Wall clock time and date at job start Tue Mar 31 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99658 * 2 1 4 4 O 1.42900 * 109.47152 * 135.00050 * 3 2 1 5 5 C 1.42894 * 114.00216 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47378 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00027 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00112 * 180.27613 * 6 5 4 9 9 C 1.46495 * 119.99807 * 179.72810 * 8 6 5 10 10 C 1.53008 * 109.46875 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.53924 * 59.29260 * 10 9 8 12 12 C 1.55098 * 110.60432 * 182.14214 * 10 9 8 13 13 C 1.54329 * 101.96306 * 155.15020 * 12 10 9 14 14 C 1.53595 * 104.68404 * 339.36224 * 13 12 10 15 15 O 1.44033 * 107.19484 * 358.03926 * 14 13 12 16 16 C 1.52423 * 110.03650 * 220.64285 * 13 12 10 17 17 C 1.53300 * 109.38724 * 297.91993 * 16 13 12 18 18 N 1.46921 * 108.72953 * 306.30221 * 17 16 13 19 19 C 1.36935 * 120.57024 * 234.15360 * 18 17 16 20 20 H 1.07994 * 120.00415 * 27.86805 * 19 18 17 21 21 C 1.38816 * 119.99459 * 207.86829 * 19 18 17 22 22 N 1.31612 * 120.00198 * 17.44823 * 21 19 18 23 23 Si 1.86798 * 119.99584 * 197.44932 * 21 19 18 24 24 H 1.48503 * 109.47661 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47380 * 120.00363 * 23 21 19 26 26 H 1.48508 * 109.47170 * 239.99825 * 23 21 19 27 27 C 1.46934 * 118.85585 * 54.12473 * 18 17 16 28 28 C 1.52428 * 110.02777 * 98.06178 * 13 12 10 29 29 H 1.08003 * 120.00519 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99881 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00315 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47197 * 14.99677 * 3 2 1 33 33 H 1.09004 * 109.46702 * 254.99866 * 3 2 1 34 34 H 1.08999 * 109.47250 * 59.99685 * 5 4 3 35 35 H 1.09003 * 109.46941 * 299.99977 * 5 4 3 36 36 H 0.97003 * 119.99712 * 359.72217 * 8 6 5 37 37 H 1.09003 * 109.47230 * 299.99008 * 9 8 6 38 38 H 1.08993 * 109.47482 * 59.99716 * 9 8 6 39 39 H 1.09003 * 110.93368 * 273.31436 * 12 10 9 40 40 H 1.08999 * 110.93372 * 36.94817 * 12 10 9 41 41 H 1.08995 * 109.90514 * 117.27795 * 14 13 12 42 42 H 1.08994 * 109.90835 * 238.35013 * 14 13 12 43 43 H 1.08997 * 109.49061 * 57.89710 * 16 13 12 44 44 H 1.08996 * 109.48495 * 177.95225 * 16 13 12 45 45 H 1.09003 * 109.59694 * 186.52406 * 17 16 13 46 46 H 1.09002 * 109.71920 * 66.15109 * 17 16 13 47 47 H 0.96999 * 120.00067 * 180.02562 * 22 21 19 48 48 H 1.08992 * 109.59620 * 186.09829 * 27 18 17 49 49 H 1.08999 * 109.72324 * 65.70637 * 27 18 17 50 50 H 1.09004 * 109.47950 * 182.04050 * 28 13 12 51 51 H 1.08991 * 109.48540 * 302.07135 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9938 2.2571 2.0621 7 8 5.0884 1.2112 2.6688 8 7 5.8557 3.2623 2.3134 9 6 6.9072 3.0914 3.3190 10 6 7.7411 4.3712 3.4075 11 1 7.1124 5.2193 3.6788 12 6 8.8970 4.2001 4.4274 13 6 9.9263 5.2321 3.9204 14 6 9.5393 5.4805 2.4549 15 8 8.4215 4.6220 2.1584 16 6 11.3336 4.6533 4.0095 17 6 11.6671 4.3498 5.4747 18 7 11.4443 5.5645 6.2706 19 6 12.4384 6.0676 7.0667 20 1 13.4736 5.8960 6.8113 21 6 12.1155 6.7982 8.2020 22 7 10.9028 6.7259 8.7082 23 14 13.4022 7.8839 9.0112 24 1 14.6763 7.7902 8.2540 25 1 12.9305 9.2920 9.0149 26 1 13.6231 7.4324 10.4086 27 6 10.1366 6.2304 6.1973 28 6 9.8143 6.5207 4.7269 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3854 2.1161 0.2659 33 1 2.4754 1.4868 -0.9927 34 1 3.2688 3.2697 1.3192 35 1 4.3586 2.6397 0.0607 36 1 5.7798 4.0989 1.8283 37 1 6.4530 2.8856 4.2883 38 1 7.5499 2.2583 3.0346 39 1 8.5653 4.4444 5.4365 40 1 9.3052 3.1902 4.3875 41 1 9.2499 6.5225 2.3190 42 1 10.3796 5.2409 1.8034 43 1 11.3861 3.7337 3.4267 44 1 12.0492 5.3750 3.6158 45 1 12.7105 4.0453 5.5566 46 1 11.0233 3.5499 5.8404 47 1 10.6770 7.2367 9.5013 48 1 10.1709 7.1658 6.7555 49 1 9.3690 5.5811 6.6184 50 1 10.5196 7.2553 4.3382 51 1 8.8004 6.9125 4.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569580191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:08 Heat of formation + Delta-G solvation = -85.925880 kcal Electronic energy + Delta-G solvation = -29479.002729 eV Core-core repulsion = 25379.625923 eV Total energy + Delta-G solvation = -4099.376806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.37158 -39.73782 -38.07532 -36.80831 -34.86985 -34.23380 -33.37987 -31.23572 -30.82942 -29.97156 -28.75728 -26.79525 -26.21840 -25.04424 -23.86455 -22.45327 -21.45373 -20.93513 -20.77408 -20.27196 -18.26524 -17.58308 -17.24366 -16.85910 -16.68784 -16.34874 -15.72730 -15.42832 -15.33070 -14.92577 -14.70407 -14.58778 -13.96708 -13.91494 -13.81754 -13.46543 -13.28788 -12.98569 -12.88068 -12.57974 -12.54429 -12.32120 -12.13691 -11.90185 -11.47309 -11.40653 -11.23814 -11.07070 -10.89471 -10.75459 -10.50458 -10.40031 -10.24115 -10.21247 -9.96905 -9.85458 -9.74703 -9.63485 -9.48276 -9.40108 -9.23080 -8.48579 -6.69140 -5.82078 -3.23696 1.69484 2.43971 2.62594 3.34642 3.43132 3.45063 3.66678 3.88326 4.44231 4.47281 4.59967 4.63288 4.66438 4.74627 4.79295 4.86963 4.92376 5.05125 5.05982 5.11567 5.17947 5.33009 5.39053 5.42984 5.55862 5.60500 5.68811 5.77249 5.88659 5.91835 6.04277 6.12689 6.13747 6.17878 6.20642 6.24408 6.27145 6.45323 6.52486 6.56469 6.64435 6.70901 6.81157 6.91431 7.00445 7.30612 7.31008 7.61543 7.77451 8.04662 8.42312 9.18810 9.82385 10.38786 11.26385 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.001782 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.852329 B =15712.460022 C =16057.723122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.512 3.488 7 O -0.521 6.521 8 N -0.722 5.722 9 C 0.130 3.870 10 C 0.064 3.936 11 H 0.075 0.925 12 C -0.135 4.135 13 C -0.077 4.077 14 C 0.055 3.945 15 O -0.379 6.379 16 C -0.118 4.118 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.171 3.829 28 C -0.129 4.129 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.404 0.596 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.020 0.980 50 H 0.057 0.943 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 -5.067 -18.713 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.296 3.704 7 O -0.395 6.395 8 N -0.376 5.376 9 C 0.007 3.993 10 C 0.006 3.994 11 H 0.093 0.907 12 C -0.173 4.173 13 C -0.077 4.077 14 C -0.021 4.021 15 O -0.299 6.299 16 C -0.158 4.158 17 C 0.018 3.982 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.045 3.955 28 C -0.168 4.168 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.238 0.762 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.951 -6.014 -18.195 24.933 hybrid contribution 0.619 1.429 0.227 1.574 sum -15.332 -4.585 -17.968 24.061 Atomic orbital electron populations 1.23847 0.95493 1.02361 0.99960 1.22718 0.95624 0.98197 1.00272 1.21628 0.88738 0.96276 0.92358 1.88050 1.44313 1.34938 1.60479 1.22193 0.93226 0.89294 0.98819 1.20193 0.82416 0.84011 0.83750 1.90750 1.72147 1.26919 1.49719 1.45798 1.32156 1.17403 1.42259 1.21476 0.88215 0.97409 0.92195 1.23406 0.94464 0.96153 0.85390 0.90747 1.23201 0.94198 1.00209 0.99656 1.21359 0.96222 0.96646 0.93517 1.23366 0.88686 0.93716 0.96373 1.88857 1.42500 1.69427 1.29075 1.21985 0.94581 0.99373 0.99820 1.20928 0.98577 0.89605 0.89047 1.44027 1.12094 1.25103 1.50094 1.19235 0.87619 1.29348 1.01926 0.91688 1.25020 0.96694 1.01937 0.95987 1.70032 1.19508 1.42756 1.22427 0.86253 0.81165 0.80508 0.79028 1.20271 1.21597 1.21747 1.20828 0.86227 0.98665 0.89774 1.22175 0.99626 0.94846 1.00139 0.88400 0.87668 0.86368 0.92510 0.92033 0.90159 0.90088 0.76177 0.89828 0.90502 0.88912 0.90385 0.92550 0.90142 0.92860 0.92185 0.92885 0.96279 0.93702 0.89458 0.96171 0.92383 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.02 0.42 -0.64 16 2 C -0.15 -1.11 9.89 -36.02 -0.36 -1.47 16 3 C 0.09 0.63 6.35 36.01 0.23 0.86 16 4 O -0.36 -3.95 9.86 -55.14 -0.54 -4.49 16 5 C 0.04 0.38 6.42 36.00 0.23 0.61 16 6 C 0.51 6.15 7.91 -10.98 -0.09 6.07 16 7 O -0.52 -8.80 16.50 -14.35 -0.24 -9.04 16 8 N -0.72 -7.40 5.51 -60.29 -0.33 -7.74 16 9 C 0.13 1.54 5.43 -4.04 -0.02 1.52 16 10 C 0.06 0.77 3.39 -25.62 -0.09 0.69 16 11 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 12 C -0.13 -1.93 4.55 -24.93 -0.11 -2.05 16 13 C -0.08 -1.17 0.63 -154.09 -0.10 -1.27 16 14 C 0.06 0.73 7.04 37.47 0.26 0.99 16 15 O -0.38 -4.98 11.20 -35.23 -0.39 -5.37 16 16 C -0.12 -1.94 4.54 -26.87 -0.12 -2.06 16 17 C 0.14 2.91 6.21 -3.66 -0.02 2.89 16 18 N -0.59 -14.17 2.98 -172.19 -0.51 -14.68 16 19 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 22 N -0.90 -25.61 11.19 55.49 0.62 -24.99 16 23 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 C 0.17 3.82 5.01 -3.65 -0.02 3.81 16 28 C -0.13 -2.25 4.67 -26.87 -0.13 -2.37 16 29 H 0.10 0.46 7.90 -52.48 -0.41 0.05 16 30 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.06 0.33 7.86 -51.93 -0.41 -0.08 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 3.12 8.47 -40.82 -0.35 2.78 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.47 6.03 -51.93 -0.31 1.15 16 40 H 0.08 1.12 7.51 -51.93 -0.39 0.73 16 41 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 42 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.02 0.39 7.36 -51.93 -0.38 0.01 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.09 2.24 6.02 -51.93 -0.31 1.93 16 49 H 0.02 0.47 6.45 -51.93 -0.33 0.14 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -32.84 403.58 -9.22 -42.06 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.73 Total: 1.22 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.14 Total: 0.64 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.22 Total: -47.41 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.17 Total: -18.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.84 -9.22 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569580191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.865 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds