88786 0.92020 0.90069 0.95402 0.89932 0.95358 0.99212 0.92995 0.91732 0.93296 0.90322 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.57 37.16 0.36 -0.75 16 2 C 0.08 0.77 3.18 -26.73 -0.09 0.68 16 3 C -0.17 -1.30 9.55 37.16 0.35 -0.95 16 4 O -0.36 -3.91 9.88 -39.24 -0.39 -4.30 16 5 C 0.44 5.46 8.00 36.01 0.29 5.74 16 6 O -0.49 -7.84 15.65 -18.75 -0.29 -8.14 16 7 C 0.14 1.36 6.53 -5.20 -0.03 1.33 16 8 N -0.61 -7.38 2.43 -173.84 -0.42 -7.80 16 9 C 0.11 0.93 7.36 -3.04 -0.02 0.90 16 10 C -0.12 -1.16 6.21 -25.31 -0.16 -1.31 16 11 C -0.08 -1.21 0.55 -155.50 -0.09 -1.30 16 12 C -0.09 -1.54 4.77 -26.89 -0.13 -1.67 16 13 C 0.06 1.35 5.08 -3.78 -0.02 1.33 16 14 N -0.53 -12.47 4.63 -235.96 -1.09 -13.57 16 15 C 0.20 5.49 4.72 -4.97 -0.02 5.47 16 16 C -0.50 -14.90 8.42 -34.44 -0.29 -15.19 16 17 H 0.06 1.79 7.11 -52.49 -0.37 1.42 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -28.03 13.29 55.43 0.74 -27.29 16 20 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.04 0.84 5.24 -3.77 -0.02 0.82 16 25 C -0.09 -1.36 4.77 -26.89 -0.13 -1.48 16 26 C 0.54 8.58 6.32 -11.03 -0.07 8.51 16 27 O -0.50 -10.24 13.85 5.56 0.08 -10.17 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.01 7.16 -51.93 -0.37 0.64 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.12 1.21 7.94 -51.93 -0.41 0.80 16 36 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 40 H 0.09 0.75 7.87 -51.93 -0.41 0.35 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.68 6.68 -51.93 -0.35 0.33 16 44 H 0.08 1.94 6.68 -51.93 -0.35 1.59 16 45 H 0.03 0.84 7.98 -51.93 -0.41 0.43 16 46 H -0.01 -0.31 8.13 -51.93 -0.42 -0.73 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 49 H 0.05 1.10 5.78 -51.93 -0.30 0.80 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -36.98 401.67 -9.36 -46.34 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.85 Total: -2.26 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.16 Total: 3.65 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.78 Total: -48.66 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.60 Total: -22.61 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.98 -9.36 -46.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.417 kcal (2) G-P(sol) polarization free energy of solvation -36.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds