Wall clock time and date at job start Tue Mar 31 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47243 * 2 1 4 4 O 1.42892 * 109.47633 * 120.00272 * 2 1 3 5 5 C 1.42900 * 114.00460 * 149.99964 * 4 2 1 6 6 H 1.08994 * 110.78205 * 328.21343 * 5 4 2 7 7 C 1.55159 * 110.71818 * 204.97565 * 5 4 2 8 8 C 1.55132 * 101.48210 * 205.96883 * 7 5 4 9 9 N 1.47424 * 104.72344 * 37.30042 * 8 7 5 10 10 C 1.34775 * 125.64767 * 155.81963 * 9 8 7 11 11 O 1.21352 * 119.99676 * 179.69042 * 10 9 8 12 12 C 1.49446 * 119.99866 * 359.68593 * 10 9 8 13 13 O 1.21343 * 120.00523 * 6.89241 * 12 10 9 14 14 N 1.34784 * 119.99719 * 186.89114 * 12 10 9 15 15 C 1.46921 * 120.63213 * 357.50151 * 14 12 10 16 16 C 1.53194 * 108.77989 * 126.36448 * 15 14 12 17 17 C 1.53039 * 109.31136 * 54.63355 * 16 15 14 18 18 C 1.53044 * 109.54060 * 298.63843 * 17 16 15 19 19 H 1.08997 * 109.49627 * 301.38246 * 18 17 16 20 20 C 1.50695 * 109.49911 * 181.31500 * 18 17 16 21 21 H 1.08002 * 119.99919 * 359.97438 * 20 18 17 22 22 C 1.37872 * 120.00058 * 179.97438 * 20 18 17 23 23 N 1.31519 * 120.00189 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00342 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46920 * 89.99634 * 24 22 20 26 26 H 1.48497 * 109.47497 * 209.99911 * 24 22 20 27 27 H 1.48501 * 109.46863 * 330.00061 * 24 22 20 28 28 C 1.46928 * 120.63003 * 177.47051 * 14 12 10 29 29 C 1.47022 * 108.70136 * 335.54992 * 9 8 7 30 30 H 1.08994 * 109.46720 * 299.99868 * 1 2 3 31 31 H 1.08997 * 109.46753 * 59.99956 * 1 2 3 32 32 H 1.09005 * 109.46703 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47051 * 240.00641 * 2 1 3 34 34 H 1.08997 * 109.47785 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47154 * 300.00213 * 3 2 1 36 36 H 1.08999 * 109.47014 * 59.99931 * 3 2 1 37 37 H 1.08998 * 111.00865 * 324.20873 * 7 5 4 38 38 H 1.09001 * 111.00102 * 88.02704 * 7 5 4 39 39 H 1.08997 * 110.49674 * 278.45165 * 8 7 5 40 40 H 1.09001 * 110.34378 * 156.06487 * 8 7 5 41 41 H 1.09001 * 109.58528 * 6.57800 * 15 14 12 42 42 H 1.08997 * 109.59013 * 246.15368 * 15 14 12 43 43 H 1.08998 * 109.49880 * 174.58613 * 16 15 14 44 44 H 1.09005 * 109.49629 * 294.65423 * 16 15 14 45 45 H 1.09004 * 109.45527 * 58.65473 * 17 16 15 46 46 H 1.08991 * 109.46363 * 178.62821 * 17 16 15 47 47 H 0.96996 * 120.00272 * 179.97438 * 23 22 20 48 48 H 1.09008 * 109.58066 * 113.84695 * 28 14 12 49 49 H 1.09000 * 109.70280 * 353.49387 * 28 14 12 50 50 H 1.09002 * 109.88200 * 120.70693 * 29 9 8 51 51 H 1.09005 * 109.88065 * 241.87240 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 3.2661 -1.3245 0.9885 6 1 3.3778 -1.6766 -0.0370 7 6 3.4248 -2.4972 1.9919 8 6 4.9683 -2.5905 2.1161 9 7 5.4329 -1.1921 2.0737 10 6 6.5911 -0.7332 2.5879 11 8 6.8749 0.4426 2.4896 12 6 7.5258 -1.6723 3.2792 13 8 7.3046 -2.8654 3.2693 14 7 8.6145 -1.1941 3.9138 15 6 8.9253 0.2416 3.8885 16 6 9.0964 0.7347 5.3288 17 6 10.1477 -0.1237 6.0360 18 6 9.6772 -1.5794 6.0764 19 1 8.7216 -1.6385 6.5973 20 6 10.6980 -2.4181 6.8013 21 1 11.5934 -1.9592 7.1938 22 6 10.4889 -3.7712 6.9634 23 7 9.3983 -4.3299 6.4859 24 14 11.7546 -4.8110 7.8614 25 1 11.4331 -4.8397 9.3109 26 1 11.7317 -6.1942 7.3217 27 1 13.1051 -4.2254 7.6655 28 6 9.5126 -2.0986 4.6445 29 6 4.4265 -0.3821 1.3718 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9662 -2.2558 2.9508 38 1 3.0104 -3.4191 1.5841 39 1 5.3850 -3.1543 1.2815 40 1 5.2450 -3.0536 3.0633 41 1 8.1090 0.7839 3.4112 42 1 9.8492 0.4058 3.3339 43 1 9.4214 1.7750 5.3210 44 1 8.1458 0.6543 5.8561 45 1 11.0913 -0.0620 5.4938 46 1 10.2891 0.2404 7.0535 47 1 9.2513 -5.2819 6.5996 48 1 10.4845 -2.1253 4.1515 49 1 9.0862 -3.1015 4.6662 50 1 4.0616 0.4071 2.0292 51 1 4.8626 0.0536 0.4728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330448511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:24 Heat of formation + Delta-G solvation = -116.661592 kcal Electronic energy + Delta-G solvation = -30728.438717 eV Core-core repulsion = 26627.729111 eV Total energy + Delta-G solvation = -4100.709606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11472 -40.50268 -39.42971 -38.63180 -37.75272 -35.24345 -33.81994 -33.45117 -31.77919 -31.58503 -29.98828 -28.00793 -27.61700 -26.88286 -25.17868 -23.67947 -23.15713 -22.28580 -22.16203 -21.17401 -20.17899 -18.68095 -18.36363 -18.09626 -17.77220 -17.18240 -16.99662 -16.63179 -16.40643 -15.82828 -15.54550 -15.43712 -15.20016 -14.77148 -14.66133 -14.52092 -14.49196 -14.31030 -14.15139 -13.88560 -13.53052 -13.43196 -13.28863 -13.05898 -13.00958 -12.92990 -12.88526 -12.69737 -12.45172 -12.30121 -12.15458 -12.06409 -11.75812 -11.73178 -11.60743 -11.44487 -11.14434 -10.99305 -10.65925 -10.54956 -10.04361 -9.94870 -9.53985 -8.12520 -6.29010 0.31323 1.15484 1.41823 1.42293 1.53019 2.09301 2.31993 2.42417 2.68535 3.06831 3.16833 3.47116 3.48008 3.98158 4.00577 4.12326 4.16143 4.17409 4.20542 4.23404 4.32719 4.34574 4.53771 4.56311 4.57841 4.69380 4.72559 4.78287 4.80124 4.87498 4.90972 4.93019 4.96354 4.99419 5.04178 5.08598 5.11475 5.21283 5.23910 5.31005 5.33598 5.36987 5.47809 5.55958 5.82858 5.91647 5.96370 6.26598 6.30158 6.38129 6.62422 6.81843 6.96227 7.40677 8.91657 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.002556 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.660859 B =10952.669896 C =11924.573462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 C -0.178 4.178 4 O -0.380 6.380 5 C 0.088 3.912 6 H 0.109 0.891 7 C -0.121 4.121 8 C 0.096 3.904 9 N -0.584 5.584 10 C 0.528 3.472 11 O -0.523 6.523 12 C 0.488 3.512 13 O -0.547 6.547 14 N -0.574 5.574 15 C 0.048 3.952 16 C -0.123 4.123 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.535 4.535 21 H 0.062 0.938 22 C 0.011 3.989 23 N -0.914 5.914 24 Si 0.960 3.040 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.264 1.264 28 C 0.122 3.878 29 C 0.082 3.918 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.262 0.738 48 H 0.044 0.956 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 9.083 -16.362 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 C -0.236 4.236 4 O -0.298 6.298 5 C 0.029 3.971 6 H 0.127 0.873 7 C -0.159 4.159 8 C -0.026 4.026 9 N -0.317 5.317 10 C 0.312 3.688 11 O -0.403 6.403 12 C 0.271 3.729 13 O -0.426 6.426 14 N -0.306 5.306 15 C -0.072 4.072 16 C -0.161 4.161 17 C -0.144 4.144 18 C 0.020 3.980 19 H 0.007 0.993 20 C -0.574 4.574 21 H 0.080 0.920 22 C -0.188 4.188 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.188 1.188 28 C 0.001 3.999 29 C -0.040 4.040 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.091 0.909 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.089 8.936 -16.236 24.542 hybrid contribution 1.041 -0.827 0.777 1.540 sum -15.048 8.109 -15.458 23.047 Atomic orbital electron populations 1.21873 0.92705 1.02921 1.03028 1.22458 0.95777 0.92700 0.87722 1.22396 1.01429 0.96742 1.03023 1.88006 1.34681 1.69830 1.37330 1.23186 0.82344 0.90961 1.00585 0.87290 1.22977 0.93009 0.99356 1.00547 1.22788 0.94428 0.81085 1.04271 1.48245 1.17539 1.12265 1.53672 1.19787 0.81913 0.87417 0.79634 1.90241 1.73717 1.17580 1.58790 1.20242 0.83047 0.88334 0.81320 1.90699 1.73819 1.16806 1.61233 1.48469 1.23383 1.10617 1.48083 1.23366 1.05776 0.79431 0.98655 1.21876 0.98843 1.00290 0.95099 1.21559 0.98063 0.95109 0.99689 1.18904 0.95030 0.92833 0.91246 0.99344 1.21466 1.06281 0.93511 1.36126 0.91952 1.25882 0.97283 0.99449 0.96213 1.70049 1.27167 1.11871 1.46159 0.85531 0.79632 0.77765 0.78597 1.20163 1.21062 1.18816 1.21954 0.90589 0.94938 0.92431 1.22850 0.88835 0.95078 0.97239 0.92693 0.89438 0.91900 0.90261 0.92807 0.89952 0.92753 0.90395 0.86219 0.89190 0.90390 0.82934 0.90989 0.88331 0.93614 0.92407 0.92758 0.92898 0.93790 0.89462 0.90914 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.56 71.98 0.69 -0.78 16 2 C 0.07 0.84 3.34 30.59 0.10 0.94 16 3 C -0.18 -2.13 9.37 71.98 0.67 -1.45 16 4 O -0.38 -6.53 9.73 -148.98 -1.45 -7.98 16 5 C 0.09 1.41 3.39 31.78 0.11 1.51 16 6 H 0.11 1.19 7.48 -2.39 -0.02 1.17 16 7 C -0.12 -2.16 6.82 32.06 0.22 -1.94 16 8 C 0.10 2.41 5.98 86.93 0.52 2.93 16 9 N -0.58 -16.53 3.32 -812.92 -2.70 -19.23 16 10 C 0.53 18.58 7.83 87.27 0.68 19.27 16 11 O -0.52 -18.51 13.35 -3.25 -0.04 -18.55 16 12 C 0.49 20.74 7.71 87.27 0.67 21.42 16 13 O -0.55 -25.73 13.31 -3.22 -0.04 -25.77 16 14 N -0.57 -25.02 2.97 -820.48 -2.44 -27.46 16 15 C 0.05 1.73 6.24 86.36 0.54 2.27 16 16 C -0.12 -4.31 6.08 30.67 0.19 -4.13 16 17 C -0.11 -4.41 5.11 30.62 0.16 -4.25 16 18 C 0.04 2.02 2.25 -11.46 -0.03 2.00 16 19 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 20 C -0.54 -29.70 8.56 25.60 0.22 -29.48 16 21 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 22 C 0.01 0.63 5.30 84.65 0.45 1.08 16 23 N -0.91 -54.60 11.40 21.45 0.24 -54.35 16 24 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.12 6.22 5.39 86.36 0.47 6.69 16 29 C 0.08 1.74 5.43 86.73 0.47 2.21 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.08 0.69 7.43 -2.38 -0.02 0.67 16 34 H 0.05 0.71 6.81 -2.39 -0.02 0.69 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.49 6.34 -2.39 -0.02 2.48 16 41 H 0.15 5.36 3.76 -83.42 -0.31 5.05 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 49 H 0.09 5.12 5.15 -2.39 -0.01 5.11 16 50 H 0.07 1.72 8.06 -2.39 -0.02 1.70 16 51 H 0.09 1.62 7.89 -2.38 -0.02 1.61 16 Total: -1.00 -69.19 394.40 2.33 -66.87 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.61 Total: 22.13 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 6.13 Total: 18.28 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -4.90 Total: -101.04 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -1.54 Total: -52.30 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.19 2.33 -66.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330448511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.796 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds