Wall clock time and date at job start Tue Mar 31 2020 22:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46875 * 2 1 4 4 O 1.45197 * 109.47076 * 119.99839 * 2 1 3 5 5 C 1.34235 * 117.00203 * 89.99866 * 4 2 1 6 6 O 1.20825 * 119.99753 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00223 * 179.97438 * 5 4 2 8 8 N 1.46895 * 109.46826 * 180.02562 * 7 5 4 9 9 C 1.47718 * 111.00131 * 57.35856 * 8 7 5 10 10 C 1.54402 * 107.20501 * 122.13216 * 9 8 7 11 11 C 1.55326 * 103.13298 * 22.18509 * 10 9 8 12 12 C 1.46722 * 110.99600 * 177.82264 * 8 7 5 13 13 C 1.53613 * 111.40136 * 94.57786 * 12 8 7 14 14 C 1.54864 * 101.45099 * 214.19333 * 13 12 8 15 15 N 1.46877 * 105.43529 * 24.83515 * 14 13 12 16 16 C 1.46500 * 124.37316 * 163.10618 * 15 14 13 17 17 C 1.52998 * 109.47158 * 269.72567 * 16 15 14 18 18 C 1.50698 * 109.47435 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00242 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99871 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47239 * 59.99832 * 22 20 18 24 24 H 1.48500 * 109.47142 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46886 * 299.99680 * 22 20 18 26 26 C 1.34745 * 111.25487 * 342.83378 * 15 14 13 27 27 O 1.21283 * 125.12912 * 181.26434 * 26 15 14 28 28 H 1.08999 * 109.47526 * 300.00049 * 1 2 3 29 29 H 1.09005 * 109.46921 * 60.00451 * 1 2 3 30 30 H 1.09007 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47526 * 239.99951 * 2 1 3 32 32 H 1.09006 * 109.47160 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47187 * 299.99540 * 3 2 1 34 34 H 1.08998 * 109.47591 * 59.99803 * 3 2 1 35 35 H 1.08998 * 109.46946 * 60.00335 * 7 5 4 36 36 H 1.09002 * 109.46779 * 300.00229 * 7 5 4 37 37 H 1.09003 * 109.88743 * 241.52689 * 9 8 7 38 38 H 1.09004 * 109.89380 * 2.72961 * 9 8 7 39 39 H 1.08995 * 110.68722 * 140.59818 * 10 9 8 40 40 H 1.09006 * 110.68025 * 263.60529 * 10 9 8 41 41 H 1.09004 * 111.00937 * 207.35376 * 11 10 9 42 42 H 1.08995 * 111.00800 * 83.48406 * 11 10 9 43 43 H 1.08997 * 111.01906 * 332.44041 * 13 12 8 44 44 H 1.08999 * 111.01730 * 96.32497 * 13 12 8 45 45 H 1.08999 * 110.36902 * 265.80081 * 14 13 12 46 46 H 1.08996 * 110.18212 * 143.77424 * 14 13 12 47 47 H 1.08993 * 109.47748 * 149.71937 * 16 15 14 48 48 H 1.09001 * 109.46840 * 29.72124 * 16 15 14 49 49 H 1.09001 * 109.46883 * 299.99531 * 17 16 15 50 50 H 1.08993 * 109.47305 * 59.99099 * 17 16 15 51 51 H 0.97006 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 -2.0075 1.0852 6 8 1.9982 -2.5748 0.0411 7 6 2.7193 -2.7851 2.2744 8 7 2.8585 -4.2013 1.9100 9 6 3.7654 -4.3642 0.7554 10 6 4.9121 -5.2961 1.2032 11 6 4.2950 -6.0628 2.4049 12 6 3.3953 -4.9821 3.0302 13 6 2.2704 -5.6241 3.8560 14 6 2.8687 -5.5721 5.2835 15 7 3.8356 -4.4667 5.2620 16 6 4.3805 -3.8211 6.4588 17 6 3.4882 -2.6426 6.8536 18 6 4.0483 -1.9788 8.0851 19 1 4.9503 -2.3596 8.5409 20 6 3.4093 -0.8853 8.6299 21 7 2.3113 -0.4212 8.0745 22 14 4.1033 -0.0629 10.1568 23 1 5.4760 0.4278 9.8743 24 1 3.2372 1.0810 10.5399 25 1 4.1477 -1.0441 11.2706 26 6 4.1613 -4.1271 3.9993 27 8 4.9538 -3.2621 3.6916 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.0104 -2.6892 3.0969 36 1 3.6884 -2.3925 2.5823 37 1 3.2266 -4.8135 -0.0788 38 1 4.1685 -3.3952 0.4608 39 1 5.1820 -5.9862 0.4039 40 1 5.7794 -4.7155 1.5180 41 1 5.0682 -6.3806 3.1044 42 1 3.7049 -6.9135 2.0641 43 1 1.3540 -5.0375 3.7909 44 1 2.0961 -6.6542 3.5451 45 1 3.3728 -6.5096 5.5180 46 1 2.0839 -5.3724 6.0131 47 1 5.3877 -3.4604 6.2505 48 1 4.4143 -4.5410 7.2765 49 1 3.4544 -1.9226 6.0359 50 1 2.4810 -3.0033 7.0619 51 1 1.8614 0.3480 8.4580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274061443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:42 Heat of formation + Delta-G solvation = -130.355321 kcal Electronic energy + Delta-G solvation = -31453.835266 eV Core-core repulsion = 27352.531855 eV Total energy + Delta-G solvation = -4101.303411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.67425 -41.53754 -38.98356 -37.80105 -37.59496 -35.59091 -34.33487 -33.63620 -33.28579 -30.81026 -28.86977 -28.33952 -28.23880 -26.98226 -24.79202 -23.70855 -23.32507 -22.39203 -21.75352 -21.52336 -20.01386 -18.94799 -18.66271 -17.78174 -17.48780 -17.41769 -16.92575 -16.78964 -16.49045 -16.29529 -15.73555 -15.46273 -15.07528 -14.86934 -14.80667 -14.57483 -14.39781 -14.21845 -13.95956 -13.90307 -13.58958 -13.39031 -13.25293 -13.20370 -12.93988 -12.92939 -12.80766 -12.78587 -12.63045 -12.49266 -12.21691 -12.09391 -11.97912 -11.90282 -11.84639 -11.68316 -11.56961 -11.43786 -11.39272 -11.01187 -10.59440 -9.69754 -9.38079 -8.23356 -6.36296 1.00478 1.35959 1.39304 1.42635 1.47364 1.50483 2.08603 2.40969 2.69520 3.10314 3.27194 3.38357 3.56006 3.64694 3.73921 3.83995 3.87576 3.97397 4.04637 4.06528 4.13465 4.25560 4.29494 4.32089 4.52673 4.60160 4.64337 4.68281 4.70009 4.73792 4.74174 4.76508 4.86330 4.87154 4.89261 5.00369 5.05405 5.07673 5.14965 5.15818 5.26815 5.31519 5.39995 5.45154 5.53852 5.57857 5.72415 5.81337 6.14458 6.23485 6.62704 6.78612 7.11455 7.33670 8.88259 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.004055 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.025365 B = 6902.898816 C = 9394.822064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.369 6.369 5 C 0.474 3.526 6 O -0.507 6.507 7 C 0.032 3.968 8 N -0.477 5.477 9 C 0.053 3.947 10 C -0.140 4.140 11 C -0.094 4.094 12 C 0.064 3.936 13 C -0.102 4.102 14 C 0.092 3.908 15 N -0.613 5.613 16 C 0.141 3.859 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.260 1.260 26 C 0.489 3.511 27 O -0.573 6.573 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.138 0.862 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.053 0.947 48 H 0.093 0.907 49 H -0.027 1.027 50 H 0.001 0.999 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -10.768 -15.989 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.286 6.286 5 C 0.317 3.683 6 O -0.395 6.395 7 C -0.096 4.096 8 N -0.201 5.201 9 C -0.075 4.075 10 C -0.178 4.178 11 C -0.132 4.132 12 C -0.029 4.029 13 C -0.139 4.139 14 C -0.030 4.030 15 N -0.344 5.344 16 C 0.020 3.980 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.791 3.209 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.184 1.184 26 C 0.276 3.724 27 O -0.454 6.454 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.156 0.844 45 H 0.126 0.874 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.111 0.889 49 H -0.009 1.009 50 H 0.019 0.981 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.127 -10.466 -16.517 19.669 hybrid contribution 0.906 1.687 1.110 2.213 sum -1.221 -8.779 -15.407 17.775 Atomic orbital electron populations 1.22199 0.93003 1.02582 1.04399 1.23097 0.95819 0.93858 0.85649 1.21938 1.01858 0.92151 1.04460 1.86618 1.77009 1.21946 1.42989 1.23305 0.73925 0.81430 0.89594 1.90583 1.48209 1.69993 1.30711 1.22150 1.03384 0.89823 0.94292 1.63752 1.46712 1.05166 1.04514 1.22909 0.92332 0.98757 0.93461 1.22899 0.97073 0.98585 0.99292 1.22603 0.97955 0.96258 0.96360 1.22320 0.95953 0.94325 0.90298 1.22661 0.96150 1.04226 0.90911 1.22579 0.91878 0.89601 0.98933 1.48760 1.44245 1.35435 1.05959 1.21390 0.96375 0.94934 0.85321 1.19188 0.94879 0.92618 0.94583 1.21504 1.10931 1.14181 1.11840 0.91573 1.25969 0.95099 0.97552 1.00861 1.70106 1.19458 1.25332 1.42134 0.85476 0.78217 0.78070 0.79154 1.19590 1.20885 1.18396 1.21740 0.81946 0.83487 0.85229 1.90597 1.37990 1.35071 1.81764 0.91611 0.87841 0.93331 0.90072 0.92271 0.87286 0.91647 0.88002 0.89391 0.88450 0.95144 0.87291 0.93243 0.89793 0.85629 0.90295 0.84412 0.87440 0.90139 0.92891 0.88887 1.00850 0.98079 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.55 71.98 0.69 -2.79 16 2 C 0.07 1.73 3.18 30.59 0.10 1.83 16 3 C -0.15 -2.91 9.57 71.98 0.69 -2.22 16 4 O -0.37 -12.26 9.88 -51.46 -0.51 -12.77 16 5 C 0.47 16.15 7.27 71.24 0.52 16.67 16 6 O -0.51 -17.24 13.79 21.97 0.30 -16.94 16 7 C 0.03 1.13 4.56 85.56 0.39 1.52 16 8 N -0.48 -13.91 4.77 -848.77 -4.05 -17.96 16 9 C 0.05 1.40 5.20 86.62 0.45 1.86 16 10 C -0.14 -3.04 6.85 31.87 0.22 -2.82 16 11 C -0.09 -1.78 5.97 31.69 0.19 -1.59 16 12 C 0.06 1.68 0.70 3.18 0.00 1.68 16 13 C -0.10 -2.07 6.47 31.44 0.20 -1.87 16 14 C 0.09 2.16 7.37 86.94 0.64 2.80 16 15 N -0.61 -21.34 2.94 -817.87 -2.41 -23.75 16 16 C 0.14 5.92 5.89 86.38 0.51 6.42 16 17 C 0.03 1.36 5.30 29.85 0.16 1.52 16 18 C -0.55 -31.14 9.11 25.60 0.23 -30.90 16 19 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -57.29 13.29 21.44 0.28 -57.00 16 22 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 C 0.49 17.73 5.58 87.52 0.49 18.21 16 27 O -0.57 -25.79 15.10 -3.04 -0.05 -25.84 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.08 2.03 7.16 -2.39 -0.02 2.01 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.09 3.67 5.14 -2.39 -0.01 3.66 16 37 H 0.10 2.40 8.06 -2.39 -0.02 2.38 16 38 H 0.03 0.94 6.70 -2.38 -0.02 0.93 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.08 1.56 8.00 -2.38 -0.02 1.54 16 42 H 0.13 1.52 7.78 -2.39 -0.02 1.50 16 43 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 44 H 0.14 1.62 7.63 -2.39 -0.02 1.60 16 45 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 48 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 49 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 50 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 51 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -77.26 405.20 2.44 -74.82 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.90 Total: 22.08 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.94 Total: 10.99 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -6.17 Total: -98.71 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.25 Total: -55.54 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -77.26 2.44 -74.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.533 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds