Wall clock time and date at job start Tue Mar 31 2020 22:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47184 * 2 1 4 4 O 1.45205 * 109.47418 * 120.00156 * 2 1 3 5 5 C 1.34224 * 117.00245 * 150.00103 * 4 2 1 6 6 O 1.20830 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.46994 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99852 * 180.02562 * 8 7 5 10 10 O 1.21288 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00224 * 179.97438 * 9 8 7 12 12 H 1.09005 * 115.56827 * 325.72094 * 11 9 8 13 13 C 1.53058 * 117.50479 * 111.43827 * 11 9 8 14 14 C 1.52730 * 117.50768 * 179.97438 * 11 9 8 15 15 C 1.53218 * 117.84488 * 144.78398 * 14 11 9 16 16 C 1.53260 * 108.62110 * 162.99665 * 15 14 11 17 17 N 1.46803 * 109.45022 * 55.59618 * 16 15 14 18 18 C 1.46906 * 111.00388 * 170.80287 * 17 16 15 19 19 C 1.50703 * 109.46573 * 65.03661 * 18 17 16 20 20 H 1.08007 * 120.00181 * 354.97203 * 19 18 17 21 21 C 1.37878 * 119.99861 * 174.96443 * 19 18 17 22 22 N 1.31515 * 119.99803 * 0.28037 * 21 19 18 23 23 Si 1.86795 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47422 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46880 * 120.00709 * 23 21 19 26 26 H 1.48504 * 109.47488 * 240.00302 * 23 21 19 27 27 C 1.46808 * 111.56935 * 295.17488 * 17 16 15 28 28 C 1.53215 * 117.84929 * 0.27793 * 14 11 9 29 29 H 1.09003 * 109.46859 * 299.99592 * 1 2 3 30 30 H 1.08996 * 109.47375 * 60.00304 * 1 2 3 31 31 H 1.09006 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47285 * 240.00081 * 2 1 3 33 33 H 1.09003 * 109.47239 * 299.99675 * 3 2 1 34 34 H 1.08999 * 109.47657 * 59.99945 * 3 2 1 35 35 H 1.09006 * 109.47431 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.46954 * 60.00062 * 7 5 4 37 37 H 1.08998 * 109.47081 * 299.99990 * 7 5 4 38 38 H 0.96999 * 120.00226 * 359.97438 * 8 7 5 39 39 H 1.08991 * 117.50708 * 0.02562 * 13 11 9 40 40 H 1.09005 * 117.50121 * 214.94184 * 13 11 9 41 41 H 1.08991 * 109.61305 * 43.25145 * 15 14 11 42 42 H 1.09005 * 109.75519 * 282.81418 * 15 14 11 43 43 H 1.09006 * 109.47614 * 295.60428 * 16 15 14 44 44 H 1.09002 * 109.48379 * 175.59701 * 16 15 14 45 45 H 1.08994 * 109.46920 * 305.04324 * 18 17 16 46 46 H 1.08998 * 109.47048 * 185.03647 * 18 17 16 47 47 H 0.97000 * 120.00246 * 359.72546 * 22 21 19 48 48 H 1.09005 * 109.47262 * 184.81594 * 27 17 16 49 49 H 1.08997 * 109.48027 * 304.83563 * 27 17 16 50 50 H 1.09005 * 109.60856 * 316.74912 * 28 14 11 51 51 H 1.08998 * 109.61014 * 77.08973 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1856 5 6 3.1937 -1.3170 1.0851 6 8 3.8015 -1.2997 0.0410 7 6 3.7601 -2.0487 2.2746 8 7 5.0458 -2.6496 1.9114 9 6 5.7401 -3.3583 2.8237 10 8 5.3006 -3.4982 3.9455 11 6 7.0624 -3.9769 2.4500 12 1 7.1425 -4.3308 1.4221 13 6 8.3221 -3.3977 3.0983 14 6 7.8011 -4.7674 3.5280 15 6 8.5953 -6.0029 3.0917 16 6 9.5726 -6.3771 4.2114 17 7 8.8307 -6.5704 5.4634 18 6 9.6957 -7.1395 6.5055 19 6 10.7786 -6.1511 6.8544 20 1 10.8696 -5.2306 6.2968 21 6 11.6530 -6.4220 7.8854 22 7 11.5455 -7.5453 8.5608 23 14 12.9956 -5.1972 8.3174 24 1 12.9068 -4.0248 7.4103 25 1 12.8235 -4.7494 9.7229 26 1 14.3237 -5.8435 8.1630 27 6 8.2083 -5.3217 5.9202 28 6 7.1452 -4.8814 4.9079 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 3.0671 -2.8314 2.5834 37 1 3.9062 -1.3478 3.0965 38 1 5.3971 -2.5380 1.0142 39 1 8.1943 -2.5696 3.7953 40 1 9.2308 -3.3707 2.4968 41 1 9.1507 -5.7781 2.1812 42 1 7.9134 -6.8335 2.9087 43 1 10.3010 -5.5765 4.3406 44 1 10.0898 -7.3000 3.9492 45 1 10.1489 -8.0604 6.1386 46 1 9.1012 -7.3556 7.3931 47 1 10.8486 -8.1815 8.3362 48 1 7.7405 -5.4831 6.8915 49 1 8.9698 -4.5468 6.0077 50 1 6.7394 -3.9132 5.2012 51 1 6.3430 -5.6185 4.8719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:54 Heat of formation + Delta-G solvation = -103.645010 kcal Electronic energy + Delta-G solvation = -29349.855820 eV Core-core repulsion = 25249.710655 eV Total energy + Delta-G solvation = -4100.145165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25417 -40.38480 -38.42163 -37.46732 -35.85077 -34.76859 -33.73963 -32.78224 -30.33315 -29.92674 -28.75848 -27.87469 -25.40326 -24.25114 -23.05980 -22.64940 -22.51373 -21.13532 -20.92193 -20.37146 -18.50207 -18.19516 -17.43177 -16.97605 -16.68230 -16.52336 -15.74733 -15.41802 -15.00474 -14.71341 -14.42284 -14.35621 -14.21792 -13.90537 -13.71434 -13.68747 -13.26983 -13.04426 -12.87760 -12.82704 -12.70426 -12.54870 -12.32204 -12.06667 -11.70617 -11.68967 -11.51741 -11.41187 -11.20940 -11.00351 -10.91735 -10.62093 -10.56204 -10.32028 -10.15115 -10.12420 -9.64515 -9.62707 -9.46670 -9.26971 -9.04505 -8.33399 -7.02459 -6.33691 -4.07435 1.59317 1.85580 2.37189 2.94884 3.42909 3.46475 3.59420 3.86153 4.00878 4.18817 4.30808 4.53761 4.54097 4.56281 4.77060 4.79443 4.83537 4.91748 4.95655 5.10180 5.12736 5.15558 5.16339 5.18260 5.33316 5.39732 5.45686 5.56376 5.63994 5.78882 5.85034 5.88886 5.97508 5.98857 6.09956 6.18898 6.26545 6.44408 6.54198 6.61911 6.77240 6.81896 7.01640 7.11210 7.16419 7.21227 7.29702 7.96141 8.04215 8.20112 8.29684 8.57447 8.84856 9.66086 11.03081 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.001822 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.230929 B =15361.376761 C =15544.960616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.171 4.171 4 O -0.348 6.348 5 C 0.462 3.538 6 O -0.505 6.505 7 C 0.128 3.872 8 N -0.727 5.727 9 C 0.551 3.449 10 O -0.522 6.522 11 C -0.197 4.197 12 H 0.121 0.879 13 C -0.145 4.145 14 C -0.066 4.066 15 C -0.081 4.081 16 C 0.070 3.930 17 N -0.538 5.538 18 C 0.175 3.825 19 C -0.626 4.626 20 H 0.051 0.949 21 C 0.020 3.980 22 N -0.912 5.912 23 Si 1.070 2.930 24 H -0.291 1.291 25 H -0.287 1.287 26 H -0.287 1.287 27 C 0.068 3.932 28 C -0.075 4.075 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.411 0.589 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.017 0.983 46 H 0.022 0.978 47 H 0.270 0.730 48 H 0.063 0.937 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.916 15.717 -19.967 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.229 4.229 4 O -0.264 6.264 5 C 0.304 3.696 6 O -0.393 6.393 7 C 0.003 3.997 8 N -0.385 5.385 9 C 0.339 3.661 10 O -0.398 6.398 11 C -0.218 4.218 12 H 0.139 0.861 13 C -0.182 4.182 14 C -0.067 4.067 15 C -0.119 4.119 16 C -0.059 4.059 17 N -0.262 5.262 18 C 0.049 3.951 19 C -0.665 4.665 20 H 0.070 0.930 21 C -0.185 4.185 22 N -0.548 5.548 23 Si 0.899 3.101 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.214 1.214 27 C -0.061 4.061 28 C -0.112 4.112 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.248 0.752 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.040 0.960 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.211 15.585 -18.552 30.921 hybrid contribution -0.451 0.525 -1.626 1.767 sum -19.662 16.110 -20.178 32.454 Atomic orbital electron populations 1.21909 0.92019 1.03430 1.03431 1.22829 0.95217 0.92758 0.86593 1.22228 1.02232 0.95023 1.03384 1.86555 1.35877 1.62369 1.41619 1.23577 0.79647 0.76507 0.89852 1.90665 1.59310 1.58680 1.30600 1.20607 0.87212 0.98711 0.93217 1.45807 1.20609 1.55166 1.16903 1.19836 0.85143 0.77004 0.84120 1.90727 1.69498 1.59225 1.20303 1.22263 0.90818 1.08179 1.00585 0.86099 1.23073 0.94457 0.98333 1.02375 1.21599 0.98167 0.92378 0.94561 1.21330 0.97585 0.95296 0.97645 1.21788 0.94052 1.00155 0.89875 1.62202 1.33502 1.25946 1.04575 1.19838 0.90878 0.94848 0.89581 1.22621 1.17143 1.06681 1.20038 0.93030 1.25751 1.00010 0.99333 0.93373 1.70722 1.34200 1.08859 1.40995 0.83530 0.75760 0.74816 0.75981 1.21703 1.21345 1.21364 1.21903 0.95597 0.91725 0.96829 1.21465 0.96860 1.02287 0.90609 0.91147 0.90144 0.91506 0.89507 0.90463 0.91290 0.91877 0.86936 0.86976 0.75160 0.88379 0.87862 0.92218 0.91106 0.94467 0.91775 0.96461 0.95971 0.91939 0.91860 0.94560 0.89986 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.57 37.16 0.36 -0.25 16 2 C 0.08 0.49 3.18 -26.73 -0.09 0.41 16 3 C -0.17 -0.90 9.55 37.16 0.35 -0.54 16 4 O -0.35 -2.70 9.88 -39.24 -0.39 -3.09 16 5 C 0.46 3.92 8.00 36.01 0.29 4.21 16 6 O -0.50 -5.27 14.89 -18.75 -0.28 -5.55 16 7 C 0.13 1.04 6.27 -5.19 -0.03 1.01 16 8 N -0.73 -6.97 5.53 -61.48 -0.34 -7.31 16 9 C 0.55 6.83 7.59 -10.99 -0.08 6.75 16 10 O -0.52 -8.08 13.13 5.55 0.07 -8.01 16 11 C -0.20 -2.35 5.93 -91.88 -0.54 -2.90 16 12 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.14 -1.85 9.62 -26.85 -0.26 -2.11 16 14 C -0.07 -0.99 2.01 -154.57 -0.31 -1.30 16 15 C -0.08 -1.24 5.87 -26.48 -0.16 -1.39 16 16 C 0.07 1.37 5.08 -3.74 -0.02 1.35 16 17 N -0.54 -11.95 4.78 -235.89 -1.13 -13.08 16 18 C 0.17 4.58 4.45 -4.97 -0.02 4.56 16 19 C -0.63 -17.61 7.79 -34.44 -0.27 -17.88 16 20 H 0.05 1.46 5.93 -52.48 -0.31 1.15 16 21 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 22 N -0.91 -27.90 13.65 55.43 0.76 -27.14 16 23 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.07 1.42 4.99 -3.74 -0.02 1.40 16 28 C -0.07 -1.31 4.32 -26.49 -0.11 -1.42 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.59 7.16 -51.93 -0.37 0.22 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.41 3.55 7.44 -40.82 -0.30 3.24 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.79 6.96 -51.93 -0.36 0.43 16 44 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 45 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 46 H 0.02 0.62 7.81 -51.93 -0.41 0.21 16 47 H 0.27 8.24 7.19 -40.82 -0.29 7.95 16 48 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 49 H 0.04 0.82 6.85 -51.93 -0.36 0.46 16 50 H 0.08 1.45 6.00 -51.93 -0.31 1.14 16 51 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -33.16 406.13 -9.96 -43.12 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.68 Total: 2.00 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.01 Total: -7.62 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.71 Total: -47.53 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.59 Total: -16.64 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.16 -9.96 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.527 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds