Wall clock time and date at job start Tue Mar 31 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47446 * 2 1 4 4 O 1.45198 * 109.47151 * 120.00279 * 2 1 3 5 5 C 1.34228 * 117.00475 * 149.99604 * 4 2 1 6 6 O 1.20823 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00392 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.47271 * 180.02562 * 7 5 4 9 9 C 1.46945 * 124.35190 * 269.95101 * 8 7 5 10 10 C 1.54708 * 105.48633 * 196.78736 * 9 8 7 11 11 C 1.53614 * 101.54971 * 335.52275 * 10 9 8 12 12 C 1.53601 * 110.86148 * 263.08204 * 11 10 9 13 13 C 1.55163 * 102.66338 * 217.69737 * 12 11 10 14 14 N 1.48624 * 103.35822 * 36.58221 * 13 12 11 15 15 C 1.46904 * 110.99792 * 200.85679 * 14 13 12 16 16 C 1.53001 * 109.47087 * 287.44857 * 15 14 13 17 17 C 1.50698 * 109.47167 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00214 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47113 * 89.99867 * 21 19 17 23 23 H 1.48497 * 109.47532 * 209.99976 * 21 19 17 24 24 H 1.48503 * 109.47086 * 330.00261 * 21 19 17 25 25 C 1.48181 * 105.86424 * 321.39512 * 14 13 12 26 26 C 1.34748 * 124.37162 * 89.97504 * 8 7 5 27 27 O 1.21282 * 125.13374 * 358.96964 * 26 8 7 28 28 H 1.08997 * 109.46445 * 300.00051 * 1 2 3 29 29 H 1.08993 * 109.47178 * 60.00045 * 1 2 3 30 30 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46615 * 239.99395 * 2 1 3 32 32 H 1.09006 * 109.46796 * 299.99755 * 3 2 1 33 33 H 1.08998 * 109.46945 * 60.00130 * 3 2 1 34 34 H 1.08999 * 109.47184 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47038 * 59.99896 * 7 5 4 36 36 H 1.09002 * 109.46777 * 300.00508 * 7 5 4 37 37 H 1.09002 * 110.22667 * 77.80212 * 9 8 7 38 38 H 1.08995 * 110.27803 * 315.79950 * 9 8 7 39 39 H 1.09002 * 111.01827 * 217.44335 * 10 9 8 40 40 H 1.09000 * 111.01565 * 93.60017 * 10 9 8 41 41 H 1.09004 * 110.77774 * 335.99005 * 12 11 10 42 42 H 1.09007 * 110.77395 * 99.40580 * 12 11 10 43 43 H 1.09001 * 110.63892 * 278.11256 * 13 12 11 44 44 H 1.09004 * 110.78639 * 155.11604 * 13 12 11 45 45 H 1.08997 * 109.47497 * 47.45180 * 15 14 13 46 46 H 1.09003 * 109.46806 * 167.45108 * 15 14 13 47 47 H 1.09004 * 109.47015 * 300.00151 * 16 15 14 48 48 H 1.09003 * 109.47092 * 60.00426 * 16 15 14 49 49 H 0.97000 * 119.99923 * 179.97438 * 20 19 17 50 50 H 1.09003 * 110.02637 * 265.80136 * 25 14 13 51 51 H 1.09005 * 110.02279 * 144.40672 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3171 1.0851 6 8 3.8019 -1.2991 0.0413 7 6 3.7599 -2.0489 2.2746 8 7 5.0457 -2.6499 1.9115 9 6 5.2019 -4.0017 1.3569 10 6 6.6976 -4.3526 1.5389 11 6 7.3362 -2.9566 1.5963 12 6 7.8874 -2.5503 0.2214 13 6 9.1942 -1.7981 0.5875 14 7 9.7145 -2.5607 1.7523 15 6 10.6502 -1.7462 2.5392 16 6 11.9641 -1.5931 1.7703 17 6 12.9243 -0.7582 2.5778 18 1 12.6269 -0.3747 3.5427 19 6 14.1820 -0.4829 2.0844 20 7 14.5439 -0.9495 0.9092 21 14 15.3718 0.5526 3.0850 22 1 16.1807 -0.3314 3.9621 23 1 16.2716 1.2977 2.1682 24 1 14.6091 1.5148 3.9203 25 6 8.5268 -2.9314 2.5570 26 6 6.2373 -2.0348 2.0433 27 8 6.3983 -0.9070 2.4593 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.6768 1.9563 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 3.0669 -2.8315 2.5834 36 1 3.9061 -1.3480 3.0965 37 1 4.9393 -4.0077 0.2990 38 1 4.5794 -4.7091 1.9047 39 1 7.0728 -4.9194 0.6868 40 1 6.8612 -4.8959 2.4696 41 1 8.1046 -3.4306 -0.3837 42 1 7.1915 -1.8880 -0.2938 43 1 8.9783 -0.7673 0.8684 44 1 9.9032 -1.8292 -0.2399 45 1 10.2158 -0.7623 2.7158 46 1 10.8429 -2.2351 3.4942 47 1 12.3986 -2.5771 1.5938 48 1 11.7715 -1.1043 0.8153 49 1 15.4286 -0.7555 0.5620 50 1 8.3596 -2.1906 3.3389 51 1 8.6693 -3.9169 3.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:31 Heat of formation + Delta-G solvation = -140.099680 kcal Electronic energy + Delta-G solvation = -30179.450640 eV Core-core repulsion = 26077.724681 eV Total energy + Delta-G solvation = -4101.725958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.42741 -41.49684 -39.23837 -38.06658 -37.48274 -35.73193 -34.48399 -34.08011 -32.19089 -30.47436 -29.47888 -28.78297 -28.27387 -26.54060 -24.52016 -23.79813 -23.45767 -22.23968 -21.69676 -21.48334 -20.08090 -19.11645 -18.59039 -18.03786 -17.53365 -17.34571 -16.84426 -16.71058 -16.40416 -16.14433 -15.84967 -15.49481 -15.33371 -14.95223 -14.72590 -14.70198 -14.34333 -14.27985 -14.04266 -13.79512 -13.45910 -13.41479 -13.25866 -13.19034 -13.09615 -12.99895 -12.88730 -12.77090 -12.68923 -12.46428 -12.41125 -12.08758 -11.99179 -11.87568 -11.76831 -11.64332 -11.55250 -11.36768 -11.22965 -10.86627 -10.56712 -9.96540 -9.42358 -8.21731 -6.33356 1.03639 1.12611 1.37671 1.40073 1.51012 1.53339 2.02482 2.38754 2.98133 3.10884 3.27455 3.34775 3.49498 3.58644 3.74050 3.84815 3.87163 3.93123 4.07383 4.08949 4.22566 4.23810 4.30372 4.43507 4.44761 4.48970 4.57912 4.65626 4.66392 4.68471 4.75999 4.78415 4.80602 4.85709 4.89996 4.99405 5.03473 5.05300 5.12131 5.16826 5.18072 5.36463 5.41602 5.43568 5.58278 5.73967 5.83930 5.94219 6.06147 6.26816 6.61054 6.82364 6.95576 7.35200 8.90386 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.002213 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.383510 B =12647.692574 C =13464.718160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 C -0.170 4.170 4 O -0.353 6.353 5 C 0.439 3.561 6 O -0.534 6.534 7 C 0.133 3.867 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.106 4.106 11 C -0.103 4.103 12 C -0.084 4.084 13 C 0.036 3.964 14 N -0.515 5.515 15 C 0.071 3.929 16 C 0.042 3.958 17 C -0.548 4.548 18 H 0.056 0.944 19 C 0.001 3.999 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.268 1.268 25 C 0.056 3.944 26 C 0.528 3.472 27 O -0.570 6.570 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.176 0.824 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.074 0.926 45 H 0.007 0.993 46 H 0.067 0.933 47 H 0.001 0.999 48 H -0.012 1.012 49 H 0.265 0.735 50 H 0.028 0.972 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.594 -8.404 0.054 34.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.018 3.982 3 C -0.227 4.227 4 O -0.270 6.270 5 C 0.282 3.718 6 O -0.423 6.423 7 C 0.010 3.990 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.143 4.143 11 C -0.107 4.107 12 C -0.122 4.122 13 C -0.093 4.093 14 N -0.239 5.239 15 C -0.057 4.057 16 C 0.004 3.996 17 C -0.586 4.586 18 H 0.074 0.926 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.072 4.072 26 C 0.316 3.684 27 O -0.448 6.448 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.194 0.806 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.092 0.908 45 H 0.026 0.974 46 H 0.086 0.914 47 H 0.019 0.981 48 H 0.006 0.994 49 H 0.073 0.927 50 H 0.046 0.954 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -33.020 -8.230 -0.320 34.032 hybrid contribution 0.804 2.090 0.199 2.248 sum -32.216 -6.141 -0.121 32.796 Atomic orbital electron populations 1.21887 0.89562 1.03945 1.04406 1.22978 0.96911 0.92281 0.86000 1.22226 1.00295 0.95713 1.04499 1.86552 1.35930 1.62401 1.42084 1.25003 0.79269 0.76523 0.91021 1.90670 1.59789 1.59533 1.32312 1.21128 0.85414 1.00492 0.91988 1.48191 1.04368 1.17715 1.63495 1.22567 0.98205 0.80901 1.00241 1.22776 0.92611 0.92396 1.06561 1.21523 0.93807 0.98224 0.97140 1.22317 0.94136 1.01358 0.94430 1.23236 0.96581 0.94780 0.94664 1.64972 1.12389 1.38855 1.07681 1.22148 0.93460 0.93364 0.96727 1.18831 0.91188 0.95252 0.94297 1.21607 0.99538 1.32942 1.04553 0.92578 1.25979 1.00169 0.97306 0.96237 1.70110 1.20766 1.46650 1.19342 0.85405 0.78312 0.78670 0.78387 1.19264 1.20481 1.19198 1.22835 0.87658 1.02185 0.94521 1.20897 0.85802 0.86122 0.75532 1.90704 1.85667 1.20505 1.47963 0.90748 0.88595 0.91034 0.91078 0.88678 0.90706 0.95068 0.80641 0.86005 0.90542 0.85569 0.86537 0.87236 0.86729 0.91901 0.96671 0.90804 0.97425 0.91434 0.98109 0.99382 0.92660 0.95369 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 71.98 0.69 -0.52 16 2 C 0.07 1.15 3.18 30.59 0.10 1.24 16 3 C -0.17 -2.78 9.55 71.98 0.69 -2.09 16 4 O -0.35 -6.37 9.88 -51.39 -0.51 -6.88 16 5 C 0.44 9.16 8.00 71.24 0.57 9.73 16 6 O -0.53 -15.17 15.65 21.97 0.34 -14.83 16 7 C 0.13 1.95 6.53 85.63 0.56 2.51 16 8 N -0.60 -11.52 2.43 -822.31 -2.00 -13.52 16 9 C 0.10 1.11 7.37 86.88 0.64 1.75 16 10 C -0.11 -1.40 6.19 31.38 0.19 -1.21 16 11 C -0.10 -2.61 0.77 -52.66 -0.04 -2.65 16 12 C -0.08 -2.39 6.22 31.54 0.20 -2.20 16 13 C 0.04 1.38 5.92 86.71 0.51 1.89 16 14 N -0.52 -20.42 5.26 -883.51 -4.64 -25.06 16 15 C 0.07 3.38 4.65 86.30 0.40 3.78 16 16 C 0.04 2.39 5.06 29.85 0.15 2.55 16 17 C -0.55 -33.24 9.11 25.60 0.23 -33.01 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.07 5.46 84.65 0.46 0.53 16 20 N -0.93 -58.60 13.29 21.45 0.28 -58.31 16 21 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 C 0.06 1.75 5.99 86.06 0.52 2.26 16 26 C 0.53 15.29 6.60 87.52 0.58 15.87 16 27 O -0.57 -22.43 17.15 -3.04 -0.05 -22.48 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 1.31 7.16 -2.38 -0.02 1.29 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.18 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.12 1.92 7.95 -2.39 -0.02 1.90 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.12 1.20 7.45 -2.39 -0.02 1.18 16 40 H 0.11 1.05 7.59 -2.39 -0.02 1.03 16 41 H 0.11 2.61 7.46 -2.39 -0.02 2.59 16 42 H 0.06 1.90 7.85 -2.38 -0.02 1.88 16 43 H 0.01 0.66 7.80 -2.39 -0.02 0.64 16 44 H 0.07 3.00 7.82 -2.39 -0.02 2.98 16 45 H 0.01 0.38 7.83 -2.39 -0.02 0.36 16 46 H 0.07 3.07 8.08 -2.39 -0.02 3.05 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H -0.01 -0.75 7.38 -2.39 -0.02 -0.77 16 49 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 50 H 0.03 1.00 7.07 -2.39 -0.02 0.99 16 51 H 0.11 2.81 7.40 -2.38 -0.02 2.79 16 Total: -1.00 -86.27 411.00 2.79 -83.48 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.90 Total: 8.91 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.45 Total: 0.44 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -6.36 Total: -96.90 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.22 Total: -44.19 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -86.27 2.79 -83.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.623 kcal (2) G-P(sol) polarization free energy of solvation -86.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds