Wall clock time and date at job start Tue Mar 31 2020 22:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 O 1.45203 * 109.47052 * 179.97438 * 3 2 1 5 5 C 1.34638 * 117.00008 * 180.02562 * 4 3 2 6 6 O 1.21510 * 119.99797 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99976 * 180.02562 * 5 4 3 8 8 C 1.46928 * 120.60249 * 179.97438 * 7 5 4 9 9 C 1.53261 * 108.73992 * 234.12339 * 8 7 5 10 10 C 1.52506 * 109.42409 * 306.20327 * 9 8 7 11 11 C 1.54205 * 109.96499 * 181.76745 * 10 9 8 12 12 C 1.54574 * 101.66346 * 143.24632 * 11 10 9 13 13 N 1.46817 * 105.48870 * 334.96213 * 12 11 10 14 14 C 1.46500 * 124.36211 * 196.90174 * 13 12 11 15 15 C 1.53006 * 109.46998 * 89.99797 * 14 13 12 16 16 C 1.50699 * 109.46866 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00305 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46901 * 89.99815 * 20 18 16 22 22 H 1.48488 * 109.47487 * 210.00255 * 20 18 16 23 23 H 1.48503 * 109.47026 * 330.00635 * 20 18 16 24 24 C 1.34565 * 111.27675 * 17.16565 * 13 12 11 25 25 O 1.21284 * 125.02159 * 179.08718 * 24 13 12 26 26 C 1.52504 * 110.83248 * 59.97195 * 10 9 8 27 27 C 1.46934 * 120.60214 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.46544 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46871 * 300.00013 * 1 2 3 31 31 H 1.09003 * 109.46871 * 239.99987 * 2 1 3 32 32 H 1.09005 * 109.47129 * 120.00551 * 2 1 3 33 33 H 1.09003 * 109.47190 * 60.00182 * 3 2 1 34 34 H 1.08994 * 109.47095 * 300.00201 * 3 2 1 35 35 H 1.09006 * 109.58961 * 114.34538 * 8 7 5 36 36 H 1.08994 * 109.71316 * 353.97537 * 8 7 5 37 37 H 1.08996 * 109.48490 * 186.22247 * 9 8 7 38 38 H 1.09003 * 109.47919 * 66.18458 * 9 8 7 39 39 H 1.08994 * 110.99011 * 25.15122 * 11 10 9 40 40 H 1.09006 * 110.98845 * 261.33498 * 11 10 9 41 41 H 1.09001 * 110.24224 * 215.96439 * 12 11 10 42 42 H 1.08997 * 110.32066 * 94.00455 * 12 11 10 43 43 H 1.09000 * 109.47175 * 329.99929 * 14 13 12 44 44 H 1.09001 * 109.47297 * 209.99436 * 14 13 12 45 45 H 1.08993 * 109.46955 * 300.00226 * 15 14 13 46 46 H 1.09000 * 109.47050 * 60.00054 * 15 14 13 47 47 H 0.97002 * 120.00008 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.48485 * 60.00324 * 26 10 9 49 49 H 1.09002 * 109.48254 * 180.02562 * 26 10 9 50 50 H 1.09006 * 109.59295 * 245.64313 * 27 7 5 51 51 H 1.09001 * 109.59524 * 5.94262 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4424 0.0006 5 6 4.1034 2.6420 0.0012 6 8 3.4416 3.6611 0.0008 7 7 5.4493 2.7125 0.0013 8 6 6.1301 4.0145 0.0014 9 6 7.1121 4.0568 -1.1746 10 6 8.0393 2.8480 -1.1048 11 6 9.0618 2.9014 -2.2578 12 6 10.3311 2.3416 -1.5761 13 7 10.1587 2.6126 -0.1435 14 6 11.2438 2.5823 0.8402 15 6 11.8734 3.9727 0.9479 16 6 12.9901 3.9414 1.9594 17 1 13.2268 3.0220 2.4742 18 6 13.7089 5.0868 2.2284 19 7 14.6831 5.0596 3.1114 20 14 13.2991 6.6773 1.3385 21 1 12.2822 7.4310 2.1149 22 1 14.5281 7.4996 1.2030 23 1 12.7610 6.3654 -0.0101 24 6 8.8745 2.8867 0.1505 25 8 8.4514 3.1310 1.2606 26 6 7.2432 1.5491 -1.1745 27 6 6.2624 1.4886 0.0013 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.6746 4.1422 0.9371 36 1 5.3962 4.8131 -0.1063 37 1 7.7027 4.9713 -1.1223 38 1 6.5571 4.0354 -2.1125 39 1 9.2187 3.9265 -2.5933 40 1 8.7502 2.2646 -3.0858 41 1 11.2176 2.8521 -1.9524 42 1 10.4121 1.2686 -1.7499 43 1 12.0006 1.8643 0.5244 44 1 10.8459 2.2875 1.8112 45 1 12.2713 4.2676 -0.0230 46 1 11.1166 4.6908 1.2638 47 1 15.1891 5.8654 3.3004 48 1 6.6889 1.5123 -2.1123 49 1 7.9260 0.7010 -1.1225 50 1 6.8174 1.4185 0.9368 51 1 5.6140 0.6190 -0.1051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274336248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:20 Heat of formation + Delta-G solvation = -124.021222 kcal Electronic energy + Delta-G solvation = -30632.276602 eV Core-core repulsion = 26531.247858 eV Total energy + Delta-G solvation = -4101.028744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36991 -40.33817 -37.74904 -36.46174 -36.22657 -34.42461 -34.07068 -32.77659 -31.39892 -30.82349 -28.89307 -27.22029 -26.03884 -25.09295 -23.71213 -22.83949 -21.89683 -21.69379 -20.87353 -20.18317 -18.69942 -18.03032 -17.20499 -17.01094 -16.92761 -16.09569 -15.64661 -15.33418 -15.09815 -14.98264 -14.42169 -14.34923 -14.22315 -14.10001 -13.67057 -13.40314 -13.19791 -12.98714 -12.82795 -12.79311 -12.67203 -12.61675 -12.44145 -12.31971 -12.05009 -11.77458 -11.54990 -11.52333 -11.46098 -11.41102 -11.02744 -10.84029 -10.70469 -10.63753 -10.51586 -10.44321 -10.15677 -9.86741 -9.42785 -9.25583 -8.66623 -8.58551 -8.22256 -6.09546 -4.08823 1.99150 2.72546 2.83815 3.28838 3.35796 3.37969 3.38086 3.65773 4.17331 4.30770 4.41115 4.44927 4.50670 4.51495 4.76228 4.83692 4.86892 4.89504 5.05823 5.07918 5.13066 5.20221 5.22029 5.24696 5.31013 5.38330 5.49415 5.52833 5.57506 5.59149 5.64761 5.67280 5.71699 5.74074 5.78221 5.85365 5.90559 5.93762 6.12583 6.21509 6.26916 6.35363 6.55168 6.76374 7.13806 7.25654 7.27795 7.58024 7.71418 8.18031 8.43330 8.51647 8.93285 9.52229 11.03458 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.002402 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.520423 B =11653.029022 C =11869.970180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.086 3.914 4 O -0.371 6.371 5 C 0.650 3.350 6 O -0.579 6.579 7 N -0.583 5.583 8 C 0.117 3.883 9 C -0.110 4.110 10 C -0.096 4.096 11 C -0.125 4.125 12 C 0.100 3.900 13 N -0.612 5.612 14 C 0.136 3.864 15 C -0.023 4.023 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.521 3.479 25 O -0.523 6.523 26 C -0.110 4.110 27 C 0.109 3.891 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.264 0.736 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 -10.887 -14.167 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.011 3.989 4 O -0.285 6.285 5 C 0.404 3.596 6 O -0.468 6.468 7 N -0.322 5.322 8 C -0.004 4.004 9 C -0.149 4.149 10 C -0.100 4.100 11 C -0.163 4.163 12 C -0.024 4.024 13 N -0.345 5.345 14 C 0.016 3.984 15 C -0.062 4.062 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.192 1.192 24 C 0.308 3.692 25 O -0.399 6.399 26 C -0.149 4.149 27 C -0.014 4.014 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.000 -10.382 -13.418 28.581 hybrid contribution 0.098 0.984 -0.461 1.091 sum -22.902 -9.399 -13.880 28.381 Atomic orbital electron populations 1.21682 0.94049 1.02540 1.02408 1.21532 0.96136 0.94785 1.03749 1.23021 0.74919 0.98226 1.02734 1.86201 1.23796 1.31364 1.87168 1.17973 0.83182 0.81935 0.76495 1.90970 1.64253 1.34950 1.56662 1.46832 1.01502 1.08753 1.75161 1.21931 0.94963 0.82927 1.00583 1.21750 0.96806 0.97105 0.99218 1.21061 0.95846 0.97552 0.95514 1.22712 0.93755 1.02964 0.96838 1.22071 0.98850 1.00408 0.81059 1.48627 1.08679 1.68368 1.08823 1.21595 0.86459 1.00103 0.90238 1.19880 0.96189 0.92704 0.97380 1.20951 1.14742 0.98035 1.22316 0.90816 1.24978 0.94626 0.98855 0.94730 1.69904 1.21477 1.28971 1.33493 0.86763 0.77853 0.83726 0.80827 1.20189 1.21328 1.19213 1.20407 0.82881 0.76420 0.89538 1.90661 1.75368 1.49031 1.24879 1.21739 0.97650 0.96062 0.99404 1.21786 0.93714 0.86360 0.99509 0.92293 0.91631 0.92232 0.90810 0.90723 0.91248 0.91308 0.88079 0.88902 0.89838 0.90660 0.89763 0.89290 0.90122 0.91340 0.90996 0.90488 0.96545 0.96599 0.92621 0.90352 0.89988 0.90035 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.80 6.31 -26.73 -0.17 -0.97 16 3 C 0.09 0.79 5.47 37.16 0.20 0.99 16 4 O -0.37 -4.35 8.85 -40.32 -0.36 -4.70 16 5 C 0.65 9.10 8.43 54.05 0.46 9.55 16 6 O -0.58 -9.58 15.54 -19.28 -0.30 -9.88 16 7 N -0.58 -7.58 2.96 -178.48 -0.53 -8.11 16 8 C 0.12 1.56 6.00 -3.67 -0.02 1.54 16 9 C -0.11 -1.24 4.80 -26.85 -0.13 -1.37 16 10 C -0.10 -1.08 0.55 -155.48 -0.09 -1.17 16 11 C -0.12 -1.14 6.20 -25.27 -0.16 -1.30 16 12 C 0.10 1.13 7.35 -3.04 -0.02 1.10 16 13 N -0.61 -9.72 2.94 -172.46 -0.51 -10.23 16 14 C 0.14 2.64 5.88 -4.04 -0.02 2.62 16 15 C -0.02 -0.55 4.37 -27.88 -0.12 -0.67 16 16 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 17 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 20 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 24 C 0.52 8.29 6.24 -11.02 -0.07 8.22 16 25 O -0.52 -10.16 13.72 5.55 0.08 -10.09 16 26 C -0.11 -1.03 4.77 -26.86 -0.13 -1.16 16 27 C 0.11 1.22 6.03 -3.68 -0.02 1.19 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.60 5.87 -51.93 -0.30 1.29 16 36 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 37 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 40 H 0.09 0.58 7.87 -51.93 -0.41 0.17 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.61 7.92 -51.93 -0.41 1.20 16 45 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 46 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 1.08 6.82 -51.93 -0.35 0.72 16 51 H 0.09 0.89 6.92 -51.93 -0.36 0.53 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -34.71 398.96 -8.73 -43.44 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.88 Total: -1.92 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.35 Total: 5.11 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.26 Total: -45.18 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.58 Total: -24.67 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.71 -8.73 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274336248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.582 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds