Wall clock time and date at job start Tue Mar 31 2020 22:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50690 * 120.00381 * 2 1 4 4 O 1.42903 * 109.47522 * 134.99755 * 3 2 1 5 5 C 1.42903 * 114.00297 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46995 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00612 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99905 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00267 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47309 * 180.02562 * 9 8 6 11 11 H 1.08999 * 110.66271 * 307.93636 * 10 9 8 12 12 C 1.55108 * 110.60831 * 184.99892 * 10 9 8 13 13 C 1.54317 * 101.96929 * 204.85851 * 12 10 9 14 14 C 1.53591 * 104.68515 * 20.62490 * 13 12 10 15 15 O 1.43895 * 107.11491 * 2.10441 * 14 13 12 16 16 C 1.52425 * 110.03841 * 139.34095 * 13 12 10 17 17 C 1.53294 * 109.38895 * 62.08732 * 16 13 12 18 18 N 1.46923 * 108.72426 * 53.70594 * 17 16 13 19 19 C 1.36935 * 120.57327 * 125.87441 * 18 17 16 20 20 H 1.08003 * 119.99761 * 331.93674 * 19 18 17 21 21 C 1.38812 * 120.00324 * 151.93155 * 19 18 17 22 22 N 1.31618 * 119.99667 * 342.92272 * 21 19 18 23 23 Si 1.86798 * 120.00022 * 162.92290 * 21 19 18 24 24 H 1.48501 * 109.46930 * 266.24539 * 23 21 19 25 25 H 1.48495 * 109.47028 * 26.24630 * 23 21 19 26 26 H 1.48503 * 109.46973 * 146.24990 * 23 21 19 27 27 C 1.46926 * 118.85803 * 306.14043 * 18 17 16 28 28 C 1.52432 * 110.03397 * 261.92496 * 13 12 10 29 29 H 1.08001 * 120.00372 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99975 * 359.97438 * 1 2 3 31 31 H 1.08012 * 119.99742 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47372 * 15.00080 * 3 2 1 33 33 H 1.08997 * 109.47642 * 254.99833 * 3 2 1 34 34 H 1.08999 * 109.46965 * 59.99831 * 5 4 3 35 35 H 1.09002 * 109.46945 * 300.00192 * 5 4 3 36 36 H 0.96996 * 120.00017 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.47278 * 60.00136 * 9 8 6 38 38 H 1.09002 * 109.47193 * 300.00153 * 9 8 6 39 39 H 1.09002 * 110.92807 * 86.69100 * 12 10 9 40 40 H 1.09001 * 110.96097 * 323.04230 * 12 10 9 41 41 H 1.09003 * 109.91294 * 121.47719 * 14 13 12 42 42 H 1.09001 * 109.91100 * 242.73196 * 14 13 12 43 43 H 1.08997 * 109.48674 * 302.10859 * 16 13 12 44 44 H 1.08999 * 109.48747 * 182.05881 * 16 13 12 45 45 H 1.08997 * 109.59302 * 293.92611 * 17 16 13 46 46 H 1.08998 * 109.71907 * 173.55216 * 17 16 13 47 47 H 0.97002 * 120.00351 * 179.97438 * 22 21 19 48 48 H 1.08991 * 109.59550 * 173.63140 * 27 18 17 49 49 H 1.08999 * 109.59349 * 294.09672 * 27 18 17 50 50 H 1.08994 * 109.48431 * 57.89048 * 28 13 12 51 51 H 1.08997 * 109.48759 * 177.94127 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 4.9940 2.2566 2.0620 7 8 5.0903 1.2098 2.6669 8 7 5.8593 3.2599 2.3095 9 6 6.9150 3.0866 3.3103 10 6 7.7514 4.3648 3.3961 11 1 8.0962 4.6660 2.4069 12 6 8.9532 4.1675 4.3565 13 6 9.2464 5.6151 4.8038 14 6 7.9446 6.3804 4.5237 15 8 6.9940 5.4272 4.0154 16 6 9.5731 5.6457 6.2924 17 6 10.8362 4.8172 6.5533 18 7 11.9081 5.3013 5.6728 19 6 13.1166 5.6828 6.1915 20 1 13.1750 6.0647 7.2001 21 6 14.2667 5.5785 5.4212 22 7 14.2714 4.8207 4.3451 23 14 15.8075 6.5137 5.9119 24 1 15.8434 7.8165 5.2002 25 1 15.7970 6.7505 7.3778 26 1 17.0069 5.7174 5.5476 27 6 11.6590 5.3748 4.2266 28 6 10.3922 6.1937 3.9817 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3856 2.1160 0.2660 33 1 2.4756 1.4867 -0.9926 34 1 3.2678 3.2693 1.3205 35 1 4.3580 2.6407 0.0617 36 1 5.7827 4.0969 1.8255 37 1 7.5547 2.2521 3.0230 38 1 6.4648 2.8815 4.2816 39 1 9.8072 3.7423 3.8293 40 1 8.6744 3.5459 5.2074 41 1 7.5688 6.8238 5.4459 42 1 8.1236 7.1581 3.7813 43 1 8.7401 5.2261 6.8562 44 1 9.7427 6.6757 6.6063 45 1 10.6349 3.7672 6.3411 46 1 11.1402 4.9279 7.5942 47 1 15.0749 4.7481 3.8065 48 1 12.5041 5.8555 3.7341 49 1 11.5237 4.3696 3.8275 50 1 10.1341 6.1588 2.9234 51 1 10.5675 7.2275 4.2795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569580190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:03 Heat of formation + Delta-G solvation = -107.840696 kcal Electronic energy + Delta-G solvation = -29471.885802 eV Core-core repulsion = 25371.558698 eV Total energy + Delta-G solvation = -4100.327104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51877 -40.71315 -38.79647 -38.25731 -35.93769 -35.02769 -34.75978 -32.76518 -32.04721 -31.62663 -29.54024 -28.37273 -26.95757 -25.89718 -25.51723 -23.99130 -22.74054 -22.17579 -21.75474 -20.84769 -19.78862 -18.52999 -18.31872 -18.00296 -17.55800 -17.26068 -16.83800 -16.67563 -16.43213 -15.99771 -15.93909 -15.54562 -15.48358 -15.28949 -14.87561 -14.79564 -14.49020 -14.22208 -13.99365 -13.80080 -13.46140 -13.23148 -13.18298 -13.07533 -13.02636 -12.82811 -12.59727 -12.53182 -12.28984 -12.09210 -11.89931 -11.85916 -11.82251 -11.46727 -11.09247 -11.05519 -10.98677 -10.85738 -10.58363 -10.48260 -10.26376 -10.17189 -8.64248 -7.86796 -5.31480 1.19678 1.46190 1.47610 1.54885 1.56453 1.87652 2.51393 2.79773 3.09028 3.26690 3.51944 3.70470 3.71445 3.76797 3.90342 4.06142 4.07925 4.09979 4.17607 4.23721 4.26344 4.29556 4.41512 4.46922 4.50674 4.58987 4.61691 4.67893 4.72733 4.77279 4.81559 4.88531 4.95415 4.98893 5.01389 5.06180 5.19243 5.31524 5.33894 5.37245 5.39933 5.53999 5.66440 5.66510 5.70338 5.79491 5.93258 6.08686 6.40565 6.52545 7.17074 7.19903 7.89123 8.39699 9.18946 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029586 B = 0.001783 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.156699 B =15697.391893 C =16040.550563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.084 3.916 4 O -0.399 6.399 5 C 0.047 3.953 6 C 0.506 3.494 7 O -0.579 6.579 8 N -0.709 5.709 9 C 0.134 3.866 10 C 0.079 3.921 11 H 0.092 0.908 12 C -0.135 4.135 13 C -0.076 4.076 14 C 0.063 3.937 15 O -0.380 6.380 16 C -0.108 4.108 17 C 0.141 3.859 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.270 1.270 26 H -0.296 1.296 27 C 0.177 3.823 28 C -0.114 4.114 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.419 0.581 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.014 0.986 46 H 0.048 0.952 47 H 0.249 0.751 48 H 0.049 0.951 49 H 0.003 0.997 50 H 0.070 0.930 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.287 0.764 -10.328 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.009 3.991 4 O -0.319 6.319 5 C -0.032 4.032 6 C 0.293 3.707 7 O -0.458 6.458 8 N -0.364 5.364 9 C 0.010 3.990 10 C 0.021 3.979 11 H 0.110 0.890 12 C -0.173 4.173 13 C -0.077 4.077 14 C -0.013 4.013 15 O -0.300 6.300 16 C -0.147 4.147 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.195 1.195 26 H -0.223 1.223 27 C 0.052 3.948 28 C -0.153 4.153 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.257 0.743 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.032 0.968 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.021 0.979 50 H 0.089 0.911 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.284 -0.160 -9.848 27.134 hybrid contribution 1.681 0.586 -0.011 1.781 sum -23.602 0.426 -9.859 25.582 Atomic orbital electron populations 1.24058 0.95018 1.03511 0.97808 1.22802 0.96361 0.98159 1.02348 1.21798 0.88298 0.96567 0.92486 1.88003 1.45577 1.36448 1.61831 1.22332 0.92553 0.89386 0.98888 1.20969 0.82862 0.83152 0.83671 1.90726 1.73704 1.29250 1.52144 1.45700 1.31172 1.17748 1.41737 1.21282 0.89031 0.96282 0.92431 1.23287 0.90217 0.87056 0.97348 0.89049 1.23121 0.97723 0.96950 0.99556 1.21304 0.95173 0.94890 0.96288 1.23277 0.87087 0.91288 0.99698 1.88853 1.30820 1.34283 1.76018 1.21852 0.97605 1.00606 0.94598 1.21059 0.88671 0.94891 0.93835 1.44262 1.10813 1.75192 1.02900 1.19513 0.85285 1.34769 0.99719 0.91934 1.25732 1.00102 0.99573 0.98962 1.70176 1.28524 1.39935 1.19281 0.85310 0.79254 0.78065 0.78165 1.21217 1.19477 1.22307 1.20544 0.94688 0.95472 0.84092 1.21883 0.95283 0.99367 0.98792 0.86870 0.86887 0.87764 0.90711 0.90412 0.87084 0.86901 0.74331 0.90408 0.91880 0.90783 0.90608 0.88937 0.91111 0.90504 0.92238 0.96768 0.93380 0.94179 0.93253 0.97943 0.91135 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 14.31 67.79 0.97 -0.73 16 2 C -0.18 -2.53 9.89 25.65 0.25 -2.27 16 3 C 0.08 1.07 6.35 71.23 0.45 1.53 16 4 O -0.40 -8.31 9.86 -129.94 -1.28 -9.59 16 5 C 0.05 0.68 6.42 71.23 0.46 1.13 16 6 C 0.51 11.56 7.91 87.65 0.69 12.25 16 7 O -0.58 -19.88 16.50 15.99 0.26 -19.62 16 8 N -0.71 -13.02 5.56 -463.06 -2.57 -15.59 16 9 C 0.13 3.02 5.42 86.38 0.47 3.49 16 10 C 0.08 1.73 3.38 31.32 0.11 1.83 16 11 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.14 -3.74 4.55 31.76 0.14 -3.60 16 13 C -0.08 -2.17 0.63 -51.91 -0.03 -2.21 16 14 C 0.06 1.45 7.04 72.18 0.51 1.96 16 15 O -0.38 -8.81 11.23 -148.98 -1.67 -10.48 16 16 C -0.11 -3.35 4.54 30.50 0.14 -3.22 16 17 C 0.14 5.67 6.21 86.40 0.54 6.20 16 18 N -0.61 -29.67 2.99 -699.63 -2.09 -31.76 16 19 C -0.26 -14.31 9.57 84.03 0.80 -13.50 16 20 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 21 C -0.05 -2.66 4.91 84.86 0.42 -2.25 16 22 N -0.93 -54.53 11.20 21.65 0.24 -54.29 16 23 Si 0.96 44.57 29.59 68.60 2.03 46.60 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 27 C 0.18 8.11 4.98 86.24 0.43 8.54 16 28 C -0.11 -3.86 4.65 30.35 0.14 -3.72 16 29 H 0.11 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.11 0.79 7.90 -2.91 -0.02 0.76 16 31 H 0.10 1.69 8.06 -2.90 -0.02 1.67 16 32 H 0.07 0.65 7.86 -2.39 -0.02 0.63 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.42 4.93 8.47 -92.71 -0.79 4.14 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.35 6.04 -2.39 -0.01 2.34 16 40 H 0.08 2.13 7.50 -2.39 -0.02 2.11 16 41 H 0.09 1.97 7.68 -2.39 -0.02 1.95 16 42 H 0.07 1.49 7.68 -2.39 -0.02 1.47 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.01 0.59 7.35 -2.39 -0.02 0.57 16 46 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 47 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 48 H 0.05 2.61 6.04 -2.39 -0.01 2.60 16 49 H 0.00 0.13 6.45 -2.39 -0.02 0.11 16 50 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.20 403.62 1.53 -72.68 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.12 Total: 16.62 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.49 Total: 5.44 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.42 Total: -101.64 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -2.69 Total: -39.69 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -74.20 1.53 -72.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569580190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.165 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds