Wall clock time and date at job start Tue Mar 31 2020 22:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46904 * 2 1 4 4 O 1.45191 * 109.47076 * 120.00190 * 2 1 3 5 5 C 1.34220 * 117.00142 * 90.00187 * 4 2 1 6 6 O 1.20826 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50709 * 120.00274 * 179.97438 * 5 4 2 8 8 N 1.46503 * 109.47095 * 179.97438 * 7 5 4 9 9 C 1.46886 * 124.37201 * 90.02851 * 8 7 5 10 10 C 1.54711 * 105.51853 * 196.54380 * 9 8 7 11 11 C 1.53579 * 101.50890 * 335.50676 * 10 9 8 12 12 C 1.53326 * 111.07162 * 262.64759 * 11 10 9 13 13 C 1.54500 * 104.75774 * 216.60064 * 12 11 10 14 14 C 1.54461 * 105.04280 * 359.25822 * 13 12 11 15 15 N 1.47403 * 111.07798 * 144.99876 * 11 10 9 16 16 C 1.46894 * 111.00049 * 278.33279 * 15 11 10 17 17 C 1.52994 * 109.47313 * 169.99629 * 16 15 11 18 18 C 1.50704 * 109.47318 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99979 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99782 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99449 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47692 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46589 * 120.00381 * 22 20 18 25 25 H 1.48494 * 109.47091 * 239.99660 * 22 20 18 26 26 C 1.34754 * 124.37408 * 269.72285 * 8 7 5 27 27 O 1.21286 * 125.13585 * 359.20563 * 26 8 7 28 28 H 1.09000 * 109.47473 * 299.99752 * 1 2 3 29 29 H 1.09008 * 109.47123 * 59.99873 * 1 2 3 30 30 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46870 * 240.00691 * 2 1 3 32 32 H 1.08997 * 109.47057 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47460 * 300.00075 * 3 2 1 34 34 H 1.09003 * 109.47347 * 59.99941 * 3 2 1 35 35 H 1.09003 * 109.46830 * 60.00084 * 7 5 4 36 36 H 1.09000 * 109.47202 * 299.99990 * 7 5 4 37 37 H 1.09000 * 110.23656 * 315.55471 * 9 8 7 38 38 H 1.08999 * 110.23442 * 77.53099 * 9 8 7 39 39 H 1.08998 * 111.01615 * 93.56284 * 10 9 8 40 40 H 1.09000 * 111.02064 * 217.44529 * 10 9 8 41 41 H 1.08992 * 110.37895 * 335.42272 * 12 11 10 42 42 H 1.09001 * 110.37550 * 97.67169 * 12 11 10 43 43 H 1.08998 * 110.32673 * 118.15245 * 13 12 11 44 44 H 1.08996 * 110.32590 * 240.26482 * 13 12 11 45 45 H 1.09008 * 110.37445 * 142.37630 * 14 13 12 46 46 H 1.09000 * 110.38154 * 264.61638 * 14 13 12 47 47 H 1.09000 * 109.47312 * 289.99720 * 16 15 11 48 48 H 1.09007 * 109.47104 * 49.99464 * 16 15 11 49 49 H 1.09003 * 109.47346 * 299.99875 * 17 16 15 50 50 H 1.09007 * 109.47170 * 59.99875 * 17 16 15 51 51 H 0.97001 * 119.99363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0074 1.0850 6 8 1.9974 -2.5748 0.0412 7 6 2.7193 -2.7852 2.2742 8 7 2.8571 -4.1978 1.9110 9 6 4.0782 -4.7958 1.3553 10 6 3.6369 -6.1480 0.7468 11 6 2.3699 -6.4511 1.5602 12 6 2.6753 -7.4045 2.7215 13 6 1.4296 -8.3128 2.8231 14 6 0.4743 -7.8079 1.7194 15 7 1.3587 -7.1326 0.7320 16 6 0.6034 -6.1670 -0.0773 17 6 -0.2548 -6.9174 -1.0975 18 6 -1.0302 -5.9268 -1.9274 19 1 -0.9213 -4.8678 -1.7456 20 6 -1.8785 -6.3725 -2.9187 21 7 -2.0106 -7.6621 -3.1404 22 14 -2.8400 -5.1446 -3.9468 23 1 -2.5159 -3.7653 -3.5023 24 1 -2.4733 -5.3022 -5.3772 25 1 -4.2949 -5.3902 -3.7789 26 6 1.8820 -5.1175 2.0492 27 8 0.7774 -4.9011 2.5009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 2.0105 -2.6893 3.0967 36 1 3.6884 -2.3926 2.5822 37 1 4.4946 -4.1518 0.5807 38 1 4.8113 -4.9591 2.1452 39 1 3.4052 -6.0427 -0.3131 40 1 4.3958 -6.9143 0.9051 41 1 3.5618 -7.9992 2.5013 42 1 2.8150 -6.8441 3.6459 43 1 1.7030 -9.3521 2.6410 44 1 0.9653 -8.2103 3.8039 45 1 -0.0442 -8.6461 1.2536 46 1 -0.2444 -7.1008 2.1337 47 1 -0.0400 -5.5732 0.5721 48 1 1.2979 -5.5094 -0.6003 49 1 0.3885 -7.5111 -1.7469 50 1 -0.9493 -7.5750 -0.5745 51 1 -2.6072 -7.9755 -3.8381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:21 Heat of formation + Delta-G solvation = -110.749631 kcal Electronic energy + Delta-G solvation = -31758.348786 eV Core-core repulsion = 27657.895541 eV Total energy + Delta-G solvation = -4100.453245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36966 -40.38707 -37.60855 -36.78652 -36.22042 -33.66052 -33.35085 -32.15084 -31.83170 -28.54720 -28.11890 -27.64087 -27.44514 -24.46258 -23.56269 -22.82170 -21.53518 -21.13579 -20.45284 -19.90759 -18.79618 -18.02224 -16.94060 -16.54699 -16.45547 -15.96123 -15.67401 -15.15658 -14.99956 -14.59579 -14.44327 -14.31840 -14.04771 -13.84185 -13.63758 -13.40102 -12.96160 -12.81552 -12.58080 -12.47960 -12.40217 -12.25667 -12.13120 -12.00169 -11.82577 -11.65040 -11.41413 -11.07623 -11.05707 -10.91013 -10.76612 -10.69904 -10.69363 -10.55796 -10.50704 -10.41227 -9.93603 -9.66879 -9.28727 -9.01211 -8.88553 -8.24552 -7.79900 -5.90280 -3.90860 2.16572 2.22547 2.76690 3.02568 3.36703 3.43242 3.49408 4.17865 4.43795 4.54336 4.57576 4.60163 4.63759 4.73475 4.77198 4.87137 4.93298 4.99075 5.04969 5.18298 5.25926 5.28989 5.35635 5.45596 5.46088 5.50500 5.61494 5.65728 5.69270 5.81970 5.85070 5.93446 5.98815 6.06052 6.09253 6.19957 6.24769 6.32822 6.45330 6.46213 6.56652 6.64666 6.96374 7.10934 7.39768 7.45689 7.74755 7.85924 7.99129 8.16391 8.21932 8.55698 9.16147 9.71790 11.21422 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006976 B = 0.005440 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4013.003814 B = 5146.271968 C = 8451.697953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 C -0.147 4.147 4 O -0.358 6.358 5 C 0.433 3.567 6 O -0.479 6.479 7 C 0.138 3.862 8 N -0.612 5.612 9 C 0.105 3.895 10 C -0.113 4.113 11 C 0.058 3.942 12 C -0.098 4.098 13 C -0.122 4.122 14 C 0.031 3.969 15 N -0.475 5.475 16 C 0.042 3.958 17 C 0.035 3.965 18 C -0.513 4.513 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.517 3.483 27 O -0.512 6.512 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.060 0.940 49 H 0.023 0.977 50 H 0.015 0.985 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.953 10.870 13.670 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.026 3.974 3 C -0.204 4.204 4 O -0.276 6.276 5 C 0.272 3.728 6 O -0.364 6.364 7 C 0.013 3.987 8 N -0.348 5.348 9 C -0.017 4.017 10 C -0.151 4.151 11 C -0.036 4.036 12 C -0.137 4.137 13 C -0.160 4.160 14 C -0.097 4.097 15 N -0.198 5.198 16 C -0.084 4.084 17 C -0.002 4.002 18 C -0.552 4.552 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.304 3.696 27 O -0.386 6.386 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.079 0.921 49 H 0.041 0.959 50 H 0.034 0.966 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.386 10.399 13.074 22.711 hybrid contribution -1.100 1.454 -0.438 1.875 sum 14.286 11.852 12.636 22.456 Atomic orbital electron populations 1.22215 0.94095 1.03741 1.02876 1.22729 0.94871 0.92757 0.87020 1.21879 1.01816 0.93575 1.03133 1.86512 1.77313 1.22195 1.41539 1.24468 0.75621 0.81572 0.91152 1.90777 1.45823 1.69541 1.30241 1.20709 1.04276 0.80229 0.93453 1.48157 1.15308 1.06219 1.65146 1.22230 0.86179 0.95323 0.98008 1.22550 0.95845 0.95299 1.01394 1.22131 0.95841 0.90786 0.94892 1.22103 0.99417 0.96355 0.95780 1.22359 0.95337 0.99498 0.98821 1.23201 0.95257 0.99376 0.91862 1.65601 1.12622 1.25003 1.16623 1.22689 0.96108 0.93751 0.95895 1.18983 0.93529 0.95290 0.92419 1.21228 1.24265 0.93125 1.16614 0.92917 1.24959 0.96949 0.95053 0.97292 1.69987 1.38083 1.12810 1.32576 0.86579 0.79819 0.81728 0.80179 1.19852 1.20999 1.21037 1.21576 0.83882 0.87679 0.76454 1.90707 1.19846 1.83452 1.44548 0.91653 0.90667 0.91484 0.89663 0.91839 0.90380 0.91456 0.86083 0.86226 0.90437 0.90729 0.88715 0.88704 0.89920 0.91649 0.90940 0.91611 0.89656 0.92595 0.94206 0.92134 0.95904 0.96644 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.55 37.16 0.35 -1.77 16 2 C 0.08 0.97 3.18 -26.73 -0.09 0.88 16 3 C -0.15 -1.22 9.57 37.16 0.36 -0.86 16 4 O -0.36 -4.57 9.88 -39.23 -0.39 -4.96 16 5 C 0.43 6.23 8.00 36.01 0.29 6.52 16 6 O -0.48 -9.01 15.65 -18.75 -0.29 -9.30 16 7 C 0.14 1.54 6.54 -5.19 -0.03 1.51 16 8 N -0.61 -8.20 2.43 -173.89 -0.42 -8.63 16 9 C 0.11 1.09 7.37 -2.93 -0.02 1.06 16 10 C -0.11 -1.42 6.29 -25.53 -0.16 -1.58 16 11 C 0.06 0.90 0.56 -132.25 -0.07 0.82 16 12 C -0.10 -1.22 6.17 -25.77 -0.16 -1.38 16 13 C -0.12 -1.67 7.01 -25.18 -0.18 -1.85 16 14 C 0.03 0.57 5.57 -2.02 -0.01 0.56 16 15 N -0.48 -9.33 5.02 -217.14 -1.09 -10.42 16 16 C 0.04 1.02 3.73 -3.83 -0.01 1.00 16 17 C 0.04 1.00 5.09 -27.88 -0.14 0.85 16 18 C -0.51 -15.75 9.11 -34.44 -0.31 -16.07 16 19 H 0.05 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -28.12 13.29 55.43 0.74 -27.38 16 22 Si 0.89 23.00 29.54 -169.99 -5.02 17.98 16 23 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.52 8.85 5.48 -11.24 -0.06 8.78 16 27 O -0.51 -10.64 14.79 5.55 0.08 -10.56 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.15 7.16 -51.93 -0.37 0.78 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.12 1.32 7.93 -51.93 -0.41 0.91 16 36 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.43 7.39 -51.93 -0.38 1.05 16 40 H 0.09 0.90 7.45 -51.93 -0.39 0.52 16 41 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 42 H 0.06 0.74 7.85 -51.93 -0.41 0.33 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.62 7.91 -51.92 -0.41 1.21 16 46 H 0.06 1.15 6.80 -51.93 -0.35 0.80 16 47 H 0.04 1.05 5.91 -51.93 -0.31 0.74 16 48 H 0.06 1.51 7.28 -51.93 -0.38 1.13 16 49 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.02 0.45 7.51 -51.93 -0.39 0.06 16 51 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -37.78 404.99 -9.45 -47.23 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.80 Total: -0.23 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.35 Total: 0.16 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.78 Total: -46.43 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.60 Total: -24.82 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.78 -9.45 -47.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.518 kcal (2) G-P(sol) polarization free energy of solvation -37.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds