Wall clock time and date at job start Tue Mar 31 2020 22:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 O 1.42898 * 109.46973 * 120.00030 * 2 1 3 5 5 C 1.42894 * 114.00214 * 90.00024 * 4 2 1 6 6 H 1.09002 * 109.50036 * 330.06219 * 5 4 2 7 7 C 1.53039 * 109.50134 * 209.99651 * 5 4 2 8 8 C 1.53040 * 109.53885 * 178.67974 * 7 5 4 9 9 C 1.53188 * 109.31223 * 61.36814 * 8 7 5 10 10 N 1.46927 * 108.77507 * 305.36297 * 9 8 7 11 11 C 1.34772 * 120.63061 * 233.58177 * 10 9 8 12 12 O 1.21352 * 120.00227 * 181.57721 * 11 10 9 13 13 C 1.49455 * 120.00009 * 1.57946 * 11 10 9 14 14 O 1.21344 * 120.00003 * 351.62941 * 13 11 10 15 15 N 1.34778 * 120.00016 * 171.62725 * 13 11 10 16 16 C 1.46501 * 120.00082 * 185.01662 * 15 13 11 17 17 C 1.52996 * 109.47344 * 175.18358 * 16 15 13 18 18 C 1.50699 * 115.55309 * 281.44548 * 17 16 15 19 19 H 1.07994 * 120.00452 * 143.51062 * 18 17 16 20 20 C 1.37884 * 119.99690 * 323.51117 * 18 17 16 21 21 N 1.31515 * 119.99910 * 341.04749 * 20 18 17 22 22 Si 1.86795 * 119.99834 * 161.04212 * 20 18 17 23 23 H 1.48501 * 109.47085 * 60.00301 * 22 20 18 24 24 H 1.48501 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47677 * 300.00236 * 22 20 18 26 26 C 1.52995 * 117.49978 * 135.73027 * 17 16 15 27 27 C 1.52997 * 60.00181 * 252.51426 * 26 17 16 28 28 C 1.46924 * 118.73723 * 53.86046 * 10 9 8 29 29 H 1.09003 * 109.47611 * 59.99848 * 1 2 3 30 30 H 1.09004 * 109.47314 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47187 * 299.99800 * 1 2 3 32 32 H 1.08998 * 109.46821 * 239.99840 * 2 1 3 33 33 H 1.08995 * 109.47246 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46938 * 300.00564 * 3 2 1 35 35 H 1.09001 * 109.46863 * 60.00002 * 3 2 1 36 36 H 1.09002 * 109.45902 * 58.66570 * 7 5 4 37 37 H 1.08998 * 109.45780 * 298.70320 * 7 5 4 38 38 H 1.08995 * 109.50234 * 301.41336 * 8 7 5 39 39 H 1.08997 * 109.52210 * 181.33228 * 8 7 5 40 40 H 1.08996 * 109.59056 * 185.57219 * 9 8 7 41 41 H 1.09007 * 109.70641 * 65.21829 * 9 8 7 42 42 H 0.96996 * 119.99828 * 5.02778 * 15 13 11 43 43 H 1.09001 * 109.47522 * 295.18841 * 16 15 13 44 44 H 1.09003 * 109.46680 * 55.18593 * 16 15 13 45 45 H 0.96999 * 119.99864 * 185.01779 * 21 20 18 46 46 H 1.09001 * 117.49649 * 0.02562 * 26 17 16 47 47 H 1.09001 * 117.49956 * 145.02200 * 26 17 16 48 48 H 1.09002 * 117.50071 * 252.50801 * 27 26 17 49 49 H 1.09003 * 117.49649 * 107.49158 * 27 26 17 50 50 H 1.09005 * 109.58957 * 65.93125 * 28 10 9 51 51 H 1.09002 * 109.58338 * 186.35137 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0781 0.9887 6 1 1.4948 -2.4514 0.2461 7 6 1.9697 -2.7984 2.3192 8 6 2.1447 -4.3059 2.1221 9 6 3.5761 -4.5934 1.6582 10 7 3.8545 -3.7917 0.4588 11 6 4.3058 -4.3765 -0.6685 12 8 4.5593 -3.6999 -1.6435 13 6 4.4942 -5.8583 -0.7178 14 8 4.3882 -6.5175 0.2955 15 7 4.7817 -6.4625 -1.8878 16 6 4.8578 -7.9238 -1.9583 17 6 5.0772 -8.3537 -3.4101 18 6 3.8504 -8.3377 -4.2852 19 1 3.9298 -8.0424 -5.3210 20 6 2.6267 -8.7000 -3.7634 21 7 2.5671 -9.4012 -2.6524 22 14 1.0534 -8.1948 -4.6346 23 1 1.0418 -8.7650 -6.0057 24 1 -0.1176 -8.7049 -3.8770 25 1 0.9851 -6.7135 -4.7140 26 6 6.1203 -9.4411 -3.6750 27 6 6.4135 -7.9898 -4.0603 28 6 3.6374 -2.3397 0.5136 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.9593 -2.5934 2.6729 37 1 2.6911 -2.4421 3.0545 38 1 1.4404 -4.6586 1.3688 39 1 1.9575 -4.8206 3.0645 40 1 3.6778 -5.6525 1.4215 41 1 4.2789 -4.3263 2.4474 42 1 4.9383 -5.9298 -2.6830 43 1 5.6887 -8.2744 -1.3460 44 1 3.9272 -8.3543 -1.5885 45 1 1.7111 -9.7183 -2.3243 46 1 6.6500 -9.8506 -2.8148 47 1 5.9193 -10.1455 -4.4822 48 1 6.4054 -7.7392 -5.1211 49 1 7.1364 -7.4443 -3.4537 50 1 4.3434 -1.8907 1.2122 51 1 3.7794 -1.9113 -0.4786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332815938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:53 Heat of formation + Delta-G solvation = -81.618983 kcal Electronic energy + Delta-G solvation = -30729.568002 eV Core-core repulsion = 26630.377957 eV Total energy + Delta-G solvation = -4099.190045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72677 -39.20385 -38.10329 -37.03519 -36.69181 -33.70038 -33.03194 -32.32146 -32.20804 -29.98599 -27.52009 -27.15889 -25.90047 -25.28842 -23.40446 -22.68773 -21.39809 -21.31347 -20.60864 -19.67178 -19.15643 -17.72985 -17.01679 -16.59382 -16.20336 -15.84393 -15.45671 -15.30879 -15.14112 -14.79838 -14.52505 -14.28380 -13.97523 -13.83958 -13.70031 -13.48814 -13.30341 -12.99298 -12.70218 -12.61771 -12.44928 -12.35894 -12.11654 -11.83079 -11.73502 -11.69057 -11.44677 -11.14960 -11.00821 -10.98027 -10.89448 -10.63279 -10.58515 -10.52558 -10.36061 -9.92110 -9.59014 -9.36196 -8.89268 -8.72825 -8.67892 -8.46983 -8.06883 -6.20723 -4.20627 1.78459 2.54728 3.20983 3.27913 3.31675 3.41251 3.58214 3.89005 4.26632 4.53717 4.60610 4.68256 4.79114 4.81806 4.87936 4.94069 4.96373 5.01582 5.06942 5.33052 5.37177 5.41487 5.45931 5.49686 5.54915 5.60003 5.63705 5.75243 5.82038 5.85674 5.89701 5.92323 5.95627 6.10890 6.18736 6.21914 6.35785 6.42338 6.51959 6.58564 6.79202 6.93968 7.04716 7.17204 7.20605 7.27258 7.44871 7.78828 7.86064 8.14412 8.26499 8.55516 8.74408 9.37458 10.81165 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.003118 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.858847 B = 8979.163293 C = 9635.762851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.373 6.373 5 C 0.079 3.921 6 H 0.066 0.934 7 C -0.116 4.116 8 C -0.131 4.131 9 C 0.045 3.955 10 N -0.582 5.582 11 C 0.509 3.491 12 O -0.526 6.526 13 C 0.499 3.501 14 O -0.525 6.525 15 N -0.662 5.662 16 C 0.137 3.863 17 C 0.037 3.963 18 C -0.498 4.498 19 H 0.064 0.936 20 C 0.075 3.925 21 N -0.869 5.869 22 Si 0.889 3.111 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.189 4.189 27 C -0.210 4.210 28 C 0.088 3.912 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.065 0.935 42 H 0.409 0.591 43 H 0.040 0.960 44 H 0.130 0.870 45 H 0.267 0.733 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 15.162 9.165 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.291 6.291 5 C 0.020 3.980 6 H 0.084 0.916 7 C -0.154 4.154 8 C -0.169 4.169 9 C -0.076 4.076 10 N -0.317 5.317 11 C 0.293 3.707 12 O -0.401 6.401 13 C 0.280 3.720 14 O -0.406 6.406 15 N -0.309 5.309 16 C 0.016 3.984 17 C 0.036 3.964 18 C -0.535 4.535 19 H 0.082 0.918 20 C -0.129 4.129 21 N -0.505 5.505 22 Si 0.716 3.284 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.228 4.228 27 C -0.248 4.248 28 C -0.035 4.035 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.182 0.818 41 H 0.083 0.917 42 H 0.245 0.755 43 H 0.059 0.941 44 H 0.147 0.853 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.730 15.097 9.649 18.000 hybrid contribution -0.835 0.472 -1.036 1.412 sum -2.565 15.568 8.613 17.976 Atomic orbital electron populations 1.22303 0.95956 1.02436 1.02494 1.22174 0.93680 0.93900 0.88382 1.21853 1.01888 0.94406 1.02409 1.87939 1.86163 1.19573 1.35437 1.22522 0.95499 0.81631 0.98352 0.91628 1.21635 1.02725 0.94926 0.96098 1.21912 0.97753 0.94840 1.02409 1.23421 0.95164 1.02946 0.86031 1.47880 1.63790 1.07418 1.12590 1.20463 0.78098 0.89404 0.82769 1.90724 1.49745 1.65075 1.34601 1.19823 0.79664 0.87578 0.84949 1.90225 1.52371 1.65516 1.32471 1.45988 1.64806 1.10070 1.10076 1.21590 1.04528 0.75518 0.96776 1.19122 0.88258 0.97263 0.91786 1.20462 0.90235 1.46515 0.96286 0.91756 1.24959 0.99163 0.93899 0.94911 1.69770 1.26102 1.32515 1.22115 0.86695 0.82438 0.79508 0.79755 1.20048 1.21105 1.19962 1.22945 1.06613 0.91208 1.02023 1.22914 1.02326 0.99257 1.00280 1.22216 0.96906 0.80853 1.03532 0.91621 0.92468 0.91834 0.91916 0.91908 0.91273 0.91868 0.91162 0.90968 0.91382 0.89855 0.81771 0.91681 0.75520 0.94144 0.85294 0.92308 0.91426 0.89987 0.90299 0.91213 0.90453 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.52 37.16 0.35 -1.16 16 2 C 0.08 0.74 3.14 -26.73 -0.08 0.66 16 3 C -0.15 -1.20 9.56 37.16 0.36 -0.84 16 4 O -0.37 -4.21 9.64 -35.23 -0.34 -4.55 16 5 C 0.08 0.91 2.56 -26.39 -0.07 0.84 16 6 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 7 C -0.12 -1.20 5.53 -26.69 -0.15 -1.35 16 8 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 9 C 0.04 0.59 6.21 -3.71 -0.02 0.57 16 10 N -0.58 -8.56 2.97 -173.01 -0.51 -9.07 16 11 C 0.51 9.01 7.76 -11.58 -0.09 8.92 16 12 O -0.53 -10.13 15.92 5.50 0.09 -10.04 16 13 C 0.50 9.67 7.79 -11.58 -0.09 9.58 16 14 O -0.52 -10.50 13.05 5.50 0.07 -10.43 16 15 N -0.66 -13.52 5.53 -60.73 -0.34 -13.86 16 16 C 0.14 3.09 5.31 -4.04 -0.02 3.07 16 17 C 0.04 0.85 1.72 -155.67 -0.27 0.58 16 18 C -0.50 -12.76 8.99 -34.44 -0.31 -13.06 16 19 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 20 C 0.07 1.93 5.10 -17.82 -0.09 1.84 16 21 N -0.87 -23.05 11.00 55.43 0.61 -22.44 16 22 Si 0.89 20.24 29.58 -169.99 -5.03 15.21 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.19 -4.06 9.88 -26.74 -0.26 -4.33 16 27 C -0.21 -4.26 9.92 -26.73 -0.27 -4.53 16 28 C 0.09 1.13 6.08 -3.49 -0.02 1.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.65 7.74 -51.93 -0.40 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.17 2.59 3.82 -56.84 -0.22 2.37 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.41 8.19 7.95 -40.82 -0.32 7.87 16 43 H 0.04 0.88 7.96 -51.93 -0.41 0.47 16 44 H 0.13 3.30 5.36 -51.93 -0.28 3.02 16 45 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 46 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 47 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 48 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.09 1.28 6.95 -51.93 -0.36 0.92 16 LS Contribution 407.83 15.07 6.15 6.15 Total: -1.00 -27.35 407.83 -9.19 -36.54 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -8.69 Total: 12.20 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.20 Total: 0.29 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.24 Total: -45.37 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.18 Total: -25.02 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -27.35 -9.19 -36.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332815938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.080 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds