Wall clock time and date at job start Tue Mar 31 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 O 1.42898 * 109.46973 * 120.00030 * 2 1 3 5 5 C 1.42894 * 114.00214 * 90.00024 * 4 2 1 6 6 H 1.09002 * 109.50036 * 330.06219 * 5 4 2 7 7 C 1.53039 * 109.50134 * 209.99651 * 5 4 2 8 8 C 1.53040 * 109.53885 * 178.67974 * 7 5 4 9 9 C 1.53188 * 109.31223 * 61.36814 * 8 7 5 10 10 N 1.46927 * 108.77507 * 305.36297 * 9 8 7 11 11 C 1.34772 * 120.63061 * 233.58177 * 10 9 8 12 12 O 1.21352 * 120.00227 * 181.57721 * 11 10 9 13 13 C 1.49455 * 120.00009 * 1.57946 * 11 10 9 14 14 O 1.21344 * 120.00003 * 351.62941 * 13 11 10 15 15 N 1.34778 * 120.00016 * 171.62725 * 13 11 10 16 16 C 1.46501 * 120.00082 * 185.01662 * 15 13 11 17 17 C 1.52996 * 109.47344 * 175.18358 * 16 15 13 18 18 C 1.50699 * 115.55309 * 281.44548 * 17 16 15 19 19 H 1.07994 * 120.00452 * 143.51062 * 18 17 16 20 20 C 1.37884 * 119.99690 * 323.51117 * 18 17 16 21 21 N 1.31515 * 119.99910 * 341.04749 * 20 18 17 22 22 Si 1.86795 * 119.99834 * 161.04212 * 20 18 17 23 23 H 1.48501 * 109.47085 * 60.00301 * 22 20 18 24 24 H 1.48501 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47677 * 300.00236 * 22 20 18 26 26 C 1.52995 * 117.49978 * 135.73027 * 17 16 15 27 27 C 1.52997 * 60.00181 * 252.51426 * 26 17 16 28 28 C 1.46924 * 118.73723 * 53.86046 * 10 9 8 29 29 H 1.09003 * 109.47611 * 59.99848 * 1 2 3 30 30 H 1.09004 * 109.47314 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47187 * 299.99800 * 1 2 3 32 32 H 1.08998 * 109.46821 * 239.99840 * 2 1 3 33 33 H 1.08995 * 109.47246 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46938 * 300.00564 * 3 2 1 35 35 H 1.09001 * 109.46863 * 60.00002 * 3 2 1 36 36 H 1.09002 * 109.45902 * 58.66570 * 7 5 4 37 37 H 1.08998 * 109.45780 * 298.70320 * 7 5 4 38 38 H 1.08995 * 109.50234 * 301.41336 * 8 7 5 39 39 H 1.08997 * 109.52210 * 181.33228 * 8 7 5 40 40 H 1.08996 * 109.59056 * 185.57219 * 9 8 7 41 41 H 1.09007 * 109.70641 * 65.21829 * 9 8 7 42 42 H 0.96996 * 119.99828 * 5.02778 * 15 13 11 43 43 H 1.09001 * 109.47522 * 295.18841 * 16 15 13 44 44 H 1.09003 * 109.46680 * 55.18593 * 16 15 13 45 45 H 0.96999 * 119.99864 * 185.01779 * 21 20 18 46 46 H 1.09001 * 117.49649 * 0.02562 * 26 17 16 47 47 H 1.09001 * 117.49956 * 145.02200 * 26 17 16 48 48 H 1.09002 * 117.50071 * 252.50801 * 27 26 17 49 49 H 1.09003 * 117.49649 * 107.49158 * 27 26 17 50 50 H 1.09005 * 109.58957 * 65.93125 * 28 10 9 51 51 H 1.09002 * 109.58338 * 186.35137 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0781 0.9887 6 1 1.4948 -2.4514 0.2461 7 6 1.9697 -2.7984 2.3192 8 6 2.1447 -4.3059 2.1221 9 6 3.5761 -4.5934 1.6582 10 7 3.8545 -3.7917 0.4588 11 6 4.3058 -4.3765 -0.6685 12 8 4.5593 -3.6999 -1.6435 13 6 4.4942 -5.8583 -0.7178 14 8 4.3882 -6.5175 0.2955 15 7 4.7817 -6.4625 -1.8878 16 6 4.8578 -7.9238 -1.9583 17 6 5.0772 -8.3537 -3.4101 18 6 3.8504 -8.3377 -4.2852 19 1 3.9298 -8.0424 -5.3210 20 6 2.6267 -8.7000 -3.7634 21 7 2.5671 -9.4012 -2.6524 22 14 1.0534 -8.1948 -4.6346 23 1 1.0418 -8.7650 -6.0057 24 1 -0.1176 -8.7049 -3.8770 25 1 0.9851 -6.7135 -4.7140 26 6 6.1203 -9.4411 -3.6750 27 6 6.4135 -7.9898 -4.0603 28 6 3.6374 -2.3397 0.5136 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.9593 -2.5934 2.6729 37 1 2.6911 -2.4421 3.0545 38 1 1.4404 -4.6586 1.3688 39 1 1.9575 -4.8206 3.0645 40 1 3.6778 -5.6525 1.4215 41 1 4.2789 -4.3263 2.4474 42 1 4.9383 -5.9298 -2.6830 43 1 5.6887 -8.2744 -1.3460 44 1 3.9272 -8.3543 -1.5885 45 1 1.7111 -9.7183 -2.3243 46 1 6.6500 -9.8506 -2.8148 47 1 5.9193 -10.1455 -4.4822 48 1 6.4054 -7.7392 -5.1211 49 1 7.1364 -7.4443 -3.4537 50 1 4.3434 -1.8907 1.2122 51 1 3.7794 -1.9113 -0.4786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332815938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:52 Heat of formation + Delta-G solvation = -97.215607 kcal Electronic energy + Delta-G solvation = -30730.244323 eV Core-core repulsion = 26630.377957 eV Total energy + Delta-G solvation = -4099.866365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07459 -40.34520 -39.44320 -38.59360 -37.92972 -35.12069 -34.26128 -34.12868 -33.16838 -30.98807 -28.75315 -28.15767 -27.62268 -26.76689 -24.47311 -23.94931 -22.98636 -22.15563 -21.79739 -21.27738 -20.67263 -19.05949 -18.26324 -18.03422 -17.58804 -17.21932 -16.78853 -16.67670 -16.39438 -16.11552 -16.01249 -15.46152 -15.33405 -15.11246 -14.92608 -14.57171 -14.44961 -14.26601 -14.07409 -13.67602 -13.51226 -13.45802 -13.23310 -13.09886 -12.97228 -12.85693 -12.76101 -12.73212 -12.36764 -12.35074 -12.08624 -12.06293 -11.84617 -11.74809 -11.50801 -11.35384 -11.21394 -10.81277 -10.66850 -10.26885 -10.13545 -9.88058 -9.77697 -8.15416 -6.19733 0.31908 1.22222 1.38006 1.42979 1.48387 2.10777 2.37426 2.40061 2.65833 2.94583 3.30440 3.64135 3.66989 3.70034 3.94624 3.95356 4.02159 4.10774 4.14113 4.19420 4.22818 4.42018 4.48980 4.49999 4.59380 4.66865 4.70817 4.71399 4.79900 4.81696 4.87432 4.89286 4.92314 4.94989 4.96798 5.04408 5.12777 5.19967 5.23825 5.24366 5.27584 5.31450 5.52687 5.55517 5.66859 5.92298 5.93470 6.18375 6.30278 6.36512 6.68257 6.78320 7.01210 7.39602 8.84938 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.003118 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.858847 B = 8979.163293 C = 9635.762851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.377 6.377 5 C 0.084 3.916 6 H 0.053 0.947 7 C -0.110 4.110 8 C -0.125 4.125 9 C 0.042 3.958 10 N -0.571 5.571 11 C 0.509 3.491 12 O -0.547 6.547 13 C 0.497 3.503 14 O -0.534 6.534 15 N -0.666 5.666 16 C 0.151 3.849 17 C 0.008 3.992 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.037 3.963 21 N -0.891 5.891 22 Si 0.938 3.062 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.277 1.277 26 C -0.189 4.189 27 C -0.185 4.185 28 C 0.088 3.912 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.410 0.590 43 H 0.043 0.957 44 H 0.099 0.901 45 H 0.265 0.735 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 16.790 10.084 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 C -0.202 4.202 4 O -0.295 6.295 5 C 0.025 3.975 6 H 0.072 0.928 7 C -0.147 4.147 8 C -0.163 4.163 9 C -0.078 4.078 10 N -0.305 5.305 11 C 0.291 3.709 12 O -0.425 6.425 13 C 0.279 3.721 14 O -0.415 6.415 15 N -0.314 5.314 16 C 0.028 3.972 17 C 0.007 3.993 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.165 4.165 21 N -0.528 5.528 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.228 4.228 27 C -0.222 4.222 28 C -0.034 4.034 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.159 0.841 41 H 0.105 0.895 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.112 0.888 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.911 16.738 10.595 19.901 hybrid contribution -0.764 -0.009 -1.277 1.488 sum -2.675 16.729 9.317 19.335 Atomic orbital electron populations 1.22278 0.95093 1.02107 1.03392 1.22357 0.94463 0.94602 0.87502 1.21851 1.01657 0.93323 1.03383 1.87933 1.86285 1.19194 1.36134 1.22435 0.94092 0.82162 0.98828 0.92839 1.21601 1.03799 0.93858 0.95458 1.21876 0.95645 0.95803 1.02964 1.23421 0.97301 1.01333 0.85747 1.47978 1.62050 1.08471 1.12030 1.20134 0.78793 0.88417 0.83507 1.90711 1.51281 1.65051 1.35504 1.20183 0.78967 0.88536 0.84452 1.90270 1.52243 1.66283 1.32667 1.45913 1.65587 1.09289 1.10636 1.21210 1.02928 0.76612 0.96417 1.19155 0.88690 0.99447 0.92031 1.20699 0.91597 1.46257 0.96367 0.92475 1.25515 1.01403 0.93983 0.95613 1.69883 1.26325 1.33445 1.23175 0.85910 0.79739 0.78823 0.79073 1.19501 1.20956 1.20224 1.22943 1.05866 0.91660 1.02289 1.22911 1.00437 0.98248 1.00613 1.22360 0.98391 0.79258 1.03413 0.90335 0.93395 0.91336 0.92957 0.92274 0.89777 0.91425 0.89998 0.89792 0.92901 0.87532 0.84102 0.89488 0.75396 0.93913 0.88323 0.92552 0.90177 0.90687 0.89809 0.89288 0.88826 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.52 71.98 0.69 -2.04 16 2 C 0.07 1.24 3.14 30.59 0.10 1.34 16 3 C -0.14 -2.09 9.56 71.98 0.69 -1.40 16 4 O -0.38 -7.89 9.64 -148.98 -1.44 -9.33 16 5 C 0.08 1.82 2.56 30.82 0.08 1.89 16 6 H 0.05 1.29 7.63 -2.39 -0.02 1.27 16 7 C -0.11 -1.99 5.53 30.62 0.17 -1.82 16 8 C -0.12 -2.52 6.08 30.67 0.19 -2.34 16 9 C 0.04 1.05 6.21 86.36 0.54 1.58 16 10 N -0.57 -16.37 2.97 -819.64 -2.43 -18.80 16 11 C 0.51 18.01 7.76 87.27 0.68 18.69 16 12 O -0.55 -21.20 15.92 -3.25 -0.05 -21.25 16 13 C 0.50 19.45 7.79 87.27 0.68 20.13 16 14 O -0.53 -21.56 13.05 -3.23 -0.04 -21.61 16 15 N -0.67 -27.51 5.53 -464.41 -2.57 -30.08 16 16 C 0.15 6.86 5.31 86.38 0.46 7.32 16 17 C 0.01 0.35 1.72 -52.93 -0.09 0.26 16 18 C -0.51 -26.42 8.99 25.60 0.23 -26.19 16 19 H 0.06 2.95 7.88 -2.91 -0.02 2.93 16 20 C 0.04 1.91 5.10 84.66 0.43 2.34 16 21 N -0.89 -48.10 11.00 21.45 0.24 -47.87 16 22 Si 0.94 41.85 29.58 68.60 2.03 43.88 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C -0.19 -7.98 9.88 30.59 0.30 -7.67 16 27 C -0.18 -7.24 9.92 30.59 0.30 -6.94 16 28 C 0.09 2.15 6.08 86.51 0.53 2.68 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.84 7.97 -2.39 -0.02 0.82 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.06 7.74 -2.39 -0.02 1.04 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.14 4.38 3.82 -80.06 -0.31 4.07 16 41 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.41 16.58 7.95 -92.71 -0.74 15.84 16 43 H 0.04 1.88 7.96 -2.39 -0.02 1.86 16 44 H 0.10 5.18 5.36 -2.39 -0.01 5.17 16 45 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 46 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 47 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 48 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 50 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 51 H 0.08 2.18 6.95 -2.39 -0.02 2.16 16 Total: -1.00 -58.34 407.83 1.59 -56.76 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.11 Total: 40.48 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.96 Total: 7.82 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -4.76 Total: -96.75 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.53 Total: -52.19 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -58.34 1.59 -56.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332815938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.458 kcal (2) G-P(sol) polarization free energy of solvation -58.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds