Wall clock time and date at job start Tue Mar 31 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47106 * 2 1 4 4 O 1.45201 * 109.47317 * 120.00151 * 2 1 3 5 5 C 1.34223 * 117.00158 * 149.99874 * 4 2 1 6 6 O 1.20833 * 119.99918 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00325 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.47602 * 180.02562 * 7 5 4 9 9 C 1.48625 * 110.99865 * 307.45263 * 8 7 5 10 10 C 1.55164 * 103.35955 * 200.85197 * 9 8 7 11 11 C 1.53612 * 102.65806 * 36.58509 * 10 9 8 12 12 C 1.53634 * 110.82468 * 99.45566 * 11 10 9 13 13 C 1.54880 * 101.43218 * 96.68117 * 12 11 10 14 14 N 1.46880 * 105.42958 * 24.88213 * 13 12 11 15 15 C 1.46500 * 124.37410 * 163.04653 * 14 13 12 16 16 C 1.52997 * 109.47473 * 269.72824 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.34754 * 111.25553 * 342.78590 * 14 13 12 26 26 O 1.21285 * 125.13533 * 181.28276 * 25 14 13 27 27 C 1.48184 * 111.00154 * 190.00127 * 8 7 5 28 28 H 1.08996 * 109.46694 * 299.99934 * 1 2 3 29 29 H 1.09005 * 109.46745 * 59.99839 * 1 2 3 30 30 H 1.08994 * 109.46674 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47135 * 240.00241 * 2 1 3 32 32 H 1.09001 * 109.47043 * 300.00034 * 3 2 1 33 33 H 1.08998 * 109.46789 * 60.00299 * 3 2 1 34 34 H 1.09000 * 109.46882 * 179.97438 * 3 2 1 35 35 H 1.09008 * 109.47133 * 60.00038 * 7 5 4 36 36 H 1.09004 * 109.47197 * 300.00692 * 7 5 4 37 37 H 1.09001 * 110.64152 * 319.32254 * 9 8 7 38 38 H 1.09002 * 110.64194 * 82.22425 * 9 8 7 39 39 H 1.08993 * 110.77434 * 278.29590 * 10 9 8 40 40 H 1.09000 * 110.77321 * 154.87992 * 10 9 8 41 41 H 1.08998 * 111.01883 * 214.95100 * 12 11 10 42 42 H 1.09002 * 111.02415 * 338.80589 * 12 11 10 43 43 H 1.08997 * 110.39509 * 265.84579 * 13 12 11 44 44 H 1.09000 * 110.17573 * 143.80788 * 13 12 11 45 45 H 1.09002 * 109.47129 * 149.72567 * 15 14 13 46 46 H 1.08998 * 109.46845 * 29.73374 * 15 14 13 47 47 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 48 48 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 49 49 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 50 50 H 1.09001 * 110.02174 * 26.33676 * 27 8 7 51 51 H 1.09001 * 110.05914 * 264.95918 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 3.1937 -1.3170 1.0851 6 8 3.8019 -1.2989 0.0412 7 6 3.7601 -2.0488 2.2745 8 7 5.0493 -2.6514 1.9104 9 6 4.9233 -3.4759 0.6803 10 6 6.1488 -4.4245 0.7574 11 6 6.2553 -4.7151 2.2620 12 6 5.6248 -6.0743 2.6017 13 6 6.8699 -6.9954 2.6156 14 7 8.0057 -6.1126 2.9123 15 6 9.3171 -6.5778 3.3706 16 6 9.3353 -6.6265 4.8997 17 6 10.6842 -7.1057 5.3710 18 1 11.4518 -7.3505 4.6519 19 6 10.9385 -7.2304 6.7204 20 7 12.1158 -7.6481 7.1317 21 14 9.6110 -6.8063 7.9642 22 1 8.8025 -8.0169 8.2576 23 1 10.2433 -6.3181 9.2160 24 1 8.7317 -5.7467 7.4079 25 6 7.6875 -4.8200 2.7031 26 8 8.4434 -3.8828 2.8485 27 6 5.5225 -3.5735 2.9694 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 3.0671 -2.8315 2.5834 36 1 3.9062 -1.3479 3.0965 37 1 3.9945 -4.0461 0.6933 38 1 4.9753 -2.8486 -0.2097 39 1 7.0476 -3.9252 0.3956 40 1 5.9634 -5.3418 0.1986 41 1 5.1421 -6.0481 3.5786 42 1 4.9213 -6.3832 1.8286 43 1 7.0038 -7.4678 1.6425 44 1 6.7683 -7.7531 3.3926 45 1 10.0887 -5.8925 3.0197 46 1 9.5084 -7.5745 2.9729 47 1 8.5637 -7.3118 5.2506 48 1 9.1441 -5.6298 5.2972 49 1 12.2946 -7.7362 8.0810 50 1 4.6736 -3.9655 3.5296 51 1 6.2042 -3.0525 3.6416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274061422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:13 Heat of formation + Delta-G solvation = -108.617692 kcal Electronic energy + Delta-G solvation = -30049.812764 eV Core-core repulsion = 25949.451967 eV Total energy + Delta-G solvation = -4100.360797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29812 -40.68834 -38.30538 -36.92039 -36.05826 -34.15127 -33.61481 -32.62577 -31.02323 -29.45456 -28.54945 -27.77378 -27.29111 -25.21484 -23.55617 -22.87429 -21.68933 -21.40948 -20.83396 -20.25259 -18.74532 -18.06752 -17.06075 -16.77260 -16.62895 -16.43079 -15.89865 -15.38583 -15.09228 -14.91503 -14.60989 -14.36543 -14.16554 -13.94825 -13.77470 -13.48600 -13.37050 -12.95768 -12.80882 -12.75982 -12.68005 -12.59058 -12.33463 -12.26305 -12.20035 -11.98188 -11.87031 -11.58761 -11.56370 -11.37762 -11.11317 -11.00991 -10.96293 -10.84914 -10.47423 -10.27816 -10.03855 -9.88903 -9.37158 -9.17871 -8.70864 -8.56366 -8.16406 -6.06982 -4.05925 1.88994 2.16481 2.89696 3.28444 3.37063 3.42341 3.42609 3.66529 4.19135 4.25518 4.28196 4.30884 4.42847 4.43623 4.48229 4.65653 4.73092 4.78451 4.92770 4.98864 5.04464 5.04988 5.19775 5.22115 5.26907 5.27549 5.28591 5.33587 5.36332 5.53848 5.59074 5.64331 5.66356 5.68544 5.77386 5.82758 5.92578 5.99765 6.00912 6.20396 6.31770 6.53483 6.58246 6.59464 6.83197 7.15328 7.34465 7.48457 7.62327 7.74748 8.46819 8.59130 8.96197 9.54860 11.06109 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.002160 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.162156 B =12957.683257 C =13392.256892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.171 4.171 4 O -0.356 6.356 5 C 0.462 3.538 6 O -0.490 6.490 7 C 0.053 3.947 8 N -0.499 5.499 9 C 0.031 3.969 10 C -0.099 4.099 11 C -0.108 4.108 12 C -0.124 4.124 13 C 0.102 3.898 14 N -0.616 5.616 15 C 0.136 3.864 16 C -0.024 4.024 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.527 3.473 26 O -0.519 6.519 27 C 0.061 3.939 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.012 0.988 48 H 0.020 0.980 49 H 0.264 0.736 50 H 0.057 0.943 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.406 10.404 -15.074 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 C -0.228 4.228 4 O -0.273 6.273 5 C 0.305 3.695 6 O -0.376 6.376 7 C -0.076 4.076 8 N -0.225 5.225 9 C -0.096 4.096 10 C -0.138 4.138 11 C -0.112 4.112 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.349 5.349 15 C 0.016 3.984 16 C -0.062 4.062 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.190 1.190 25 C 0.313 3.687 26 O -0.394 6.394 27 C -0.067 4.067 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.030 0.970 48 H 0.039 0.961 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.285 11.295 -15.219 32.405 hybrid contribution -1.163 -0.562 0.931 1.592 sum -27.448 10.733 -14.288 32.752 Atomic orbital electron populations 1.21896 0.92361 1.03171 1.03252 1.22740 0.94897 0.92799 0.86914 1.22214 1.02404 0.95090 1.03093 1.86551 1.36571 1.62781 1.41425 1.23534 0.79072 0.76863 0.90074 1.90623 1.58587 1.57636 1.30786 1.21891 0.91659 0.99612 0.94464 1.64873 1.22855 1.30782 1.03971 1.23614 0.96374 0.94472 0.95106 1.22367 0.99562 0.99560 0.92274 1.21537 0.95414 0.96211 0.98022 1.22766 0.97185 0.93109 1.03091 1.22099 0.85108 0.93573 1.01399 1.48666 1.13802 1.06675 1.65769 1.21585 0.80518 0.99199 0.97059 1.19887 0.97881 0.97074 0.91340 1.20965 0.97331 1.44721 0.92946 0.90799 1.24981 0.95365 0.94441 0.98443 1.69907 1.21693 1.46946 1.15351 0.86767 0.82383 0.79196 0.80908 1.20327 1.21261 1.19042 1.20100 0.88611 0.83038 0.76996 1.90726 1.55827 1.40718 1.52143 1.22767 0.98747 0.91474 0.93663 0.91311 0.90319 0.91713 0.89699 0.90685 0.91488 0.91738 0.90397 0.86219 0.94134 0.87070 0.89827 0.90117 0.89825 0.89391 0.91324 0.90102 0.90490 0.91015 0.96985 0.96136 0.92651 0.92461 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.57 37.16 0.36 -0.36 16 2 C 0.08 0.58 3.18 -26.73 -0.09 0.50 16 3 C -0.17 -1.11 9.55 37.16 0.35 -0.75 16 4 O -0.36 -3.15 9.88 -39.24 -0.39 -3.54 16 5 C 0.46 4.64 7.64 36.00 0.28 4.92 16 6 O -0.49 -6.09 12.75 -18.76 -0.24 -6.33 16 7 C 0.05 0.46 5.63 -4.98 -0.03 0.44 16 8 N -0.50 -5.79 5.27 -232.05 -1.22 -7.01 16 9 C 0.03 0.34 5.31 -1.72 -0.01 0.33 16 10 C -0.10 -1.12 6.11 -25.27 -0.15 -1.28 16 11 C -0.11 -1.36 0.77 -155.25 -0.12 -1.48 16 12 C -0.12 -1.21 6.08 -25.41 -0.15 -1.36 16 13 C 0.10 1.23 7.37 -2.84 -0.02 1.21 16 14 N -0.62 -10.52 2.94 -172.42 -0.51 -11.02 16 15 C 0.14 2.78 5.89 -4.04 -0.02 2.76 16 16 C -0.02 -0.57 4.36 -27.88 -0.12 -0.69 16 17 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 18 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 21 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 25 C 0.53 9.37 6.63 -11.23 -0.07 9.29 16 26 O -0.52 -11.55 17.17 5.55 0.10 -11.45 16 27 C 0.06 0.73 6.01 -3.12 -0.02 0.71 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.68 7.16 -51.92 -0.37 0.31 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.52 7.82 -51.92 -0.41 0.12 16 36 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.37 8.01 -51.93 -0.42 -0.05 16 38 H 0.11 1.35 6.00 -51.93 -0.31 1.04 16 39 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.08 0.73 7.64 -51.93 -0.40 0.33 16 41 H 0.08 0.77 7.62 -51.93 -0.40 0.37 16 42 H 0.09 0.63 7.67 -51.93 -0.40 0.23 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.69 7.93 -51.93 -0.41 1.28 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 48 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.06 0.54 6.86 -51.93 -0.36 0.18 16 51 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -35.63 404.01 -9.17 -44.80 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.84 Total: -2.68 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.25 Total: 0.89 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.96 Total: -45.16 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.53 Total: -21.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.63 -9.17 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.816 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds