Wall clock time and date at job start Tue Mar 31 2020 22:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46875 * 2 1 4 4 O 1.45197 * 109.47076 * 119.99839 * 2 1 3 5 5 C 1.34235 * 117.00203 * 89.99866 * 4 2 1 6 6 O 1.20825 * 119.99753 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00223 * 179.97438 * 5 4 2 8 8 N 1.46895 * 109.46826 * 180.02562 * 7 5 4 9 9 C 1.47718 * 111.00131 * 57.35856 * 8 7 5 10 10 C 1.54402 * 107.20501 * 122.13216 * 9 8 7 11 11 C 1.55326 * 103.13298 * 22.18509 * 10 9 8 12 12 C 1.46722 * 110.99600 * 177.82264 * 8 7 5 13 13 C 1.53613 * 111.40136 * 94.57786 * 12 8 7 14 14 C 1.54864 * 101.45099 * 214.19333 * 13 12 8 15 15 N 1.46877 * 105.43529 * 24.83515 * 14 13 12 16 16 C 1.46500 * 124.37316 * 163.10618 * 15 14 13 17 17 C 1.52998 * 109.47158 * 269.72567 * 16 15 14 18 18 C 1.50698 * 109.47435 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00242 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99871 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47239 * 59.99832 * 22 20 18 24 24 H 1.48500 * 109.47142 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46886 * 299.99680 * 22 20 18 26 26 C 1.34745 * 111.25487 * 342.83378 * 15 14 13 27 27 O 1.21283 * 125.12912 * 181.26434 * 26 15 14 28 28 H 1.08999 * 109.47526 * 300.00049 * 1 2 3 29 29 H 1.09005 * 109.46921 * 60.00451 * 1 2 3 30 30 H 1.09007 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47526 * 239.99951 * 2 1 3 32 32 H 1.09006 * 109.47160 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47187 * 299.99540 * 3 2 1 34 34 H 1.08998 * 109.47591 * 59.99803 * 3 2 1 35 35 H 1.08998 * 109.46946 * 60.00335 * 7 5 4 36 36 H 1.09002 * 109.46779 * 300.00229 * 7 5 4 37 37 H 1.09003 * 109.88743 * 241.52689 * 9 8 7 38 38 H 1.09004 * 109.89380 * 2.72961 * 9 8 7 39 39 H 1.08995 * 110.68722 * 140.59818 * 10 9 8 40 40 H 1.09006 * 110.68025 * 263.60529 * 10 9 8 41 41 H 1.09004 * 111.00937 * 207.35376 * 11 10 9 42 42 H 1.08995 * 111.00800 * 83.48406 * 11 10 9 43 43 H 1.08997 * 111.01906 * 332.44041 * 13 12 8 44 44 H 1.08999 * 111.01730 * 96.32497 * 13 12 8 45 45 H 1.08999 * 110.36902 * 265.80081 * 14 13 12 46 46 H 1.08996 * 110.18212 * 143.77424 * 14 13 12 47 47 H 1.08993 * 109.47748 * 149.71937 * 16 15 14 48 48 H 1.09001 * 109.46840 * 29.72124 * 16 15 14 49 49 H 1.09001 * 109.46883 * 299.99531 * 17 16 15 50 50 H 1.08993 * 109.47305 * 59.99099 * 17 16 15 51 51 H 0.97006 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 -2.0075 1.0852 6 8 1.9982 -2.5748 0.0411 7 6 2.7193 -2.7851 2.2744 8 7 2.8585 -4.2013 1.9100 9 6 3.7654 -4.3642 0.7554 10 6 4.9121 -5.2961 1.2032 11 6 4.2950 -6.0628 2.4049 12 6 3.3953 -4.9821 3.0302 13 6 2.2704 -5.6241 3.8560 14 6 2.8687 -5.5721 5.2835 15 7 3.8356 -4.4667 5.2620 16 6 4.3805 -3.8211 6.4588 17 6 3.4882 -2.6426 6.8536 18 6 4.0483 -1.9788 8.0851 19 1 4.9503 -2.3596 8.5409 20 6 3.4093 -0.8853 8.6299 21 7 2.3113 -0.4212 8.0745 22 14 4.1033 -0.0629 10.1568 23 1 5.4760 0.4278 9.8743 24 1 3.2372 1.0810 10.5399 25 1 4.1477 -1.0441 11.2706 26 6 4.1613 -4.1271 3.9993 27 8 4.9538 -3.2621 3.6916 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.0104 -2.6892 3.0969 36 1 3.6884 -2.3925 2.5823 37 1 3.2266 -4.8135 -0.0788 38 1 4.1685 -3.3952 0.4608 39 1 5.1820 -5.9862 0.4039 40 1 5.7794 -4.7155 1.5180 41 1 5.0682 -6.3806 3.1044 42 1 3.7049 -6.9135 2.0641 43 1 1.3540 -5.0375 3.7909 44 1 2.0961 -6.6542 3.5451 45 1 3.3728 -6.5096 5.5180 46 1 2.0839 -5.3724 6.0131 47 1 5.3877 -3.4604 6.2505 48 1 4.4143 -4.5410 7.2765 49 1 3.4544 -1.9226 6.0359 50 1 2.4810 -3.0033 7.0619 51 1 1.8614 0.3480 8.4580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274061443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:43 Heat of formation + Delta-G solvation = -109.236900 kcal Electronic energy + Delta-G solvation = -31452.919503 eV Core-core repulsion = 27352.531855 eV Total energy + Delta-G solvation = -4100.387648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45483 -40.28738 -37.73539 -36.56716 -36.19809 -33.66354 -33.28125 -32.32291 -31.84840 -29.14689 -27.74650 -27.41819 -27.12525 -25.12494 -23.58743 -22.43827 -21.85118 -21.32892 -20.50205 -20.21724 -18.68710 -17.69181 -16.72652 -16.56299 -16.24486 -15.99562 -15.57751 -15.52278 -15.20765 -14.56891 -14.48614 -14.34499 -13.91235 -13.71080 -13.45378 -13.28619 -12.95726 -12.94272 -12.74345 -12.43526 -12.34989 -12.20691 -12.16761 -12.05606 -11.87784 -11.69453 -11.57911 -11.28078 -11.20489 -11.00177 -10.99082 -10.92533 -10.75614 -10.61013 -10.55487 -10.17160 -10.05236 -9.90895 -9.73701 -9.26390 -8.40036 -8.33419 -7.99694 -6.04788 -4.08737 2.32282 2.56951 2.77895 3.31168 3.35399 3.36729 3.44978 3.86667 4.34779 4.40454 4.43449 4.65564 4.67279 4.76201 4.79613 4.85585 5.01048 5.02667 5.11149 5.19986 5.31412 5.37464 5.38619 5.50427 5.58633 5.60226 5.62723 5.66126 5.71611 5.73283 5.77213 5.83099 5.89758 5.92655 5.94623 6.02116 6.02573 6.08373 6.23081 6.40314 6.55005 6.74552 6.75323 6.82944 6.90292 7.40702 7.61253 7.77601 7.89979 7.93299 8.28991 8.50915 8.97226 9.55633 11.06385 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.004055 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.025365 B = 6902.898816 C = 9394.822064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.350 6.350 5 C 0.471 3.529 6 O -0.502 6.502 7 C 0.025 3.975 8 N -0.482 5.482 9 C 0.054 3.946 10 C -0.145 4.145 11 C -0.102 4.102 12 C 0.065 3.935 13 C -0.112 4.112 14 C 0.097 3.903 15 N -0.604 5.604 16 C 0.126 3.874 17 C 0.013 3.987 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.501 3.499 27 O -0.528 6.528 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.020 0.980 50 H 0.018 0.982 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -8.577 -15.748 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 C -0.208 4.208 4 O -0.266 6.266 5 C 0.314 3.686 6 O -0.389 6.389 7 C -0.103 4.103 8 N -0.207 5.207 9 C -0.073 4.073 10 C -0.183 4.183 11 C -0.141 4.141 12 C -0.029 4.029 13 C -0.150 4.150 14 C -0.027 4.027 15 N -0.337 5.337 16 C 0.006 3.994 17 C -0.024 4.024 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 C 0.286 3.714 27 O -0.406 6.406 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.039 0.961 50 H 0.036 0.964 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.928 -8.239 -16.273 18.341 hybrid contribution 0.875 0.932 1.094 1.683 sum -1.053 -7.307 -15.179 16.879 Atomic orbital electron populations 1.22208 0.94350 1.03095 1.03038 1.22698 0.94617 0.93058 0.86998 1.21896 1.02205 0.93538 1.03161 1.86626 1.76923 1.22138 1.40962 1.23471 0.74063 0.81172 0.89923 1.90612 1.47819 1.69791 1.30709 1.22361 1.05337 0.88288 0.94285 1.63619 1.46438 1.06712 1.03892 1.22863 0.91645 0.99275 0.93563 1.22924 0.98840 0.98671 0.97889 1.22484 0.98044 0.96463 0.97071 1.22111 0.95087 0.94449 0.91204 1.22568 0.97820 1.02121 0.92517 1.22227 0.92542 0.89896 0.97986 1.48681 1.43477 1.34511 1.06984 1.21858 0.98534 0.95940 0.83111 1.19387 0.94668 0.91736 0.96652 1.21023 1.10550 1.13640 1.11135 0.92566 1.24980 0.94888 0.96856 0.97367 1.69958 1.17944 1.24733 1.40332 0.86625 0.79040 0.79000 0.83154 1.20149 1.21228 1.20188 1.20890 0.82354 0.83768 0.84374 1.90628 1.35891 1.33077 1.80967 0.91321 0.90895 0.91929 0.89942 0.91652 0.90535 0.91093 0.86588 0.86499 0.89517 0.92783 0.90514 0.90775 0.90386 0.89390 0.89163 0.88943 0.91230 0.89778 0.91111 0.91471 0.96138 0.96403 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.55 37.16 0.35 -1.47 16 2 C 0.08 0.99 3.18 -26.73 -0.09 0.91 16 3 C -0.15 -1.51 9.57 37.16 0.36 -1.15 16 4 O -0.35 -5.47 9.88 -39.27 -0.39 -5.85 16 5 C 0.47 7.57 7.27 36.01 0.26 7.83 16 6 O -0.50 -8.34 13.79 -18.75 -0.26 -8.60 16 7 C 0.03 0.42 4.56 -4.98 -0.02 0.39 16 8 N -0.48 -7.02 4.77 -219.63 -1.05 -8.06 16 9 C 0.05 0.73 5.20 -2.64 -0.01 0.71 16 10 C -0.14 -1.69 6.85 -24.76 -0.17 -1.85 16 11 C -0.10 -1.13 5.97 -25.03 -0.15 -1.28 16 12 C 0.06 0.88 0.70 -132.29 -0.09 0.79 16 13 C -0.11 -1.28 6.47 -25.43 -0.16 -1.45 16 14 C 0.10 1.24 7.37 -2.85 -0.02 1.22 16 15 N -0.60 -10.44 2.94 -172.44 -0.51 -10.95 16 16 C 0.13 2.56 5.89 -4.04 -0.02 2.54 16 17 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 22 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.50 8.82 5.58 -11.23 -0.06 8.75 16 27 O -0.53 -11.09 15.10 5.55 0.08 -11.00 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 36 H 0.12 2.20 5.14 -51.93 -0.27 1.93 16 37 H 0.09 1.13 8.06 -51.93 -0.42 0.72 16 38 H 0.05 0.80 6.70 -51.93 -0.35 0.46 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.85 8.00 -51.93 -0.42 0.44 16 42 H 0.09 0.78 7.78 -51.93 -0.40 0.38 16 43 H 0.09 1.10 8.12 -51.93 -0.42 0.67 16 44 H 0.09 0.79 7.63 -51.93 -0.40 0.40 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 49 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 405.20 15.07 6.11 6.11 Total: -1.00 -33.09 405.20 -9.60 -42.69 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.91 Total: 2.18 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.39 Total: 2.87 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.82 Total: -44.83 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.56 Total: -25.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.09 -9.60 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.546 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds