Wall clock time and date at job start Tue Mar 31 2020 22:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47156 * 2 1 4 4 O 1.45200 * 109.47079 * 120.00241 * 2 1 3 5 5 C 1.34228 * 116.99677 * 90.00102 * 4 2 1 6 6 O 1.20822 * 120.00329 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99553 * 179.97438 * 5 4 2 8 8 N 1.46907 * 109.46671 * 179.97438 * 7 5 4 9 9 C 1.48758 * 111.00048 * 285.35985 * 8 7 5 10 10 C 1.54462 * 104.76905 * 202.30847 * 9 8 7 11 11 C 1.54498 * 105.04139 * 23.55936 * 10 9 8 12 12 C 1.47403 * 110.99753 * 170.00144 * 8 7 5 13 13 C 1.53579 * 111.07034 * 278.32492 * 12 8 7 14 14 C 1.54712 * 101.50820 * 144.99881 * 13 12 8 15 15 N 1.46878 * 105.52324 * 335.50381 * 14 13 12 16 16 C 1.46502 * 124.37814 * 196.83837 * 15 14 13 17 17 C 1.52990 * 109.47189 * 270.00067 * 16 15 14 18 18 C 1.50700 * 109.47316 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00230 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99812 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47265 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46789 * 120.00125 * 22 20 18 25 25 H 1.48504 * 109.46907 * 239.99846 * 22 20 18 26 26 C 1.34764 * 111.25012 * 16.81710 * 15 14 13 27 27 O 1.21280 * 125.13489 * 178.70241 * 26 15 14 28 28 H 1.08998 * 109.47233 * 300.00036 * 1 2 3 29 29 H 1.09010 * 109.47166 * 59.99487 * 1 2 3 30 30 H 1.08999 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46955 * 240.00681 * 2 1 3 32 32 H 1.08995 * 109.47489 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47435 * 300.00089 * 3 2 1 34 34 H 1.09006 * 109.46475 * 59.99966 * 3 2 1 35 35 H 1.09002 * 109.47321 * 60.00590 * 7 5 4 36 36 H 1.08993 * 109.47445 * 300.00024 * 7 5 4 37 37 H 1.09001 * 110.38149 * 83.49364 * 9 8 7 38 38 H 1.08997 * 110.47832 * 321.17946 * 9 8 7 39 39 H 1.08996 * 110.33185 * 264.66896 * 10 9 8 40 40 H 1.09000 * 110.32557 * 142.44350 * 10 9 8 41 41 H 1.08999 * 110.37982 * 240.42990 * 11 10 9 42 42 H 1.09001 * 110.38648 * 118.07277 * 11 10 9 43 43 H 1.08996 * 111.01941 * 26.94257 * 13 12 8 44 44 H 1.09000 * 111.05103 * 263.06470 * 13 12 8 45 45 H 1.09000 * 110.24204 * 216.48788 * 14 13 12 46 46 H 1.08999 * 110.23729 * 94.51484 * 14 13 12 47 47 H 1.09003 * 109.46853 * 29.99827 * 16 15 14 48 48 H 1.08996 * 109.47134 * 149.99754 * 16 15 14 49 49 H 1.09003 * 109.47027 * 299.99653 * 17 16 15 50 50 H 1.08996 * 109.47338 * 59.99812 * 17 16 15 51 51 H 0.97001 * 120.00124 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0850 6 8 1.9982 -2.5748 0.0409 7 6 2.7193 -2.7852 2.2741 8 7 2.8574 -4.2017 1.9099 9 6 1.5274 -4.8625 1.8251 10 6 1.8223 -6.3668 2.0148 11 6 3.1644 -6.4191 2.7784 12 6 3.5663 -4.9511 2.9628 13 6 5.0868 -4.7749 2.8376 14 6 5.5209 -4.7754 4.3225 15 7 4.3377 -4.3436 5.0781 16 6 4.3700 -3.8618 6.4613 17 6 4.1919 -5.0430 7.4171 18 6 4.2257 -4.5475 8.8399 19 1 4.3603 -3.4951 9.0421 20 6 4.0837 -5.4374 9.8835 21 7 3.9184 -6.7186 9.6372 22 14 4.1249 -4.8229 11.6471 23 1 4.3207 -3.3509 11.6540 24 1 2.8421 -5.1553 12.3171 25 1 5.2454 -5.4742 12.3721 26 6 3.2186 -4.4475 4.3346 27 8 2.0992 -4.1799 4.7169 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 2.0104 -2.6894 3.0966 36 1 3.6883 -2.3927 2.5821 37 1 1.0766 -4.6844 0.8487 38 1 0.8711 -4.5016 2.6169 39 1 1.9178 -6.8590 1.0470 40 1 1.0336 -6.8360 2.6030 41 1 3.9151 -6.9472 2.1906 42 1 3.0316 -6.9009 3.7470 43 1 5.3324 -3.8270 2.3588 44 1 5.5347 -5.6101 2.2991 45 1 6.3422 -4.0752 4.4756 46 1 5.8180 -5.7786 4.6282 47 1 5.3275 -3.3785 6.6554 48 1 3.5634 -3.1450 6.6152 49 1 3.2344 -5.5263 7.2230 50 1 4.9985 -5.7598 7.2632 51 1 3.8189 -7.3447 10.3713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274061442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:40 Heat of formation + Delta-G solvation = -114.226073 kcal Electronic energy + Delta-G solvation = -31007.252893 eV Core-core repulsion = 26906.648899 eV Total energy + Delta-G solvation = -4100.603994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43842 -40.43887 -37.70620 -36.72206 -36.17262 -33.67285 -33.48654 -32.52607 -31.86804 -29.13727 -27.72465 -27.61346 -27.30120 -25.14399 -23.58461 -22.54523 -21.95159 -21.21100 -20.60455 -20.38500 -18.65879 -17.87729 -16.78408 -16.65398 -16.36077 -16.13354 -15.68911 -15.31748 -15.15159 -14.86958 -14.55696 -14.37897 -14.32632 -13.60407 -13.51538 -13.39900 -12.95157 -12.79695 -12.72945 -12.63547 -12.56377 -12.41143 -12.31278 -12.02208 -12.00117 -11.77204 -11.43192 -11.35569 -11.25019 -11.19786 -10.99478 -10.86362 -10.75454 -10.71665 -10.60740 -10.44240 -10.08472 -9.90114 -9.86087 -9.24968 -8.43012 -8.39185 -8.08875 -6.06178 -4.09796 2.15198 2.36516 2.79783 3.28126 3.34799 3.38167 3.44343 3.80658 4.31281 4.40706 4.42392 4.47905 4.55788 4.60094 4.64537 4.82580 4.85601 4.98196 5.12496 5.15103 5.18015 5.19783 5.30305 5.33898 5.39190 5.43432 5.50643 5.56443 5.65186 5.70162 5.71962 5.82938 5.83074 5.86138 5.93585 5.97156 5.99085 6.06354 6.11905 6.34790 6.38764 6.61803 6.65481 6.74705 6.90604 7.40737 7.61270 7.72739 7.77499 7.92840 8.28448 8.51666 8.96945 9.54653 11.05259 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002801 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.541750 B = 9995.067764 C =11014.353000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.356 6.356 5 C 0.469 3.531 6 O -0.492 6.492 7 C 0.036 3.964 8 N -0.465 5.465 9 C 0.027 3.973 10 C -0.119 4.119 11 C -0.100 4.100 12 C 0.057 3.943 13 C -0.114 4.114 14 C 0.098 3.902 15 N -0.606 5.606 16 C 0.127 3.873 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.498 3.502 27 O -0.527 6.527 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.020 0.980 50 H 0.017 0.983 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 8.759 -21.608 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 C -0.207 4.207 4 O -0.273 6.273 5 C 0.311 3.689 6 O -0.378 6.378 7 C -0.093 4.093 8 N -0.189 5.189 9 C -0.100 4.100 10 C -0.157 4.157 11 C -0.139 4.139 12 C -0.036 4.036 13 C -0.152 4.152 14 C -0.026 4.026 15 N -0.339 5.339 16 C 0.007 3.993 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.282 3.718 27 O -0.404 6.404 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.039 0.961 50 H 0.036 0.964 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.728 8.642 -22.086 23.728 hybrid contribution -0.365 0.272 1.803 1.859 sum -1.093 8.914 -20.284 22.183 Atomic orbital electron populations 1.22212 0.94355 1.03135 1.03058 1.22711 0.94590 0.93014 0.87077 1.21891 1.02137 0.93499 1.03154 1.86575 1.77223 1.22332 1.41182 1.23429 0.74528 0.81062 0.89909 1.90625 1.47088 1.69785 1.30266 1.21951 1.04127 0.89511 0.93703 1.65191 1.16154 0.99324 1.38200 1.23339 0.90262 0.94026 1.02410 1.22308 0.97089 0.95753 1.00574 1.22108 0.97960 0.92215 1.01573 1.22186 0.96118 0.96145 0.89132 1.22574 0.92389 1.04239 0.96007 1.22190 0.88939 1.01275 0.90186 1.48694 1.07472 1.63302 1.14416 1.21848 1.01309 0.98992 0.77163 1.19398 0.97691 0.92623 0.92848 1.21114 1.50272 0.94013 0.90722 0.92430 1.25002 0.95053 0.94847 0.99360 1.69976 1.49427 1.01853 1.31853 0.86499 0.77653 0.79012 0.84628 1.19640 1.20936 1.20959 1.20976 0.84951 0.78247 0.87585 1.90692 1.21832 1.51305 1.76575 0.91443 0.90763 0.91946 0.89739 0.91649 0.90428 0.91299 0.88261 0.86967 0.89279 0.92108 0.90753 0.90861 0.89678 0.90290 0.89713 0.88619 0.90275 0.90636 0.91474 0.91151 0.96141 0.96421 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.55 37.16 0.35 -1.10 16 2 C 0.08 0.78 3.18 -26.73 -0.09 0.69 16 3 C -0.15 -1.05 9.57 37.16 0.36 -0.70 16 4 O -0.36 -4.35 9.88 -39.25 -0.39 -4.74 16 5 C 0.47 6.28 7.78 36.01 0.28 6.56 16 6 O -0.49 -7.37 14.48 -18.75 -0.27 -7.64 16 7 C 0.04 0.49 4.40 -4.97 -0.02 0.46 16 8 N -0.46 -6.28 4.66 -218.57 -1.02 -7.29 16 9 C 0.03 0.37 5.58 -2.03 -0.01 0.35 16 10 C -0.12 -1.43 7.01 -25.18 -0.18 -1.61 16 11 C -0.10 -1.26 6.17 -25.78 -0.16 -1.42 16 12 C 0.06 0.78 0.56 -132.25 -0.07 0.71 16 13 C -0.11 -1.23 6.29 -25.53 -0.16 -1.39 16 14 C 0.10 1.25 7.37 -2.94 -0.02 1.23 16 15 N -0.61 -10.47 2.95 -172.54 -0.51 -10.98 16 16 C 0.13 2.60 5.88 -4.05 -0.02 2.57 16 17 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 18 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 22 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.50 8.77 5.47 -11.23 -0.06 8.71 16 27 O -0.53 -11.18 14.82 5.56 0.08 -11.10 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.86 7.16 -51.92 -0.37 0.49 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.53 5.92 -51.93 -0.31 1.22 16 36 H 0.11 1.37 7.28 -51.93 -0.38 1.00 16 37 H 0.09 1.20 7.29 -51.93 -0.38 0.82 16 38 H 0.06 0.93 6.80 -51.93 -0.35 0.58 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.87 7.46 -51.93 -0.39 0.48 16 42 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 43 H 0.08 0.84 7.39 -51.93 -0.38 0.46 16 44 H 0.10 0.83 7.45 -51.93 -0.39 0.44 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.07 1.52 7.95 -51.93 -0.41 1.11 16 49 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -33.77 404.04 -9.47 -43.23 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.80 Total: 0.06 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.36 Total: 1.90 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.79 Total: -44.31 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.58 Total: -23.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.77 -9.47 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.993 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds