Wall clock time and date at job start Tue Mar 31 2020 22:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 O 1.45198 * 109.46767 * 240.00440 * 2 1 3 5 5 C 1.34230 * 116.99957 * 269.99890 * 4 2 1 6 6 O 1.20827 * 120.00039 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00315 * 180.02562 * 5 4 2 8 8 N 1.46898 * 109.47264 * 180.02562 * 7 5 4 9 9 C 1.47660 * 111.00117 * 69.87472 * 8 7 5 10 10 C 1.54521 * 107.05542 * 123.12358 * 9 8 7 11 11 C 1.54882 * 102.59233 * 22.99673 * 10 9 8 12 12 H 1.08992 * 110.41808 * 80.90016 * 11 10 9 13 13 C 1.48269 * 110.99791 * 190.43885 * 8 7 5 14 14 H 1.09004 * 111.35227 * 92.74727 * 13 8 7 15 15 C 1.53121 * 108.11791 * 329.41537 * 13 8 7 16 16 C 1.52882 * 109.33019 * 182.70011 * 15 13 8 17 17 C 1.50341 * 109.31140 * 52.85229 * 16 15 13 18 18 O 1.21281 * 118.80404 * 158.31423 * 17 16 15 19 19 N 1.33352 * 122.39813 * 338.33857 * 17 16 15 20 20 C 1.46498 * 117.28979 * 179.80382 * 19 17 16 21 21 C 1.53005 * 109.46868 * 269.97698 * 20 19 17 22 22 C 1.50700 * 109.46941 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00165 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99791 * 180.02562 * 22 21 20 25 25 N 1.31513 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99792 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47550 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47043 * 120.00148 * 26 24 22 29 29 H 1.48498 * 109.47314 * 240.00121 * 26 24 22 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.08998 * 109.46886 * 300.00519 * 7 5 4 38 38 H 1.09003 * 109.47151 * 59.99758 * 7 5 4 39 39 H 1.09001 * 109.91700 * 242.47397 * 9 8 7 40 40 H 1.08999 * 109.91602 * 3.56846 * 9 8 7 41 41 H 1.08996 * 110.78645 * 141.27098 * 10 9 8 42 42 H 1.08997 * 110.78332 * 264.53235 * 10 9 8 43 43 H 1.08998 * 109.49664 * 62.74320 * 15 13 8 44 44 H 1.08999 * 109.51508 * 302.67156 * 15 13 8 45 45 H 1.08999 * 109.50485 * 292.89799 * 16 15 13 46 46 H 1.09004 * 109.52747 * 172.81805 * 16 15 13 47 47 H 1.09000 * 109.47456 * 29.97686 * 20 19 17 48 48 H 1.08997 * 109.47010 * 149.97921 * 20 19 17 49 49 H 1.09000 * 109.47072 * 300.00223 * 21 20 19 50 50 H 1.08997 * 109.47123 * 60.00292 * 21 20 19 51 51 H 0.97003 * 119.99336 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2170 -2.0074 -1.0853 6 8 1.9982 -2.5748 -0.0412 7 6 2.7192 -2.7851 -2.2745 8 7 2.8573 -4.2015 -1.9105 9 6 1.5350 -4.8291 -1.7153 10 6 1.4586 -6.0343 -2.6793 11 6 2.9516 -6.3612 -2.9303 12 1 3.3557 -6.9497 -2.1067 13 6 3.5795 -4.9531 -2.9650 14 1 4.6499 -4.9913 -2.7627 15 6 3.2760 -4.2930 -4.3129 16 6 3.9538 -5.0874 -5.4294 17 6 3.5620 -6.5346 -5.3184 18 8 3.6554 -7.2422 -6.2990 19 7 3.1151 -7.0686 -4.1812 20 6 2.7608 -8.4900 -4.2002 21 6 1.2858 -8.6429 -4.5769 22 6 0.9212 -10.1050 -4.5959 23 1 1.6670 -10.8506 -4.3630 24 6 -0.3643 -10.4909 -4.9116 25 7 -1.2724 -9.5830 -5.1956 26 14 -0.8161 -12.3033 -4.9358 27 1 0.3758 -13.1154 -4.5820 28 1 -1.8976 -12.5570 -3.9504 29 1 -1.2857 -12.6783 -6.2937 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 2.0103 -2.6891 -3.0970 38 1 3.6883 -2.3925 -2.5825 39 1 1.4346 -5.1707 -0.6851 40 1 0.7464 -4.1134 -1.9475 41 1 0.9525 -6.8761 -2.2068 42 1 0.9592 -5.7562 -3.6074 43 1 3.6556 -3.2713 -4.3113 44 1 2.1986 -4.2805 -4.4778 45 1 5.0359 -4.9953 -5.3363 46 1 3.6376 -4.6981 -6.3973 47 1 3.3787 -9.0087 -4.9332 48 1 2.9302 -8.9199 -3.2130 49 1 0.6679 -8.1242 -3.8439 50 1 1.1165 -8.2131 -5.5641 51 1 -2.1766 -9.8545 -5.4181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274062038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:46 Heat of formation + Delta-G solvation = -135.549778 kcal Electronic energy + Delta-G solvation = -30818.897377 eV Core-core repulsion = 26717.368717 eV Total energy + Delta-G solvation = -4101.528660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33394 -41.41904 -39.77107 -37.79929 -36.82290 -35.27640 -34.39216 -34.14949 -32.76829 -31.15082 -29.37572 -28.19141 -27.93510 -26.94683 -24.85162 -23.67359 -23.50620 -22.32673 -21.85240 -21.09322 -19.21791 -18.81146 -18.55437 -17.99733 -17.62493 -17.33523 -16.95557 -16.80039 -16.57854 -16.06559 -15.83692 -15.30353 -15.11179 -14.82057 -14.72227 -14.65631 -14.32223 -14.25104 -13.89022 -13.78679 -13.59922 -13.37823 -13.16269 -13.14819 -13.07850 -12.90491 -12.81432 -12.67674 -12.57860 -12.47806 -12.32556 -12.01015 -11.88701 -11.83931 -11.74382 -11.61704 -11.52979 -11.36593 -11.29264 -10.59757 -10.55103 -9.64027 -9.44546 -8.24055 -6.35192 1.26682 1.36584 1.37847 1.50805 1.54051 1.67157 2.09025 2.39470 2.86060 3.09605 3.34132 3.43635 3.66684 3.77112 3.79016 3.84407 3.96876 4.03994 4.11448 4.15741 4.18032 4.23071 4.32142 4.37215 4.39720 4.43879 4.67624 4.68769 4.72617 4.77222 4.77533 4.85076 4.86774 4.87549 4.90044 4.94906 5.00468 5.10339 5.15378 5.24514 5.25759 5.31935 5.47665 5.56453 5.61338 5.69681 5.77414 5.82370 6.18027 6.62595 6.80338 6.85533 7.25082 7.33690 8.88055 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.002651 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.086904 B =10558.356347 C =11763.141383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 C -0.144 4.144 4 O -0.358 6.358 5 C 0.459 3.541 6 O -0.522 6.522 7 C 0.054 3.946 8 N -0.510 5.510 9 C 0.062 3.938 10 C -0.150 4.150 11 C 0.138 3.862 12 H 0.105 0.895 13 C 0.084 3.916 14 H 0.137 0.863 15 C -0.148 4.148 16 C -0.118 4.118 17 C 0.497 3.503 18 O -0.605 6.605 19 N -0.587 5.587 20 C 0.122 3.878 21 C 0.028 3.972 22 C -0.542 4.542 23 H 0.061 0.939 24 C 0.001 3.999 25 N -0.932 5.932 26 Si 0.967 3.033 27 H -0.261 1.261 28 H -0.274 1.274 29 H -0.281 1.281 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.154 0.846 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.128 0.872 44 H 0.058 0.942 45 H 0.131 0.869 46 H 0.105 0.895 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.011 0.989 50 H -0.029 1.029 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 24.933 10.527 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 C -0.200 4.200 4 O -0.275 6.275 5 C 0.302 3.698 6 O -0.410 6.410 7 C -0.075 4.075 8 N -0.234 5.234 9 C -0.066 4.066 10 C -0.189 4.189 11 C 0.033 3.967 12 H 0.123 0.877 13 C -0.024 4.024 14 H 0.154 0.846 15 C -0.186 4.186 16 C -0.158 4.158 17 C 0.287 3.713 18 O -0.487 6.487 19 N -0.316 5.316 20 C -0.001 4.001 21 C -0.010 4.010 22 C -0.580 4.580 23 H 0.080 0.920 24 C -0.197 4.197 25 N -0.572 5.572 26 Si 0.791 3.209 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.207 1.207 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.172 0.828 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.077 0.923 45 H 0.149 0.851 46 H 0.123 0.877 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.029 0.971 50 H -0.011 1.011 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.237 24.502 10.830 28.678 hybrid contribution -1.634 -1.410 -0.814 2.307 sum 8.602 23.091 10.016 26.599 Atomic orbital electron populations 1.22214 0.93968 1.02097 1.04299 1.22934 0.94982 0.94109 0.86100 1.21892 1.02194 0.91682 1.04279 1.86543 1.77093 1.21901 1.41956 1.24024 0.73985 0.81409 0.90360 1.90666 1.48124 1.70403 1.31808 1.22038 1.05619 0.87794 0.92026 1.63592 1.17223 1.00640 1.41967 1.22718 0.89815 0.94457 0.99571 1.23216 0.97293 0.98936 0.99491 1.21807 0.95317 0.94080 0.85462 0.87735 1.22926 1.00410 0.89665 0.89391 0.84567 1.22393 1.01207 1.01910 0.93083 1.21597 1.04560 0.87777 1.01866 1.21219 0.76271 0.92167 0.81600 1.90710 1.56866 1.63917 1.37235 1.47105 1.62892 1.11214 1.10387 1.21493 0.96738 0.80708 1.01194 1.19200 0.91861 0.95729 0.94223 1.21598 0.96049 0.93373 1.46999 0.92049 1.25968 0.96473 1.02679 0.94604 1.70114 1.03719 1.35332 1.48011 0.85373 0.78539 0.79209 0.77775 1.18445 1.19937 1.20705 0.90860 0.94102 0.88958 0.91083 0.88685 0.91486 0.90842 0.88486 0.82814 0.90291 0.92787 0.91687 0.92740 0.85426 0.92341 0.85070 0.87711 0.92709 0.90091 0.97056 1.01105 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.55 71.98 0.69 -1.61 16 2 C 0.07 1.07 3.18 30.60 0.10 1.17 16 3 C -0.14 -1.24 9.57 71.98 0.69 -0.55 16 4 O -0.36 -6.16 9.88 -51.41 -0.51 -6.66 16 5 C 0.46 9.02 7.58 71.24 0.54 9.56 16 6 O -0.52 -13.85 14.77 21.96 0.32 -13.53 16 7 C 0.05 0.76 3.94 85.56 0.34 1.10 16 8 N -0.51 -9.82 4.85 -864.24 -4.19 -14.01 16 9 C 0.06 1.53 5.62 86.67 0.49 2.01 16 10 C -0.15 -4.52 4.67 31.75 0.15 -4.37 16 11 C 0.14 3.73 3.19 46.39 0.15 3.88 16 12 H 0.10 2.70 8.01 -2.39 -0.02 2.68 16 13 C 0.08 1.51 3.49 45.10 0.16 1.67 16 14 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.15 -2.35 3.87 30.60 0.12 -2.24 16 16 C -0.12 -2.48 6.08 29.70 0.18 -2.30 16 17 C 0.50 17.68 7.47 87.77 0.66 18.34 16 18 O -0.61 -28.48 16.20 -3.03 -0.05 -28.53 16 19 N -0.59 -20.67 2.51 -798.79 -2.00 -22.67 16 20 C 0.12 5.36 5.06 86.38 0.44 5.80 16 21 C 0.03 1.53 5.07 29.85 0.15 1.68 16 22 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 23 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 24 C 0.00 0.04 5.46 84.66 0.46 0.50 16 25 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 26 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 29 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.25 7.16 -2.39 -0.02 1.23 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 1.21 6.74 -2.39 -0.02 1.19 16 38 H 0.15 1.13 7.27 -2.39 -0.02 1.11 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.30 7.31 -2.39 -0.02 1.28 16 41 H 0.06 2.27 7.42 -2.39 -0.02 2.25 16 42 H 0.05 1.88 7.39 -2.39 -0.02 1.86 16 43 H 0.13 0.96 6.37 -2.39 -0.02 0.94 16 44 H 0.06 1.18 6.54 -2.39 -0.02 1.17 16 45 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.05 2.64 7.14 -2.39 -0.02 2.62 16 48 H 0.08 3.22 7.90 -2.39 -0.02 3.20 16 49 H 0.01 0.63 6.14 -2.39 -0.01 0.61 16 50 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 51 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -81.87 396.25 2.32 -79.54 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.91 Total: 13.22 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.53 Total: 2.94 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -5.91 Total: -94.68 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -0.23 Total: -48.73 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -81.87 2.32 -79.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274062038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.007 kcal (2) G-P(sol) polarization free energy of solvation -81.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds