Wall clock time and date at job start Tue Mar 31 2020 22:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47446 * 2 1 4 4 O 1.45198 * 109.47151 * 120.00279 * 2 1 3 5 5 C 1.34228 * 117.00475 * 149.99604 * 4 2 1 6 6 O 1.20823 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00392 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.47271 * 180.02562 * 7 5 4 9 9 C 1.46945 * 124.35190 * 269.95101 * 8 7 5 10 10 C 1.54708 * 105.48633 * 196.78736 * 9 8 7 11 11 C 1.53614 * 101.54971 * 335.52275 * 10 9 8 12 12 C 1.53601 * 110.86148 * 263.08204 * 11 10 9 13 13 C 1.55163 * 102.66338 * 217.69737 * 12 11 10 14 14 N 1.48624 * 103.35822 * 36.58221 * 13 12 11 15 15 C 1.46904 * 110.99792 * 200.85679 * 14 13 12 16 16 C 1.53001 * 109.47087 * 287.44857 * 15 14 13 17 17 C 1.50698 * 109.47167 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00214 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47113 * 89.99867 * 21 19 17 23 23 H 1.48497 * 109.47532 * 209.99976 * 21 19 17 24 24 H 1.48503 * 109.47086 * 330.00261 * 21 19 17 25 25 C 1.48181 * 105.86424 * 321.39512 * 14 13 12 26 26 C 1.34748 * 124.37162 * 89.97504 * 8 7 5 27 27 O 1.21282 * 125.13374 * 358.96964 * 26 8 7 28 28 H 1.08997 * 109.46445 * 300.00051 * 1 2 3 29 29 H 1.08993 * 109.47178 * 60.00045 * 1 2 3 30 30 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46615 * 239.99395 * 2 1 3 32 32 H 1.09006 * 109.46796 * 299.99755 * 3 2 1 33 33 H 1.08998 * 109.46945 * 60.00130 * 3 2 1 34 34 H 1.08999 * 109.47184 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47038 * 59.99896 * 7 5 4 36 36 H 1.09002 * 109.46777 * 300.00508 * 7 5 4 37 37 H 1.09002 * 110.22667 * 77.80212 * 9 8 7 38 38 H 1.08995 * 110.27803 * 315.79950 * 9 8 7 39 39 H 1.09002 * 111.01827 * 217.44335 * 10 9 8 40 40 H 1.09000 * 111.01565 * 93.60017 * 10 9 8 41 41 H 1.09004 * 110.77774 * 335.99005 * 12 11 10 42 42 H 1.09007 * 110.77395 * 99.40580 * 12 11 10 43 43 H 1.09001 * 110.63892 * 278.11256 * 13 12 11 44 44 H 1.09004 * 110.78639 * 155.11604 * 13 12 11 45 45 H 1.08997 * 109.47497 * 47.45180 * 15 14 13 46 46 H 1.09003 * 109.46806 * 167.45108 * 15 14 13 47 47 H 1.09004 * 109.47015 * 300.00151 * 16 15 14 48 48 H 1.09003 * 109.47092 * 60.00426 * 16 15 14 49 49 H 0.97000 * 119.99923 * 179.97438 * 20 19 17 50 50 H 1.09003 * 110.02637 * 265.80136 * 25 14 13 51 51 H 1.09005 * 110.02279 * 144.40672 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3171 1.0851 6 8 3.8019 -1.2991 0.0413 7 6 3.7599 -2.0489 2.2746 8 7 5.0457 -2.6499 1.9115 9 6 5.2019 -4.0017 1.3569 10 6 6.6976 -4.3526 1.5389 11 6 7.3362 -2.9566 1.5963 12 6 7.8874 -2.5503 0.2214 13 6 9.1942 -1.7981 0.5875 14 7 9.7145 -2.5607 1.7523 15 6 10.6502 -1.7462 2.5392 16 6 11.9641 -1.5931 1.7703 17 6 12.9243 -0.7582 2.5778 18 1 12.6269 -0.3747 3.5427 19 6 14.1820 -0.4829 2.0844 20 7 14.5439 -0.9495 0.9092 21 14 15.3718 0.5526 3.0850 22 1 16.1807 -0.3314 3.9621 23 1 16.2716 1.2977 2.1682 24 1 14.6091 1.5148 3.9203 25 6 8.5268 -2.9314 2.5570 26 6 6.2373 -2.0348 2.0433 27 8 6.3983 -0.9070 2.4593 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 3.0669 -2.8315 2.5834 36 1 3.9061 -1.3480 3.0965 37 1 4.9393 -4.0077 0.2990 38 1 4.5794 -4.7091 1.9047 39 1 7.0728 -4.9194 0.6868 40 1 6.8612 -4.8959 2.4696 41 1 8.1046 -3.4306 -0.3837 42 1 7.1915 -1.8880 -0.2938 43 1 8.9783 -0.7673 0.8684 44 1 9.9032 -1.8292 -0.2399 45 1 10.2158 -0.7623 2.7158 46 1 10.8429 -2.2351 3.4942 47 1 12.3986 -2.5771 1.5938 48 1 11.7715 -1.1043 0.8153 49 1 15.4286 -0.7555 0.5620 50 1 8.3596 -2.1906 3.3389 51 1 8.6693 -3.9169 3.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:32 Heat of formation + Delta-G solvation = -115.397263 kcal Electronic energy + Delta-G solvation = -30178.379462 eV Core-core repulsion = 26077.724681 eV Total energy + Delta-G solvation = -4100.654781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45440 -40.61569 -37.94122 -37.14433 -36.45158 -34.06417 -33.55890 -32.62739 -30.75508 -28.91546 -28.26636 -27.87241 -27.72980 -24.69966 -23.34564 -23.05009 -21.73220 -21.41184 -20.70433 -19.88664 -19.04061 -18.32856 -17.14733 -16.71264 -16.50411 -16.26783 -15.83502 -15.49881 -15.00361 -14.74059 -14.56657 -14.36732 -14.11110 -13.94528 -13.67864 -13.66682 -13.40899 -12.87938 -12.75761 -12.74061 -12.57686 -12.49988 -12.32546 -12.20307 -12.11906 -11.87540 -11.43069 -11.35650 -11.23216 -11.04487 -10.98773 -10.93068 -10.83847 -10.77337 -10.60766 -10.45501 -9.76212 -9.73879 -9.30587 -9.12467 -9.05439 -8.27274 -7.78750 -5.93185 -3.95053 1.86301 1.96370 2.47872 2.80903 3.36727 3.42460 3.46547 4.02879 4.22126 4.27882 4.34531 4.46060 4.46755 4.49524 4.60085 4.64443 4.69228 4.81136 4.93898 4.97474 5.08751 5.12439 5.21412 5.25280 5.32650 5.35362 5.42623 5.53287 5.56899 5.66780 5.67435 5.73553 5.75124 5.90593 5.94659 6.06427 6.12422 6.16804 6.20204 6.35334 6.48255 6.56961 6.73581 7.04214 7.42073 7.43929 7.53033 7.83277 7.96621 7.98050 8.14915 8.50934 9.12171 9.68067 11.18217 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.002213 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.383510 B =12647.692574 C =13464.718160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.172 4.172 4 O -0.355 6.355 5 C 0.440 3.560 6 O -0.494 6.494 7 C 0.137 3.863 8 N -0.613 5.613 9 C 0.104 3.896 10 C -0.116 4.116 11 C -0.102 4.102 12 C -0.098 4.098 13 C 0.040 3.960 14 N -0.511 5.511 15 C 0.053 3.947 16 C 0.031 3.969 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.056 3.944 26 C 0.539 3.461 27 O -0.512 6.512 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.025 0.975 46 H 0.060 0.940 47 H 0.024 0.976 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.050 0.950 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.352 -6.450 -0.956 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 C -0.229 4.229 4 O -0.272 6.272 5 C 0.280 3.720 6 O -0.380 6.380 7 C 0.013 3.987 8 N -0.348 5.348 9 C -0.019 4.019 10 C -0.153 4.153 11 C -0.106 4.106 12 C -0.136 4.136 13 C -0.088 4.088 14 N -0.235 5.235 15 C -0.074 4.074 16 C -0.006 4.006 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.073 4.073 26 C 0.327 3.673 27 O -0.386 6.386 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -30.713 -6.228 -1.330 31.367 hybrid contribution 0.176 1.459 0.573 1.577 sum -30.538 -4.770 -0.757 30.917 Atomic orbital electron populations 1.21890 0.92264 1.03124 1.03293 1.22750 0.94912 0.92844 0.86880 1.22217 1.02460 0.95061 1.03144 1.86547 1.36502 1.62681 1.41509 1.24503 0.79428 0.77062 0.90965 1.90682 1.58776 1.57928 1.30574 1.20745 0.85610 0.99024 0.93341 1.48086 1.04775 1.16895 1.65058 1.22261 0.98172 0.82003 0.99425 1.22693 0.92618 0.95524 1.04515 1.21523 0.94784 0.95077 0.99217 1.22390 0.96874 1.01165 0.93173 1.23264 0.94571 0.95671 0.95319 1.65042 1.10924 1.40191 1.07386 1.22526 0.94640 0.93432 0.96768 1.19029 0.89186 0.97305 0.95120 1.21213 0.98488 1.32138 1.04070 0.92831 1.24994 0.98200 0.96144 0.95049 1.69979 1.20005 1.45608 1.17691 0.86597 0.81012 0.80438 0.79965 1.20677 1.21265 1.19951 1.22727 0.88106 1.01672 0.94806 1.20612 0.84052 0.86700 0.75929 1.90740 1.84592 1.18108 1.45161 0.91293 0.90302 0.91709 0.89778 0.90618 0.91418 0.91806 0.85928 0.85785 0.90743 0.90082 0.88371 0.89416 0.89488 0.91136 0.93582 0.89346 0.95679 0.92180 0.95723 0.96602 0.93077 0.93207 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.57 37.16 0.36 -0.43 16 2 C 0.08 0.66 3.18 -26.73 -0.09 0.58 16 3 C -0.17 -1.39 9.55 37.16 0.35 -1.03 16 4 O -0.36 -3.37 9.88 -39.25 -0.39 -3.75 16 5 C 0.44 4.74 8.00 36.01 0.29 5.03 16 6 O -0.49 -6.93 15.65 -18.75 -0.29 -7.22 16 7 C 0.14 1.15 6.53 -5.19 -0.03 1.12 16 8 N -0.61 -6.48 2.43 -173.84 -0.42 -6.90 16 9 C 0.10 0.78 7.37 -2.90 -0.02 0.76 16 10 C -0.12 -1.00 6.19 -25.51 -0.16 -1.15 16 11 C -0.10 -1.35 0.77 -155.25 -0.12 -1.47 16 12 C -0.10 -1.39 6.22 -25.27 -0.16 -1.54 16 13 C 0.04 0.72 5.92 -1.72 -0.01 0.71 16 14 N -0.51 -9.81 5.26 -230.61 -1.21 -11.03 16 15 C 0.05 1.21 4.65 -3.82 -0.02 1.19 16 16 C 0.03 0.84 5.06 -27.88 -0.14 0.70 16 17 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 21 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.06 0.87 5.99 -3.12 -0.02 0.86 16 26 C 0.54 7.84 6.60 -11.22 -0.07 7.76 16 27 O -0.51 -9.57 17.15 5.56 0.10 -9.48 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.77 7.16 -51.93 -0.37 0.40 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.12 1.04 7.95 -51.93 -0.41 0.63 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.74 7.45 -51.93 -0.39 0.35 16 40 H 0.09 0.65 7.59 -51.93 -0.39 0.25 16 41 H 0.09 1.07 7.46 -51.93 -0.39 0.68 16 42 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 43 H 0.05 0.92 7.80 -51.93 -0.41 0.52 16 44 H 0.09 1.66 7.82 -51.93 -0.41 1.25 16 45 H 0.02 0.59 7.83 -51.93 -0.41 0.18 16 46 H 0.06 1.32 8.08 -51.93 -0.42 0.91 16 47 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.02 0.45 7.38 -51.93 -0.38 0.07 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.05 0.87 7.07 -51.93 -0.37 0.50 16 51 H 0.08 1.14 7.40 -51.93 -0.38 0.75 16 LS Contribution 411.00 15.07 6.19 6.19 Total: -1.00 -36.69 411.00 -9.46 -46.15 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -8.90 Total: -3.53 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.25 Total: -0.92 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.90 Total: -44.73 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.59 Total: -20.46 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.69 -9.46 -46.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.247 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds