Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47156 * 2 1 4 4 O 1.45200 * 109.47079 * 120.00241 * 2 1 3 5 5 C 1.34228 * 116.99677 * 90.00102 * 4 2 1 6 6 O 1.20822 * 120.00329 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99553 * 179.97438 * 5 4 2 8 8 N 1.46907 * 109.46671 * 179.97438 * 7 5 4 9 9 C 1.48758 * 111.00048 * 285.35985 * 8 7 5 10 10 C 1.54462 * 104.76905 * 202.30847 * 9 8 7 11 11 C 1.54498 * 105.04139 * 23.55936 * 10 9 8 12 12 C 1.47403 * 110.99753 * 170.00144 * 8 7 5 13 13 C 1.53579 * 111.07034 * 278.32492 * 12 8 7 14 14 C 1.54712 * 101.50820 * 144.99881 * 13 12 8 15 15 N 1.46878 * 105.52324 * 335.50381 * 14 13 12 16 16 C 1.46502 * 124.37814 * 196.83837 * 15 14 13 17 17 C 1.52990 * 109.47189 * 270.00067 * 16 15 14 18 18 C 1.50700 * 109.47316 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00230 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99812 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47265 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46789 * 120.00125 * 22 20 18 25 25 H 1.48504 * 109.46907 * 239.99846 * 22 20 18 26 26 C 1.34764 * 111.25012 * 16.81710 * 15 14 13 27 27 O 1.21280 * 125.13489 * 178.70241 * 26 15 14 28 28 H 1.08998 * 109.47233 * 300.00036 * 1 2 3 29 29 H 1.09010 * 109.47166 * 59.99487 * 1 2 3 30 30 H 1.08999 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46955 * 240.00681 * 2 1 3 32 32 H 1.08995 * 109.47489 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47435 * 300.00089 * 3 2 1 34 34 H 1.09006 * 109.46475 * 59.99966 * 3 2 1 35 35 H 1.09002 * 109.47321 * 60.00590 * 7 5 4 36 36 H 1.08993 * 109.47445 * 300.00024 * 7 5 4 37 37 H 1.09001 * 110.38149 * 83.49364 * 9 8 7 38 38 H 1.08997 * 110.47832 * 321.17946 * 9 8 7 39 39 H 1.08996 * 110.33185 * 264.66896 * 10 9 8 40 40 H 1.09000 * 110.32557 * 142.44350 * 10 9 8 41 41 H 1.08999 * 110.37982 * 240.42990 * 11 10 9 42 42 H 1.09001 * 110.38648 * 118.07277 * 11 10 9 43 43 H 1.08996 * 111.01941 * 26.94257 * 13 12 8 44 44 H 1.09000 * 111.05103 * 263.06470 * 13 12 8 45 45 H 1.09000 * 110.24204 * 216.48788 * 14 13 12 46 46 H 1.08999 * 110.23729 * 94.51484 * 14 13 12 47 47 H 1.09003 * 109.46853 * 29.99827 * 16 15 14 48 48 H 1.08996 * 109.47134 * 149.99754 * 16 15 14 49 49 H 1.09003 * 109.47027 * 299.99653 * 17 16 15 50 50 H 1.08996 * 109.47338 * 59.99812 * 17 16 15 51 51 H 0.97001 * 120.00124 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0850 6 8 1.9982 -2.5748 0.0409 7 6 2.7193 -2.7852 2.2741 8 7 2.8574 -4.2017 1.9099 9 6 1.5274 -4.8625 1.8251 10 6 1.8223 -6.3668 2.0148 11 6 3.1644 -6.4191 2.7784 12 6 3.5663 -4.9511 2.9628 13 6 5.0868 -4.7749 2.8376 14 6 5.5209 -4.7754 4.3225 15 7 4.3377 -4.3436 5.0781 16 6 4.3700 -3.8618 6.4613 17 6 4.1919 -5.0430 7.4171 18 6 4.2257 -4.5475 8.8399 19 1 4.3603 -3.4951 9.0421 20 6 4.0837 -5.4374 9.8835 21 7 3.9184 -6.7186 9.6372 22 14 4.1249 -4.8229 11.6471 23 1 4.3207 -3.3509 11.6540 24 1 2.8421 -5.1553 12.3171 25 1 5.2454 -5.4742 12.3721 26 6 3.2186 -4.4475 4.3346 27 8 2.0992 -4.1799 4.7169 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 2.0104 -2.6894 3.0966 36 1 3.6883 -2.3927 2.5821 37 1 1.0766 -4.6844 0.8487 38 1 0.8711 -4.5016 2.6169 39 1 1.9178 -6.8590 1.0470 40 1 1.0336 -6.8360 2.6030 41 1 3.9151 -6.9472 2.1906 42 1 3.0316 -6.9009 3.7470 43 1 5.3324 -3.8270 2.3588 44 1 5.5347 -5.6101 2.2991 45 1 6.3422 -4.0752 4.4756 46 1 5.8180 -5.7786 4.6282 47 1 5.3275 -3.3785 6.6554 48 1 3.5634 -3.1450 6.6152 49 1 3.2344 -5.5263 7.2230 50 1 4.9985 -5.7598 7.2632 51 1 3.8189 -7.3447 10.3713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274061442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = -135.756203 kcal Electronic energy + Delta-G solvation = -31008.186510 eV Core-core repulsion = 26906.648899 eV Total energy + Delta-G solvation = -4101.537611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61512 -41.48330 -38.90542 -37.77516 -37.57641 -35.59751 -34.32743 -33.62822 -33.42513 -30.80056 -28.85286 -28.36039 -28.22358 -27.00468 -24.78093 -23.61824 -23.45298 -22.20832 -21.79535 -21.54244 -19.97950 -18.90362 -18.69280 -17.82241 -17.50926 -17.29896 -16.90862 -16.77300 -16.40599 -16.26285 -15.88308 -15.47654 -15.22362 -14.96768 -14.59957 -14.51230 -14.35883 -14.24612 -13.97454 -13.88830 -13.52789 -13.37754 -13.20453 -13.19467 -13.16789 -12.90562 -12.81046 -12.71147 -12.53405 -12.47331 -12.26386 -12.02113 -11.94673 -11.93535 -11.89229 -11.64967 -11.53818 -11.45668 -11.39616 -11.11014 -10.62216 -9.72640 -9.50572 -8.25254 -6.37795 1.08532 1.37618 1.38432 1.39475 1.46812 1.52636 2.06658 2.39846 2.72085 3.08693 3.26367 3.37762 3.48296 3.67275 3.78388 3.82350 3.91160 3.97229 4.11048 4.11943 4.13192 4.18477 4.26546 4.30596 4.49992 4.62253 4.62514 4.63773 4.71961 4.72729 4.77857 4.80173 4.82083 4.85861 4.91941 5.01752 5.03283 5.09486 5.12281 5.14532 5.19117 5.30592 5.43486 5.44475 5.51571 5.57078 5.59065 5.80640 6.13473 6.22284 6.69905 6.77905 7.11368 7.32261 8.87073 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002801 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.541750 B = 9995.067764 C =11014.353000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.363 6.363 5 C 0.475 3.525 6 O -0.509 6.509 7 C 0.038 3.962 8 N -0.455 5.455 9 C 0.027 3.973 10 C -0.116 4.116 11 C -0.101 4.101 12 C 0.060 3.940 13 C -0.099 4.099 14 C 0.091 3.909 15 N -0.613 5.613 16 C 0.142 3.858 17 C 0.024 3.976 18 C -0.543 4.543 19 H 0.067 0.933 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.258 1.258 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.486 3.514 27 O -0.575 6.575 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.091 0.909 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.052 0.948 49 H -0.028 1.028 50 H 0.002 0.998 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 9.944 -22.947 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 C -0.201 4.201 4 O -0.280 6.280 5 C 0.317 3.683 6 O -0.397 6.397 7 C -0.091 4.091 8 N -0.178 5.178 9 C -0.100 4.100 10 C -0.154 4.154 11 C -0.139 4.139 12 C -0.033 4.033 13 C -0.136 4.136 14 C -0.031 4.031 15 N -0.345 5.345 16 C 0.021 3.979 17 C -0.014 4.014 18 C -0.582 4.582 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.209 1.209 25 H -0.199 1.199 26 C 0.273 3.727 27 O -0.455 6.455 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.051 0.949 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.147 0.853 45 H 0.124 0.876 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.071 0.929 49 H -0.010 1.010 50 H 0.020 0.980 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.191 9.842 -23.454 25.463 hybrid contribution -1.014 -0.080 2.198 2.422 sum 0.177 9.762 -21.256 23.391 Atomic orbital electron populations 1.22222 0.93684 1.02243 1.04386 1.23057 0.95279 0.94127 0.85822 1.21914 1.02202 0.91649 1.04375 1.86569 1.77067 1.21692 1.42680 1.23301 0.74080 0.81450 0.89419 1.90608 1.47970 1.70227 1.30863 1.21908 1.04234 0.89786 0.93151 1.65282 1.15861 0.99265 1.37429 1.23301 0.90122 0.95214 1.01382 1.22335 0.96732 0.94602 1.01750 1.22198 0.99220 0.91573 1.00918 1.22291 0.98258 0.96479 0.86280 1.22657 0.89559 1.06577 0.94851 1.22524 0.87838 1.01903 0.90823 1.48774 1.09329 1.63010 1.13359 1.21396 1.01930 0.96356 0.78261 1.19200 0.94316 0.93921 0.93918 1.21577 1.50052 0.94581 0.91951 0.91525 1.26004 0.94431 0.94942 1.04384 1.70114 1.50373 1.03297 1.33461 0.85347 0.77747 0.79120 0.78527 1.18194 1.20872 1.19867 1.21842 0.84234 0.77306 0.89350 1.90657 1.23806 1.53124 1.77917 0.91358 0.88198 0.93910 0.90286 0.91568 0.87944 0.91294 0.90699 0.85528 0.89077 0.94894 0.88127 0.91602 0.86116 0.92801 0.88126 0.85264 0.87635 0.90601 0.88790 0.92924 1.00999 0.97990 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.55 71.98 0.69 -2.06 16 2 C 0.07 1.30 3.18 30.59 0.10 1.40 16 3 C -0.14 -1.77 9.57 71.98 0.69 -1.08 16 4 O -0.36 -8.81 9.88 -51.40 -0.51 -9.32 16 5 C 0.47 12.70 7.78 71.24 0.55 13.26 16 6 O -0.51 -15.09 14.48 21.98 0.32 -14.77 16 7 C 0.04 1.04 4.40 85.56 0.38 1.41 16 8 N -0.45 -11.97 4.66 -845.41 -3.94 -15.91 16 9 C 0.03 0.76 5.58 86.44 0.48 1.24 16 10 C -0.12 -2.73 7.01 31.60 0.22 -2.51 16 11 C -0.10 -2.42 6.17 31.21 0.19 -2.23 16 12 C 0.06 1.58 0.56 2.83 0.00 1.58 16 13 C -0.10 -1.81 6.29 31.37 0.20 -1.61 16 14 C 0.09 2.12 7.37 86.89 0.64 2.76 16 15 N -0.61 -21.25 2.95 -818.19 -2.41 -23.66 16 16 C 0.14 5.92 5.88 86.38 0.51 6.43 16 17 C 0.02 1.31 5.30 29.84 0.16 1.47 16 18 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 19 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 22 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 C 0.49 17.63 5.47 87.50 0.48 18.11 16 27 O -0.57 -26.06 14.82 -3.03 -0.04 -26.11 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.54 7.16 -2.38 -0.02 1.53 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 2.45 5.92 -2.39 -0.01 2.44 16 36 H 0.13 2.99 7.28 -2.39 -0.02 2.97 16 37 H 0.09 2.46 7.29 -2.39 -0.02 2.45 16 38 H 0.03 1.09 6.80 -2.39 -0.02 1.07 16 39 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.12 2.04 7.46 -2.39 -0.02 2.02 16 42 H 0.05 1.57 7.85 -2.39 -0.02 1.55 16 43 H 0.10 1.59 7.39 -2.39 -0.02 1.58 16 44 H 0.13 1.59 7.45 -2.39 -0.02 1.58 16 45 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 48 H 0.05 2.36 7.95 -2.39 -0.02 2.34 16 49 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 50 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -77.44 404.04 2.61 -74.84 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.90 Total: 17.74 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 5.98 Total: 7.93 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -6.06 Total: -96.69 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.23 Total: -50.20 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -77.44 2.61 -74.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.921 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds