Wall clock time and date at job start Tue Mar 31 2020 22:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.45198 * 109.46767 * 240.00440 * 2 1 3 5 5 C 1.34230 * 116.99957 * 269.99890 * 4 2 1 6 6 O 1.20827 * 120.00039 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00315 * 180.02562 * 5 4 2 8 8 N 1.46898 * 109.47264 * 180.02562 * 7 5 4 9 9 C 1.47660 * 111.00117 * 69.87472 * 8 7 5 10 10 C 1.54521 * 107.05542 * 123.12358 * 9 8 7 11 11 C 1.54882 * 102.59233 * 22.99673 * 10 9 8 12 12 H 1.08992 * 110.41808 * 80.90016 * 11 10 9 13 13 C 1.48269 * 110.99791 * 190.43885 * 8 7 5 14 14 H 1.09004 * 111.35227 * 92.74727 * 13 8 7 15 15 C 1.53121 * 108.11791 * 329.41537 * 13 8 7 16 16 C 1.52882 * 109.33019 * 182.70011 * 15 13 8 17 17 C 1.50341 * 109.31140 * 52.85229 * 16 15 13 18 18 O 1.21281 * 118.80404 * 158.31423 * 17 16 15 19 19 N 1.33352 * 122.39813 * 338.33857 * 17 16 15 20 20 C 1.46498 * 117.28979 * 179.80382 * 19 17 16 21 21 C 1.53005 * 109.46868 * 269.97698 * 20 19 17 22 22 C 1.50700 * 109.46941 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00165 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99791 * 180.02562 * 22 21 20 25 25 N 1.31513 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99792 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47550 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47043 * 120.00148 * 26 24 22 29 29 H 1.48498 * 109.47314 * 240.00121 * 26 24 22 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.08998 * 109.46886 * 300.00519 * 7 5 4 38 38 H 1.09003 * 109.47151 * 59.99758 * 7 5 4 39 39 H 1.09001 * 109.91700 * 242.47397 * 9 8 7 40 40 H 1.08999 * 109.91602 * 3.56846 * 9 8 7 41 41 H 1.08996 * 110.78645 * 141.27098 * 10 9 8 42 42 H 1.08997 * 110.78332 * 264.53235 * 10 9 8 43 43 H 1.08998 * 109.49664 * 62.74320 * 15 13 8 44 44 H 1.08999 * 109.51508 * 302.67156 * 15 13 8 45 45 H 1.08999 * 109.50485 * 292.89799 * 16 15 13 46 46 H 1.09004 * 109.52747 * 172.81805 * 16 15 13 47 47 H 1.09000 * 109.47456 * 29.97686 * 20 19 17 48 48 H 1.08997 * 109.47010 * 149.97921 * 20 19 17 49 49 H 1.09000 * 109.47072 * 300.00223 * 21 20 19 50 50 H 1.08997 * 109.47123 * 60.00292 * 21 20 19 51 51 H 0.97003 * 119.99336 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2170 -2.0074 -1.0853 6 8 1.9982 -2.5748 -0.0412 7 6 2.7192 -2.7851 -2.2745 8 7 2.8573 -4.2015 -1.9105 9 6 1.5350 -4.8291 -1.7153 10 6 1.4586 -6.0343 -2.6793 11 6 2.9516 -6.3612 -2.9303 12 1 3.3557 -6.9497 -2.1067 13 6 3.5795 -4.9531 -2.9650 14 1 4.6499 -4.9913 -2.7627 15 6 3.2760 -4.2930 -4.3129 16 6 3.9538 -5.0874 -5.4294 17 6 3.5620 -6.5346 -5.3184 18 8 3.6554 -7.2422 -6.2990 19 7 3.1151 -7.0686 -4.1812 20 6 2.7608 -8.4900 -4.2002 21 6 1.2858 -8.6429 -4.5769 22 6 0.9212 -10.1050 -4.5959 23 1 1.6670 -10.8506 -4.3630 24 6 -0.3643 -10.4909 -4.9116 25 7 -1.2724 -9.5830 -5.1956 26 14 -0.8161 -12.3033 -4.9358 27 1 0.3758 -13.1154 -4.5820 28 1 -1.8976 -12.5570 -3.9504 29 1 -1.2857 -12.6783 -6.2937 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 2.0103 -2.6891 -3.0970 38 1 3.6883 -2.3925 -2.5825 39 1 1.4346 -5.1707 -0.6851 40 1 0.7464 -4.1134 -1.9475 41 1 0.9525 -6.8761 -2.2068 42 1 0.9592 -5.7562 -3.6074 43 1 3.6556 -3.2713 -4.3113 44 1 2.1986 -4.2805 -4.4778 45 1 5.0359 -4.9953 -5.3363 46 1 3.6376 -4.6981 -6.3973 47 1 3.3787 -9.0087 -4.9332 48 1 2.9302 -8.9199 -3.2130 49 1 0.6679 -8.1242 -3.8439 50 1 1.1165 -8.2131 -5.5641 51 1 -2.1766 -9.8545 -5.4181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274062038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:47 Heat of formation + Delta-G solvation = -112.430720 kcal Electronic energy + Delta-G solvation = -30817.894859 eV Core-core repulsion = 26717.368717 eV Total energy + Delta-G solvation = -4100.526142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27914 -40.49076 -38.56263 -36.94633 -35.32657 -33.71860 -33.51334 -32.84805 -31.53432 -29.36095 -28.34757 -27.68761 -26.99198 -25.08268 -23.65916 -22.85201 -21.96353 -21.14643 -20.72818 -20.17905 -18.04749 -18.00375 -16.90478 -16.56507 -16.54561 -16.36040 -15.93609 -15.53915 -15.00787 -14.81504 -14.47753 -14.42354 -14.17469 -13.83332 -13.76003 -13.39427 -13.20005 -12.84457 -12.70979 -12.65745 -12.57732 -12.41283 -12.36727 -12.08545 -11.84268 -11.79465 -11.61933 -11.35038 -11.29503 -11.19762 -10.94591 -10.88068 -10.83077 -10.68198 -10.56219 -10.46277 -9.82516 -9.81472 -9.33448 -9.00247 -8.59004 -8.33613 -8.06488 -6.00095 -4.02081 2.05729 2.26215 3.04655 3.32105 3.35650 3.40104 3.44467 3.79520 4.30745 4.34976 4.40785 4.47597 4.52060 4.58303 4.67465 4.72886 4.75760 4.88868 4.95373 5.06233 5.12713 5.22581 5.27323 5.27921 5.30957 5.36297 5.36898 5.38834 5.44489 5.62758 5.64003 5.66969 5.76339 5.77152 5.89054 5.98290 6.17479 6.24965 6.29054 6.31643 6.57145 6.60619 6.64074 6.85567 6.92970 7.63446 7.65971 7.75397 8.00985 8.05272 8.38659 8.65542 9.04654 9.61474 11.11394 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.002651 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.086904 B =10558.356347 C =11763.141383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.359 6.359 5 C 0.459 3.541 6 O -0.486 6.486 7 C 0.056 3.944 8 N -0.508 5.508 9 C 0.048 3.952 10 C -0.154 4.154 11 C 0.146 3.854 12 H 0.097 0.903 13 C 0.070 3.930 14 H 0.108 0.892 15 C -0.153 4.153 16 C -0.131 4.131 17 C 0.510 3.490 18 O -0.545 6.545 19 N -0.590 5.590 20 C 0.108 3.892 21 C 0.013 3.987 22 C -0.518 4.518 23 H 0.056 0.944 24 C 0.058 3.942 25 N -0.894 5.894 26 Si 0.893 3.107 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.019 0.981 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 22.954 9.740 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 C -0.206 4.206 4 O -0.276 6.276 5 C 0.300 3.700 6 O -0.371 6.371 7 C -0.073 4.073 8 N -0.233 5.233 9 C -0.080 4.080 10 C -0.193 4.193 11 C 0.040 3.960 12 H 0.115 0.885 13 C -0.038 4.038 14 H 0.126 0.874 15 C -0.191 4.191 16 C -0.172 4.172 17 C 0.297 3.703 18 O -0.423 6.423 19 N -0.320 5.320 20 C -0.013 4.013 21 C -0.024 4.024 22 C -0.556 4.556 23 H 0.074 0.926 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.721 3.279 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.040 0.960 50 H 0.037 0.963 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.580 22.474 10.015 26.058 hybrid contribution -1.067 -0.842 -0.584 1.479 sum 7.513 21.632 9.432 24.766 Atomic orbital electron populations 1.22214 0.94297 1.03225 1.03064 1.22709 0.94590 0.92955 0.87090 1.21889 1.02085 0.93515 1.03153 1.86544 1.77356 1.22409 1.41301 1.23630 0.74868 0.81125 0.90366 1.90670 1.46412 1.69736 1.30292 1.21825 1.03336 0.89489 0.92621 1.63584 1.18592 0.99444 1.41632 1.22947 0.88489 0.95480 1.01060 1.23374 0.96943 0.98722 1.00258 1.21533 0.95533 0.91819 0.87068 0.88480 1.22897 0.99466 0.92488 0.88914 0.87422 1.22344 1.02160 0.99938 0.94698 1.21577 1.02348 0.92568 1.00671 1.19971 0.77668 0.89831 0.82801 1.90742 1.54383 1.61885 1.35304 1.47108 1.63501 1.12622 1.08806 1.21966 1.00503 0.77723 1.01152 1.19420 0.88642 0.97061 0.97312 1.21148 0.95516 0.92106 1.46877 0.92558 1.24986 0.96570 0.97494 0.95264 1.69979 1.03228 1.32835 1.47287 0.86524 0.78408 0.85392 0.77605 1.19685 1.21062 1.21023 0.91520 0.91861 0.90724 0.89692 0.90415 0.91679 0.91371 0.89880 0.86485 0.89291 0.92883 0.89001 0.90424 0.90144 0.90631 0.88584 0.88299 0.90603 0.91956 0.96032 0.96258 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.55 37.16 0.35 -0.90 16 2 C 0.08 0.65 3.18 -26.73 -0.09 0.57 16 3 C -0.15 -0.82 9.57 37.16 0.36 -0.47 16 4 O -0.36 -3.45 9.88 -39.26 -0.39 -3.84 16 5 C 0.46 4.94 7.58 36.01 0.27 5.22 16 6 O -0.49 -6.62 14.77 -18.75 -0.28 -6.90 16 7 C 0.06 0.50 3.94 -4.97 -0.02 0.48 16 8 N -0.51 -5.53 4.85 -224.52 -1.09 -6.62 16 9 C 0.05 0.59 5.62 -2.61 -0.01 0.57 16 10 C -0.15 -2.22 4.67 -24.94 -0.12 -2.34 16 11 C 0.15 2.02 3.19 -67.30 -0.21 1.80 16 12 H 0.10 1.30 8.01 -51.93 -0.42 0.88 16 13 C 0.07 0.75 3.49 -66.26 -0.23 0.52 16 14 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.15 -1.50 3.87 -26.73 -0.10 -1.60 16 16 C -0.13 -1.56 6.08 -28.12 -0.17 -1.73 16 17 C 0.51 9.03 7.47 -11.79 -0.09 8.94 16 18 O -0.55 -12.33 16.20 5.56 0.09 -12.24 16 19 N -0.59 -10.21 2.51 -166.16 -0.42 -10.62 16 20 C 0.11 2.27 5.06 -4.04 -0.02 2.25 16 21 C 0.01 0.35 5.07 -27.88 -0.14 0.21 16 22 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 23 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 24 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 26 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.77 7.16 -51.93 -0.37 0.40 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.67 6.74 -51.93 -0.35 0.32 16 38 H 0.12 0.77 7.27 -51.93 -0.38 0.40 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.64 7.31 -51.93 -0.38 0.26 16 41 H 0.09 1.48 7.42 -51.93 -0.39 1.10 16 42 H 0.08 1.26 7.39 -51.93 -0.38 0.88 16 43 H 0.08 0.56 6.37 -51.93 -0.33 0.23 16 44 H 0.08 0.85 6.54 -51.93 -0.34 0.51 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 1.74 7.14 -51.93 -0.37 1.37 16 48 H 0.06 1.21 7.90 -51.93 -0.41 0.80 16 49 H 0.02 0.56 6.14 -51.93 -0.32 0.24 16 50 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -34.87 396.25 -9.65 -44.52 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.63 Total: -0.95 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.63 Total: 0.06 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.77 Total: -43.54 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.57 Total: -22.98 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.87 -9.65 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274062038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.910 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds