Wall clock time and date at job start Tue Mar 31 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50690 * 120.00381 * 2 1 4 4 O 1.42903 * 109.47522 * 134.99755 * 3 2 1 5 5 C 1.42903 * 114.00297 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46995 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00612 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99905 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00267 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47309 * 180.02562 * 9 8 6 11 11 H 1.08999 * 110.66271 * 307.93636 * 10 9 8 12 12 C 1.55108 * 110.60831 * 184.99892 * 10 9 8 13 13 C 1.54317 * 101.96929 * 204.85851 * 12 10 9 14 14 C 1.53591 * 104.68515 * 20.62490 * 13 12 10 15 15 O 1.43895 * 107.11491 * 2.10441 * 14 13 12 16 16 C 1.52425 * 110.03841 * 139.34095 * 13 12 10 17 17 C 1.53294 * 109.38895 * 62.08732 * 16 13 12 18 18 N 1.46923 * 108.72426 * 53.70594 * 17 16 13 19 19 C 1.36935 * 120.57327 * 125.87441 * 18 17 16 20 20 H 1.08003 * 119.99761 * 331.93674 * 19 18 17 21 21 C 1.38812 * 120.00324 * 151.93155 * 19 18 17 22 22 N 1.31618 * 119.99667 * 342.92272 * 21 19 18 23 23 Si 1.86798 * 120.00022 * 162.92290 * 21 19 18 24 24 H 1.48501 * 109.46930 * 266.24539 * 23 21 19 25 25 H 1.48495 * 109.47028 * 26.24630 * 23 21 19 26 26 H 1.48503 * 109.46973 * 146.24990 * 23 21 19 27 27 C 1.46926 * 118.85803 * 306.14043 * 18 17 16 28 28 C 1.52432 * 110.03397 * 261.92496 * 13 12 10 29 29 H 1.08001 * 120.00372 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99975 * 359.97438 * 1 2 3 31 31 H 1.08012 * 119.99742 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47372 * 15.00080 * 3 2 1 33 33 H 1.08997 * 109.47642 * 254.99833 * 3 2 1 34 34 H 1.08999 * 109.46965 * 59.99831 * 5 4 3 35 35 H 1.09002 * 109.46945 * 300.00192 * 5 4 3 36 36 H 0.96996 * 120.00017 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.47278 * 60.00136 * 9 8 6 38 38 H 1.09002 * 109.47193 * 300.00153 * 9 8 6 39 39 H 1.09002 * 110.92807 * 86.69100 * 12 10 9 40 40 H 1.09001 * 110.96097 * 323.04230 * 12 10 9 41 41 H 1.09003 * 109.91294 * 121.47719 * 14 13 12 42 42 H 1.09001 * 109.91100 * 242.73196 * 14 13 12 43 43 H 1.08997 * 109.48674 * 302.10859 * 16 13 12 44 44 H 1.08999 * 109.48747 * 182.05881 * 16 13 12 45 45 H 1.08997 * 109.59302 * 293.92611 * 17 16 13 46 46 H 1.08998 * 109.71907 * 173.55216 * 17 16 13 47 47 H 0.97002 * 120.00351 * 179.97438 * 22 21 19 48 48 H 1.08991 * 109.59550 * 173.63140 * 27 18 17 49 49 H 1.08999 * 109.59349 * 294.09672 * 27 18 17 50 50 H 1.08994 * 109.48431 * 57.89048 * 28 13 12 51 51 H 1.08997 * 109.48759 * 177.94127 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 4.9940 2.2566 2.0620 7 8 5.0903 1.2098 2.6669 8 7 5.8593 3.2599 2.3095 9 6 6.9150 3.0866 3.3103 10 6 7.7514 4.3648 3.3961 11 1 8.0962 4.6660 2.4069 12 6 8.9532 4.1675 4.3565 13 6 9.2464 5.6151 4.8038 14 6 7.9446 6.3804 4.5237 15 8 6.9940 5.4272 4.0154 16 6 9.5731 5.6457 6.2924 17 6 10.8362 4.8172 6.5533 18 7 11.9081 5.3013 5.6728 19 6 13.1166 5.6828 6.1915 20 1 13.1750 6.0647 7.2001 21 6 14.2667 5.5785 5.4212 22 7 14.2714 4.8207 4.3451 23 14 15.8075 6.5137 5.9119 24 1 15.8434 7.8165 5.2002 25 1 15.7970 6.7505 7.3778 26 1 17.0069 5.7174 5.5476 27 6 11.6590 5.3748 4.2266 28 6 10.3922 6.1937 3.9817 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3856 2.1160 0.2660 33 1 2.4756 1.4867 -0.9926 34 1 3.2678 3.2693 1.3205 35 1 4.3580 2.6407 0.0617 36 1 5.7827 4.0969 1.8255 37 1 7.5547 2.2521 3.0230 38 1 6.4648 2.8815 4.2816 39 1 9.8072 3.7423 3.8293 40 1 8.6744 3.5459 5.2074 41 1 7.5688 6.8238 5.4459 42 1 8.1236 7.1581 3.7813 43 1 8.7401 5.2261 6.8562 44 1 9.7427 6.6757 6.6063 45 1 10.6349 3.7672 6.3411 46 1 11.1402 4.9279 7.5942 47 1 15.0749 4.7481 3.8065 48 1 12.5041 5.8555 3.7341 49 1 11.5237 4.3696 3.8275 50 1 10.1341 6.1588 2.9234 51 1 10.5675 7.2275 4.2795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569580190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:04 Heat of formation + Delta-G solvation = -86.032846 kcal Electronic energy + Delta-G solvation = -29470.940143 eV Core-core repulsion = 25371.558698 eV Total energy + Delta-G solvation = -4099.381444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.37936 -39.74838 -38.07868 -36.81736 -34.88949 -34.23560 -33.37833 -31.22931 -30.83196 -29.99658 -28.75988 -26.80121 -26.21959 -25.04214 -23.85813 -22.44877 -21.46741 -20.92849 -20.79824 -20.27300 -18.26687 -17.58688 -17.25070 -16.88360 -16.66135 -16.30877 -15.84356 -15.33409 -15.20952 -15.04257 -14.84381 -14.39243 -14.05814 -13.95903 -13.74893 -13.51373 -13.26344 -12.99280 -12.87314 -12.59991 -12.54479 -12.30072 -12.15394 -11.90023 -11.47378 -11.40928 -11.23815 -11.06585 -10.89117 -10.76667 -10.49897 -10.40225 -10.23337 -10.21466 -9.97594 -9.85763 -9.75114 -9.63382 -9.47754 -9.40250 -9.24148 -8.48327 -6.68596 -5.81800 -3.24051 1.69350 2.43351 2.62273 3.35439 3.42996 3.44129 3.67517 3.87062 4.43211 4.47297 4.59676 4.63053 4.65941 4.74656 4.78884 4.87664 4.92134 5.04712 5.05823 5.12535 5.18121 5.33099 5.39612 5.42893 5.54511 5.60585 5.68623 5.77097 5.88694 5.91619 6.04292 6.12204 6.13668 6.17797 6.20546 6.24967 6.27745 6.45603 6.52564 6.56480 6.64103 6.71818 6.81488 6.91968 7.01420 7.29219 7.31353 7.61195 7.77349 8.03828 8.42691 9.19052 9.82437 10.39008 11.26677 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029586 B = 0.001783 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.156699 B =15697.391893 C =16040.550563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.512 3.488 7 O -0.520 6.520 8 N -0.724 5.724 9 C 0.130 3.870 10 C 0.064 3.936 11 H 0.075 0.925 12 C -0.135 4.135 13 C -0.077 4.077 14 C 0.055 3.945 15 O -0.379 6.379 16 C -0.119 4.119 17 C 0.145 3.855 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.291 1.291 27 C 0.171 3.829 28 C -0.129 4.129 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.403 0.597 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.020 0.980 50 H 0.048 0.952 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.988 -1.126 -9.595 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.297 3.703 7 O -0.395 6.395 8 N -0.377 5.377 9 C 0.007 3.993 10 C 0.006 3.994 11 H 0.093 0.907 12 C -0.173 4.173 13 C -0.078 4.078 14 C -0.022 4.022 15 O -0.298 6.298 16 C -0.158 4.158 17 C 0.019 3.981 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.218 1.218 27 C 0.045 3.955 28 C -0.168 4.168 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.038 0.962 50 H 0.067 0.933 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.952 -2.101 -9.108 24.782 hybrid contribution 0.995 1.234 -0.270 1.608 sum -21.957 -0.866 -9.378 23.892 Atomic orbital electron populations 1.23845 0.95495 1.02356 0.99971 1.22718 0.95626 0.98202 1.00261 1.21626 0.88742 0.96280 0.92350 1.88052 1.44342 1.34886 1.60500 1.22196 0.93274 0.89324 0.98744 1.20191 0.82400 0.84016 0.83740 1.90752 1.72057 1.26914 1.49754 1.45833 1.32150 1.17291 1.42463 1.21459 0.88755 0.96547 0.92559 1.23402 0.91410 0.87226 0.97344 0.90746 1.23196 0.97331 0.97606 0.99142 1.21361 0.94759 0.94083 0.97582 1.23354 0.88707 0.91520 0.98571 1.88845 1.30888 1.34223 1.75893 1.21987 0.99069 1.01420 0.93311 1.20925 0.87970 0.94471 0.94766 1.44003 1.10657 1.74743 1.01897 1.19212 0.83947 1.35357 0.99699 0.91726 1.25029 0.97374 0.98529 0.98649 1.70028 1.28114 1.38400 1.18175 0.86286 0.82878 0.79516 0.78158 1.21522 1.20405 1.21784 1.20728 0.93647 0.95960 0.85134 1.22097 0.96985 1.00731 0.96962 0.87667 0.88407 0.86357 0.92513 0.92023 0.90110 0.90120 0.76266 0.89759 0.90399 0.88922 0.90368 0.90147 0.92535 0.92845 0.92192 0.96290 0.92860 0.93666 0.89517 0.96217 0.93305 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 14.31 29.02 0.42 -0.64 16 2 C -0.15 -1.11 9.89 -36.03 -0.36 -1.47 16 3 C 0.09 0.63 6.35 36.00 0.23 0.86 16 4 O -0.36 -3.94 9.86 -55.14 -0.54 -4.49 16 5 C 0.04 0.37 6.42 36.00 0.23 0.60 16 6 C 0.51 6.13 7.91 -10.99 -0.09 6.05 16 7 O -0.52 -8.78 16.50 -14.35 -0.24 -9.02 16 8 N -0.72 -7.36 5.56 -60.30 -0.33 -7.69 16 9 C 0.13 1.54 5.42 -4.04 -0.02 1.52 16 10 C 0.06 0.78 3.38 -25.62 -0.09 0.69 16 11 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 12 C -0.13 -1.94 4.55 -24.93 -0.11 -2.05 16 13 C -0.08 -1.18 0.63 -154.10 -0.10 -1.28 16 14 C 0.06 0.73 7.04 37.46 0.26 1.00 16 15 O -0.38 -5.05 11.23 -35.23 -0.40 -5.44 16 16 C -0.12 -1.95 4.54 -26.87 -0.12 -2.07 16 17 C 0.15 2.92 6.21 -3.66 -0.02 2.90 16 18 N -0.59 -14.17 2.99 -172.49 -0.52 -14.69 16 19 C -0.25 -6.77 9.57 -15.06 -0.14 -6.92 16 20 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 23 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.17 3.83 4.98 -3.90 -0.02 3.81 16 28 C -0.13 -2.25 4.65 -27.11 -0.13 -2.37 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.10 0.46 7.90 -52.49 -0.41 0.05 16 31 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.06 0.33 7.86 -51.93 -0.41 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.40 3.03 8.47 -40.82 -0.35 2.68 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.47 6.04 -51.93 -0.31 1.15 16 40 H 0.08 1.13 7.50 -51.93 -0.39 0.74 16 41 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 42 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 49 H 0.02 0.46 6.45 -51.93 -0.33 0.13 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -32.91 403.62 -9.23 -42.14 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.73 Total: 1.15 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.14 Total: 0.61 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.23 Total: -47.37 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.18 Total: -18.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.91 -9.23 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569580190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.890 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds