Wall clock time and date at job start Tue Mar 31 2020 22:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46904 * 2 1 4 4 O 1.45191 * 109.47076 * 120.00190 * 2 1 3 5 5 C 1.34220 * 117.00142 * 90.00187 * 4 2 1 6 6 O 1.20826 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50709 * 120.00274 * 179.97438 * 5 4 2 8 8 N 1.46503 * 109.47095 * 179.97438 * 7 5 4 9 9 C 1.46886 * 124.37201 * 90.02851 * 8 7 5 10 10 C 1.54711 * 105.51853 * 196.54380 * 9 8 7 11 11 C 1.53579 * 101.50890 * 335.50676 * 10 9 8 12 12 C 1.53326 * 111.07162 * 262.64759 * 11 10 9 13 13 C 1.54500 * 104.75774 * 216.60064 * 12 11 10 14 14 C 1.54461 * 105.04280 * 359.25822 * 13 12 11 15 15 N 1.47403 * 111.07798 * 144.99876 * 11 10 9 16 16 C 1.46894 * 111.00049 * 278.33279 * 15 11 10 17 17 C 1.52994 * 109.47313 * 169.99629 * 16 15 11 18 18 C 1.50704 * 109.47318 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99979 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99782 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99449 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47692 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46589 * 120.00381 * 22 20 18 25 25 H 1.48494 * 109.47091 * 239.99660 * 22 20 18 26 26 C 1.34754 * 124.37408 * 269.72285 * 8 7 5 27 27 O 1.21286 * 125.13585 * 359.20563 * 26 8 7 28 28 H 1.09000 * 109.47473 * 299.99752 * 1 2 3 29 29 H 1.09008 * 109.47123 * 59.99873 * 1 2 3 30 30 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46870 * 240.00691 * 2 1 3 32 32 H 1.08997 * 109.47057 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47460 * 300.00075 * 3 2 1 34 34 H 1.09003 * 109.47347 * 59.99941 * 3 2 1 35 35 H 1.09003 * 109.46830 * 60.00084 * 7 5 4 36 36 H 1.09000 * 109.47202 * 299.99990 * 7 5 4 37 37 H 1.09000 * 110.23656 * 315.55471 * 9 8 7 38 38 H 1.08999 * 110.23442 * 77.53099 * 9 8 7 39 39 H 1.08998 * 111.01615 * 93.56284 * 10 9 8 40 40 H 1.09000 * 111.02064 * 217.44529 * 10 9 8 41 41 H 1.08992 * 110.37895 * 335.42272 * 12 11 10 42 42 H 1.09001 * 110.37550 * 97.67169 * 12 11 10 43 43 H 1.08998 * 110.32673 * 118.15245 * 13 12 11 44 44 H 1.08996 * 110.32590 * 240.26482 * 13 12 11 45 45 H 1.09008 * 110.37445 * 142.37630 * 14 13 12 46 46 H 1.09000 * 110.38154 * 264.61638 * 14 13 12 47 47 H 1.09000 * 109.47312 * 289.99720 * 16 15 11 48 48 H 1.09007 * 109.47104 * 49.99464 * 16 15 11 49 49 H 1.09003 * 109.47346 * 299.99875 * 17 16 15 50 50 H 1.09007 * 109.47170 * 59.99875 * 17 16 15 51 51 H 0.97001 * 119.99363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0074 1.0850 6 8 1.9974 -2.5748 0.0412 7 6 2.7193 -2.7852 2.2742 8 7 2.8571 -4.1978 1.9110 9 6 4.0782 -4.7958 1.3553 10 6 3.6369 -6.1480 0.7468 11 6 2.3699 -6.4511 1.5602 12 6 2.6753 -7.4045 2.7215 13 6 1.4296 -8.3128 2.8231 14 6 0.4743 -7.8079 1.7194 15 7 1.3587 -7.1326 0.7320 16 6 0.6034 -6.1670 -0.0773 17 6 -0.2548 -6.9174 -1.0975 18 6 -1.0302 -5.9268 -1.9274 19 1 -0.9213 -4.8678 -1.7456 20 6 -1.8785 -6.3725 -2.9187 21 7 -2.0106 -7.6621 -3.1404 22 14 -2.8400 -5.1446 -3.9468 23 1 -2.5159 -3.7653 -3.5023 24 1 -2.4733 -5.3022 -5.3772 25 1 -4.2949 -5.3902 -3.7789 26 6 1.8820 -5.1175 2.0492 27 8 0.7774 -4.9011 2.5009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 2.0105 -2.6893 3.0967 36 1 3.6884 -2.3926 2.5822 37 1 4.4946 -4.1518 0.5807 38 1 4.8113 -4.9591 2.1452 39 1 3.4052 -6.0427 -0.3131 40 1 4.3958 -6.9143 0.9051 41 1 3.5618 -7.9992 2.5013 42 1 2.8150 -6.8441 3.6459 43 1 1.7030 -9.3521 2.6410 44 1 0.9653 -8.2103 3.8039 45 1 -0.0442 -8.6461 1.2536 46 1 -0.2444 -7.1008 2.1337 47 1 -0.0400 -5.5732 0.5721 48 1 1.2979 -5.5094 -0.6003 49 1 0.3885 -7.5111 -1.7469 50 1 -0.9493 -7.5750 -0.5745 51 1 -2.6072 -7.9755 -3.8381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:20 Heat of formation + Delta-G solvation = -137.325075 kcal Electronic energy + Delta-G solvation = -31759.501183 eV Core-core repulsion = 27657.895541 eV Total energy + Delta-G solvation = -4101.605642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.58406 -41.54701 -38.89402 -38.03509 -37.44527 -35.75611 -34.34644 -33.79705 -33.17068 -30.46735 -29.25647 -28.73139 -28.30472 -26.47600 -24.89700 -23.82726 -23.24432 -22.23938 -21.59392 -21.47897 -20.09235 -19.11474 -18.70413 -18.01321 -17.65176 -17.28280 -17.00598 -16.61382 -16.29284 -16.17155 -15.93939 -15.65035 -15.38386 -14.95733 -14.78364 -14.46249 -14.40248 -14.30562 -14.10216 -13.67031 -13.50963 -13.38988 -13.28647 -13.24191 -13.02654 -12.99018 -12.79424 -12.78179 -12.62667 -12.48624 -12.16961 -12.12335 -12.02155 -11.85915 -11.70797 -11.63702 -11.59269 -11.49603 -11.31019 -11.12782 -10.64389 -9.95905 -9.41521 -8.29372 -6.40942 1.03234 1.11518 1.27927 1.29935 1.43505 1.64640 2.00744 2.31449 2.87358 3.02250 3.36153 3.48553 3.57116 3.59763 3.71256 3.83465 3.86447 4.03488 4.04034 4.04728 4.19134 4.22446 4.29254 4.36463 4.50923 4.54141 4.61245 4.62218 4.64133 4.72568 4.77407 4.78357 4.88197 4.92459 4.97043 5.01665 5.05225 5.11943 5.14196 5.18567 5.26164 5.30138 5.35081 5.43056 5.51800 5.64943 5.84052 5.89349 5.98558 6.19274 6.62499 6.72282 6.98373 7.27193 8.83107 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006976 B = 0.005440 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4013.003814 B = 5146.271968 C = 8451.697953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 C -0.137 4.137 4 O -0.350 6.350 5 C 0.431 3.569 6 O -0.535 6.535 7 C 0.136 3.864 8 N -0.609 5.609 9 C 0.106 3.894 10 C -0.112 4.112 11 C 0.046 3.954 12 C -0.088 4.088 13 C -0.113 4.113 14 C 0.025 3.975 15 N -0.483 5.483 16 C 0.078 3.922 17 C 0.048 3.952 18 C -0.547 4.547 19 H 0.038 0.962 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.963 3.037 23 H -0.274 1.274 24 H -0.266 1.266 25 H -0.269 1.269 26 C 0.504 3.496 27 O -0.564 6.564 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.179 0.821 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.057 0.943 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.023 0.977 47 H 0.009 0.991 48 H 0.044 0.956 49 H -0.001 1.001 50 H -0.010 1.010 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.784 12.174 14.989 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 C -0.194 4.194 4 O -0.267 6.267 5 C 0.273 3.727 6 O -0.423 6.423 7 C 0.013 3.987 8 N -0.343 5.343 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.048 4.048 12 C -0.126 4.126 13 C -0.151 4.151 14 C -0.102 4.102 15 N -0.206 5.206 16 C -0.050 4.050 17 C 0.010 3.990 18 C -0.585 4.585 19 H 0.057 0.943 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.787 3.213 23 H -0.199 1.199 24 H -0.191 1.191 25 H -0.194 1.194 26 C 0.291 3.709 27 O -0.442 6.442 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.142 0.858 36 H 0.196 0.804 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.155 0.845 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.027 0.973 48 H 0.063 0.937 49 H 0.018 0.982 50 H 0.008 0.992 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.278 11.722 14.408 26.059 hybrid contribution -2.001 1.065 -0.868 2.427 sum 16.277 12.787 13.540 24.734 Atomic orbital electron populations 1.22225 0.94789 1.01181 1.04569 1.22942 0.94489 0.94762 0.86000 1.21864 1.02430 0.90568 1.04503 1.86523 1.76814 1.21545 1.41805 1.25247 0.74213 0.81921 0.91320 1.90770 1.48409 1.70512 1.32627 1.21141 1.07243 0.78716 0.91641 1.48292 1.15428 1.06763 1.63812 1.22565 0.85528 0.93655 0.99796 1.22645 0.95307 0.98168 0.98867 1.22472 0.95307 0.90889 0.96125 1.22202 0.99796 0.95607 0.95027 1.22349 0.94787 1.00830 0.97127 1.23208 0.96018 0.97882 0.93141 1.65485 1.12704 1.24314 1.18073 1.22015 0.94885 0.93308 0.94823 1.18760 0.93028 0.94560 0.92613 1.21466 1.26024 0.92784 1.18258 0.94341 1.25886 0.97554 0.97339 0.98203 1.70092 1.38473 1.14710 1.33119 0.85440 0.78538 0.78642 0.78689 1.19881 1.19086 1.19449 1.21872 0.83693 0.89148 0.76138 1.90674 1.21991 1.84427 1.47099 0.90033 0.88960 0.96009 0.91890 0.90803 0.88768 0.90283 0.85793 0.80380 0.89766 0.85289 0.92396 0.84507 0.86174 0.89689 0.88775 0.90360 0.91560 0.95836 0.97287 0.93726 0.98213 0.99168 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 9.55 71.98 0.69 -3.69 16 2 C 0.07 1.75 3.18 30.60 0.10 1.85 16 3 C -0.14 -2.00 9.57 71.98 0.69 -1.31 16 4 O -0.35 -8.84 9.88 -51.32 -0.51 -9.35 16 5 C 0.43 12.59 8.00 71.24 0.57 13.16 16 6 O -0.53 -21.35 15.65 21.96 0.34 -21.01 16 7 C 0.14 2.81 6.54 85.64 0.56 3.37 16 8 N -0.61 -15.47 2.43 -822.48 -2.00 -17.47 16 9 C 0.11 1.83 7.37 86.89 0.64 2.47 16 10 C -0.11 -2.60 6.29 31.37 0.20 -2.40 16 11 C 0.05 1.39 0.56 2.83 0.00 1.40 16 12 C -0.09 -1.90 6.17 31.21 0.19 -1.71 16 13 C -0.11 -2.93 7.01 31.60 0.22 -2.71 16 14 C 0.03 1.00 5.57 86.44 0.48 1.48 16 15 N -0.48 -19.94 5.02 -840.90 -4.22 -24.17 16 16 C 0.08 4.08 3.73 86.30 0.32 4.40 16 17 C 0.05 2.93 5.09 29.85 0.15 3.09 16 18 C -0.55 -35.76 9.11 25.60 0.23 -35.52 16 19 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 20 C 0.01 0.55 5.46 84.66 0.46 1.01 16 21 N -0.92 -59.88 13.29 21.45 0.28 -59.60 16 22 Si 0.96 48.51 29.54 68.60 2.03 50.53 16 23 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 26 C 0.50 17.46 5.48 87.50 0.48 17.94 16 27 O -0.56 -24.82 14.79 -3.05 -0.05 -24.86 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.80 7.16 -2.39 -0.02 1.78 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.12 2.57 7.93 -2.39 -0.02 2.55 16 36 H 0.18 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.79 7.39 -2.39 -0.02 1.77 16 40 H 0.14 1.99 7.45 -2.39 -0.02 1.97 16 41 H 0.12 1.74 7.45 -2.39 -0.02 1.72 16 42 H 0.08 1.56 7.85 -2.39 -0.02 1.55 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 2.75 7.91 -2.38 -0.02 2.73 16 46 H 0.02 1.05 6.80 -2.39 -0.02 1.04 16 47 H 0.01 0.52 5.91 -2.39 -0.01 0.51 16 48 H 0.04 2.43 7.28 -2.38 -0.02 2.41 16 49 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H -0.01 -0.65 7.51 -2.38 -0.02 -0.67 16 51 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -92.82 404.99 2.77 -90.05 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.90 Total: 13.07 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.99 Total: 2.79 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -5.94 Total: -101.24 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.21 Total: -55.21 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Total: -92.82 2.77 -90.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.275 kcal (2) G-P(sol) polarization free energy of solvation -92.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds