Wall clock time and date at job start Tue Mar 31 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47243 * 2 1 4 4 O 1.42892 * 109.47633 * 120.00272 * 2 1 3 5 5 C 1.42900 * 114.00460 * 149.99964 * 4 2 1 6 6 H 1.08994 * 110.78205 * 328.21343 * 5 4 2 7 7 C 1.55159 * 110.71818 * 204.97565 * 5 4 2 8 8 C 1.55132 * 101.48210 * 205.96883 * 7 5 4 9 9 N 1.47424 * 104.72344 * 37.30042 * 8 7 5 10 10 C 1.34775 * 125.64767 * 155.81963 * 9 8 7 11 11 O 1.21352 * 119.99676 * 179.69042 * 10 9 8 12 12 C 1.49446 * 119.99866 * 359.68593 * 10 9 8 13 13 O 1.21343 * 120.00523 * 6.89241 * 12 10 9 14 14 N 1.34784 * 119.99719 * 186.89114 * 12 10 9 15 15 C 1.46921 * 120.63213 * 357.50151 * 14 12 10 16 16 C 1.53194 * 108.77989 * 126.36448 * 15 14 12 17 17 C 1.53039 * 109.31136 * 54.63355 * 16 15 14 18 18 C 1.53044 * 109.54060 * 298.63843 * 17 16 15 19 19 H 1.08997 * 109.49627 * 301.38246 * 18 17 16 20 20 C 1.50695 * 109.49911 * 181.31500 * 18 17 16 21 21 H 1.08002 * 119.99919 * 359.97438 * 20 18 17 22 22 C 1.37872 * 120.00058 * 179.97438 * 20 18 17 23 23 N 1.31519 * 120.00189 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00342 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46920 * 89.99634 * 24 22 20 26 26 H 1.48497 * 109.47497 * 209.99911 * 24 22 20 27 27 H 1.48501 * 109.46863 * 330.00061 * 24 22 20 28 28 C 1.46928 * 120.63003 * 177.47051 * 14 12 10 29 29 C 1.47022 * 108.70136 * 335.54992 * 9 8 7 30 30 H 1.08994 * 109.46720 * 299.99868 * 1 2 3 31 31 H 1.08997 * 109.46753 * 59.99956 * 1 2 3 32 32 H 1.09005 * 109.46703 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47051 * 240.00641 * 2 1 3 34 34 H 1.08997 * 109.47785 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47154 * 300.00213 * 3 2 1 36 36 H 1.08999 * 109.47014 * 59.99931 * 3 2 1 37 37 H 1.08998 * 111.00865 * 324.20873 * 7 5 4 38 38 H 1.09001 * 111.00102 * 88.02704 * 7 5 4 39 39 H 1.08997 * 110.49674 * 278.45165 * 8 7 5 40 40 H 1.09001 * 110.34378 * 156.06487 * 8 7 5 41 41 H 1.09001 * 109.58528 * 6.57800 * 15 14 12 42 42 H 1.08997 * 109.59013 * 246.15368 * 15 14 12 43 43 H 1.08998 * 109.49880 * 174.58613 * 16 15 14 44 44 H 1.09005 * 109.49629 * 294.65423 * 16 15 14 45 45 H 1.09004 * 109.45527 * 58.65473 * 17 16 15 46 46 H 1.08991 * 109.46363 * 178.62821 * 17 16 15 47 47 H 0.96996 * 120.00272 * 179.97438 * 23 22 20 48 48 H 1.09008 * 109.58066 * 113.84695 * 28 14 12 49 49 H 1.09000 * 109.70280 * 353.49387 * 28 14 12 50 50 H 1.09002 * 109.88200 * 120.70693 * 29 9 8 51 51 H 1.09005 * 109.88065 * 241.87240 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 3.2661 -1.3245 0.9885 6 1 3.3778 -1.6766 -0.0370 7 6 3.4248 -2.4972 1.9919 8 6 4.9683 -2.5905 2.1161 9 7 5.4329 -1.1921 2.0737 10 6 6.5911 -0.7332 2.5879 11 8 6.8749 0.4426 2.4896 12 6 7.5258 -1.6723 3.2792 13 8 7.3046 -2.8654 3.2693 14 7 8.6145 -1.1941 3.9138 15 6 8.9253 0.2416 3.8885 16 6 9.0964 0.7347 5.3288 17 6 10.1477 -0.1237 6.0360 18 6 9.6772 -1.5794 6.0764 19 1 8.7216 -1.6385 6.5973 20 6 10.6980 -2.4181 6.8013 21 1 11.5934 -1.9592 7.1938 22 6 10.4889 -3.7712 6.9634 23 7 9.3983 -4.3299 6.4859 24 14 11.7546 -4.8110 7.8614 25 1 11.4331 -4.8397 9.3109 26 1 11.7317 -6.1942 7.3217 27 1 13.1051 -4.2254 7.6655 28 6 9.5126 -2.0986 4.6445 29 6 4.4265 -0.3821 1.3718 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9662 -2.2558 2.9508 38 1 3.0104 -3.4191 1.5841 39 1 5.3850 -3.1543 1.2815 40 1 5.2450 -3.0536 3.0633 41 1 8.1090 0.7839 3.4112 42 1 9.8492 0.4058 3.3339 43 1 9.4214 1.7750 5.3210 44 1 8.1458 0.6543 5.8561 45 1 11.0913 -0.0620 5.4938 46 1 10.2891 0.2404 7.0535 47 1 9.2513 -5.2819 6.5996 48 1 10.4845 -2.1253 4.1515 49 1 9.0862 -3.1015 4.6662 50 1 4.0616 0.4071 2.0292 51 1 4.8626 0.0536 0.4728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330448511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:25 Heat of formation + Delta-G solvation = -97.842695 kcal Electronic energy + Delta-G solvation = -30727.622669 eV Core-core repulsion = 26627.729111 eV Total energy + Delta-G solvation = -4099.893558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73082 -39.41396 -38.15138 -37.15915 -36.49428 -33.36560 -33.02258 -31.73694 -30.80080 -29.75223 -29.03091 -27.45564 -26.00221 -25.03295 -23.85493 -22.13870 -21.75221 -21.62464 -21.19721 -19.63884 -18.59334 -17.40030 -17.10968 -16.67031 -16.21558 -15.88838 -15.63938 -15.36498 -14.97811 -14.56799 -14.33874 -14.02880 -13.78988 -13.74633 -13.45732 -13.35360 -13.06513 -12.90296 -12.67734 -12.64294 -12.52436 -12.46856 -12.15733 -12.10155 -11.90935 -11.79981 -11.48597 -11.35773 -11.10174 -10.98186 -10.88776 -10.65922 -10.44085 -10.25828 -10.04956 -9.96275 -9.78189 -9.18848 -9.11167 -8.82580 -8.48938 -8.39779 -7.81202 -6.02174 -4.10220 1.80633 2.47730 3.26455 3.30486 3.37261 3.39898 3.65221 3.82211 4.22844 4.34848 4.41658 4.53148 4.64166 4.69103 4.73061 4.82371 5.02082 5.14769 5.23791 5.28337 5.31588 5.40197 5.44677 5.49082 5.61664 5.65047 5.66252 5.70162 5.79334 5.81900 5.87327 5.94887 5.96004 6.10332 6.25773 6.38995 6.50709 6.61676 6.72138 6.87517 6.92745 6.99681 7.07426 7.17831 7.27113 7.59000 7.81827 7.93445 7.96415 8.17069 8.35596 8.59417 8.93777 9.55252 11.03429 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.002556 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.660859 B =10952.669896 C =11924.573462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.179 4.179 4 O -0.364 6.364 5 C 0.078 3.922 6 H 0.081 0.919 7 C -0.131 4.131 8 C 0.100 3.900 9 N -0.591 5.591 10 C 0.525 3.475 11 O -0.517 6.517 12 C 0.498 3.502 13 O -0.520 6.520 14 N -0.565 5.565 15 C 0.048 3.952 16 C -0.130 4.130 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.029 0.971 20 C -0.518 4.518 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.108 3.892 29 C 0.084 3.916 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.146 0.854 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.263 0.737 48 H 0.048 0.952 49 H 0.124 0.876 50 H 0.082 0.918 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 7.986 -14.714 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.237 4.237 4 O -0.283 6.283 5 C 0.019 3.981 6 H 0.099 0.901 7 C -0.169 4.169 8 C -0.022 4.022 9 N -0.326 5.326 10 C 0.311 3.689 11 O -0.395 6.395 12 C 0.279 3.721 13 O -0.398 6.398 14 N -0.297 5.297 15 C -0.074 4.074 16 C -0.169 4.169 17 C -0.151 4.151 18 C 0.022 3.978 19 H 0.047 0.953 20 C -0.557 4.557 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.520 5.520 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.011 4.011 29 C -0.039 4.039 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.142 0.858 50 H 0.101 0.899 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.529 7.813 -14.572 22.683 hybrid contribution 0.969 -0.488 0.288 1.122 sum -14.560 7.325 -14.284 21.672 Atomic orbital electron populations 1.21863 0.93476 1.02755 1.02601 1.22228 0.95125 0.92730 0.87911 1.22398 1.01894 0.96661 1.02716 1.88009 1.34931 1.69580 1.35737 1.23210 0.83212 0.92138 0.99538 0.90130 1.23027 0.95774 0.97606 1.00486 1.22708 0.92023 0.82055 1.05415 1.48187 1.18366 1.10971 1.55028 1.20559 0.81203 0.88186 0.78949 1.90273 1.73252 1.17925 1.58018 1.19609 0.82909 0.87993 0.81624 1.90716 1.73271 1.15397 1.60376 1.48447 1.23373 1.09744 1.48140 1.23159 1.04692 0.81333 0.98190 1.21909 1.00263 0.98749 0.95940 1.21664 0.97001 0.97578 0.98833 1.18969 0.97326 0.89971 0.91579 0.95267 1.21091 1.05849 0.92857 1.35901 0.92261 1.25059 0.95464 0.98115 0.95442 1.69875 1.25323 1.11820 1.44992 0.86570 0.81794 0.79630 0.79880 1.20669 1.21167 1.19902 1.22485 0.90544 0.95898 0.92200 1.22597 0.88815 0.95064 0.97407 0.91691 0.91259 0.91939 0.92036 0.92149 0.91660 0.91606 0.89262 0.89023 0.90456 0.87254 0.83834 0.92444 0.92225 0.92491 0.93218 0.93096 0.92649 0.93383 0.85808 0.89944 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.56 37.16 0.36 -0.56 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.18 -1.25 9.37 37.16 0.35 -0.90 16 4 O -0.36 -3.52 9.73 -35.23 -0.34 -3.86 16 5 C 0.08 0.72 3.39 -24.89 -0.08 0.63 16 6 H 0.08 0.60 7.48 -51.93 -0.39 0.21 16 7 C -0.13 -1.27 6.82 -24.46 -0.17 -1.44 16 8 C 0.10 1.27 5.98 -2.41 -0.01 1.25 16 9 N -0.59 -8.50 3.32 -170.88 -0.57 -9.07 16 10 C 0.53 9.23 7.83 -11.59 -0.09 9.14 16 11 O -0.52 -9.34 13.35 5.50 0.07 -9.26 16 12 C 0.50 10.24 7.71 -11.58 -0.09 10.15 16 13 O -0.52 -11.63 13.31 5.50 0.07 -11.56 16 14 N -0.57 -12.03 2.97 -173.27 -0.52 -12.54 16 15 C 0.05 0.88 6.24 -3.71 -0.02 0.86 16 16 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 17 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 18 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.88 -25.33 11.40 55.43 0.63 -24.70 16 24 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.11 2.65 5.39 -3.71 -0.02 2.63 16 29 C 0.08 0.96 5.43 -3.06 -0.02 0.95 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 7.43 -51.92 -0.39 -0.01 16 34 H 0.06 0.46 6.81 -51.93 -0.35 0.10 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.11 1.66 6.34 -51.93 -0.33 1.34 16 41 H 0.15 2.61 3.76 -57.05 -0.21 2.40 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 49 H 0.12 3.43 5.15 -51.93 -0.27 3.17 16 50 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 51 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -30.64 394.40 -9.16 -39.80 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.65 Total: 2.91 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.78 Total: 6.21 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.45 Total: -46.32 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.20 Total: -24.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.64 -9.16 -39.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.041 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds