Wall clock time and date at job start Tue Mar 31 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99658 * 2 1 4 4 O 1.42900 * 109.47152 * 135.00050 * 3 2 1 5 5 C 1.42894 * 114.00216 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47378 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00027 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00112 * 180.27613 * 6 5 4 9 9 C 1.46495 * 119.99807 * 179.72810 * 8 6 5 10 10 C 1.53008 * 109.46875 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.53924 * 59.29260 * 10 9 8 12 12 C 1.55098 * 110.60432 * 182.14214 * 10 9 8 13 13 C 1.54329 * 101.96306 * 155.15020 * 12 10 9 14 14 C 1.53595 * 104.68404 * 339.36224 * 13 12 10 15 15 O 1.44033 * 107.19484 * 358.03926 * 14 13 12 16 16 C 1.52423 * 110.03650 * 220.64285 * 13 12 10 17 17 C 1.53300 * 109.38724 * 297.91993 * 16 13 12 18 18 N 1.46921 * 108.72953 * 306.30221 * 17 16 13 19 19 C 1.36935 * 120.57024 * 234.15360 * 18 17 16 20 20 H 1.07994 * 120.00415 * 27.86805 * 19 18 17 21 21 C 1.38816 * 119.99459 * 207.86829 * 19 18 17 22 22 N 1.31612 * 120.00198 * 17.44823 * 21 19 18 23 23 Si 1.86798 * 119.99584 * 197.44932 * 21 19 18 24 24 H 1.48503 * 109.47661 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47380 * 120.00363 * 23 21 19 26 26 H 1.48508 * 109.47170 * 239.99825 * 23 21 19 27 27 C 1.46934 * 118.85585 * 54.12473 * 18 17 16 28 28 C 1.52428 * 110.02777 * 98.06178 * 13 12 10 29 29 H 1.08003 * 120.00519 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99881 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00315 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47197 * 14.99677 * 3 2 1 33 33 H 1.09004 * 109.46702 * 254.99866 * 3 2 1 34 34 H 1.08999 * 109.47250 * 59.99685 * 5 4 3 35 35 H 1.09003 * 109.46941 * 299.99977 * 5 4 3 36 36 H 0.97003 * 119.99712 * 359.72217 * 8 6 5 37 37 H 1.09003 * 109.47230 * 299.99008 * 9 8 6 38 38 H 1.08993 * 109.47482 * 59.99716 * 9 8 6 39 39 H 1.09003 * 110.93368 * 273.31436 * 12 10 9 40 40 H 1.08999 * 110.93372 * 36.94817 * 12 10 9 41 41 H 1.08995 * 109.90514 * 117.27795 * 14 13 12 42 42 H 1.08994 * 109.90835 * 238.35013 * 14 13 12 43 43 H 1.08997 * 109.49061 * 57.89710 * 16 13 12 44 44 H 1.08996 * 109.48495 * 177.95225 * 16 13 12 45 45 H 1.09003 * 109.59694 * 186.52406 * 17 16 13 46 46 H 1.09002 * 109.71920 * 66.15109 * 17 16 13 47 47 H 0.96999 * 120.00067 * 180.02562 * 22 21 19 48 48 H 1.08992 * 109.59620 * 186.09829 * 27 18 17 49 49 H 1.08999 * 109.72324 * 65.70637 * 27 18 17 50 50 H 1.09004 * 109.47950 * 182.04050 * 28 13 12 51 51 H 1.08991 * 109.48540 * 302.07135 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9938 2.2571 2.0621 7 8 5.0884 1.2112 2.6688 8 7 5.8557 3.2623 2.3134 9 6 6.9072 3.0914 3.3190 10 6 7.7411 4.3712 3.4075 11 1 7.1124 5.2193 3.6788 12 6 8.8970 4.2001 4.4274 13 6 9.9263 5.2321 3.9204 14 6 9.5393 5.4805 2.4549 15 8 8.4215 4.6220 2.1584 16 6 11.3336 4.6533 4.0095 17 6 11.6671 4.3498 5.4747 18 7 11.4443 5.5645 6.2706 19 6 12.4384 6.0676 7.0667 20 1 13.4736 5.8960 6.8113 21 6 12.1155 6.7982 8.2020 22 7 10.9028 6.7259 8.7082 23 14 13.4022 7.8839 9.0112 24 1 14.6763 7.7902 8.2540 25 1 12.9305 9.2920 9.0149 26 1 13.6231 7.4324 10.4086 27 6 10.1366 6.2304 6.1973 28 6 9.8143 6.5207 4.7269 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3854 2.1161 0.2659 33 1 2.4754 1.4868 -0.9927 34 1 3.2688 3.2697 1.3192 35 1 4.3586 2.6397 0.0607 36 1 5.7798 4.0989 1.8283 37 1 6.4530 2.8856 4.2883 38 1 7.5499 2.2583 3.0346 39 1 8.5653 4.4444 5.4365 40 1 9.3052 3.1902 4.3875 41 1 9.2499 6.5225 2.3190 42 1 10.3796 5.2409 1.8034 43 1 11.3861 3.7337 3.4267 44 1 12.0492 5.3750 3.6158 45 1 12.7105 4.0453 5.5566 46 1 11.0233 3.5499 5.8404 47 1 10.6770 7.2367 9.5013 48 1 10.1709 7.1658 6.7555 49 1 9.3690 5.5811 6.6184 50 1 10.5196 7.2553 4.3382 51 1 8.8004 6.9125 4.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569580191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:07 Heat of formation + Delta-G solvation = -107.625876 kcal Electronic energy + Delta-G solvation = -29479.943711 eV Core-core repulsion = 25379.625923 eV Total energy + Delta-G solvation = -4100.317788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50603 -40.70584 -38.79538 -38.24567 -35.92425 -35.02109 -34.75915 -32.76734 -32.04755 -31.59952 -29.53898 -28.36565 -26.95699 -25.89589 -25.52279 -23.99628 -22.73662 -22.15314 -21.75037 -20.84800 -19.78207 -18.53195 -18.32009 -17.98220 -17.55681 -17.31536 -16.83985 -16.57906 -16.42776 -16.21946 -15.69850 -15.54573 -15.51313 -15.37109 -14.89176 -14.70657 -14.49002 -14.22119 -14.01573 -13.80235 -13.45316 -13.22726 -13.17643 -13.06573 -13.02308 -12.84848 -12.57990 -12.53792 -12.28325 -12.08617 -11.89869 -11.85643 -11.82705 -11.47156 -11.09097 -11.04831 -10.98802 -10.85379 -10.58414 -10.48404 -10.26223 -10.16478 -8.64768 -7.86997 -5.31066 1.19738 1.45024 1.47622 1.55171 1.57520 1.87652 2.51349 2.79564 3.10026 3.26592 3.52163 3.70409 3.71497 3.77463 3.90130 4.06292 4.07938 4.09437 4.17706 4.23438 4.26275 4.29779 4.41247 4.47249 4.50915 4.60523 4.61734 4.68408 4.72158 4.77419 4.81653 4.88899 4.95439 4.98924 5.01457 5.06267 5.19149 5.31416 5.33874 5.37261 5.40066 5.54038 5.66471 5.66566 5.70364 5.79631 5.92281 6.08858 6.40426 6.53229 7.16887 7.20330 7.89096 8.39532 9.18839 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.001782 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.852329 B =15712.460022 C =16057.723122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.399 6.399 5 C 0.048 3.952 6 C 0.506 3.494 7 O -0.579 6.579 8 N -0.708 5.708 9 C 0.134 3.866 10 C 0.078 3.922 11 H 0.091 0.909 12 C -0.135 4.135 13 C -0.076 4.076 14 C 0.063 3.937 15 O -0.379 6.379 16 C -0.107 4.107 17 C 0.140 3.860 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.063 0.937 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.294 1.294 27 C 0.177 3.823 28 C -0.114 4.114 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.420 0.580 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.014 0.986 47 H 0.249 0.751 48 H 0.050 0.950 49 H 0.003 0.997 50 H 0.053 0.947 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -3.992 -21.340 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.318 6.318 5 C -0.032 4.032 6 C 0.293 3.707 7 O -0.459 6.459 8 N -0.362 5.362 9 C 0.010 3.990 10 C 0.021 3.979 11 H 0.108 0.892 12 C -0.173 4.173 13 C -0.076 4.076 14 C -0.013 4.013 15 O -0.299 6.299 16 C -0.146 4.146 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.791 3.209 24 H -0.192 1.192 25 H -0.216 1.216 26 H -0.222 1.222 27 C 0.051 3.949 28 C -0.153 4.153 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.257 0.743 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.032 0.968 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.021 0.979 50 H 0.072 0.928 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.805 -4.911 -20.877 27.247 hybrid contribution 0.869 1.026 1.062 1.713 sum -15.936 -3.884 -19.816 25.724 Atomic orbital electron populations 1.24059 0.95023 1.03509 0.97814 1.22803 0.96352 0.98157 1.02342 1.21800 0.88293 0.96575 0.92484 1.88001 1.45542 1.36497 1.61808 1.22328 0.92541 0.89438 0.98844 1.20969 0.82874 0.83143 0.83687 1.90724 1.73778 1.29251 1.52100 1.45671 1.31163 1.17818 1.41591 1.21308 0.88455 0.96803 0.92470 1.23283 0.93653 0.96658 0.84337 0.89156 1.23126 0.95059 0.99800 0.99357 1.21302 0.95784 0.95441 0.95097 1.23287 0.89165 0.94548 0.94337 1.88866 1.42453 1.69510 1.29025 1.21848 0.95287 1.00555 0.96933 1.21064 0.98251 0.88152 0.91023 1.44285 1.12012 1.26582 1.50289 1.19535 0.88329 1.29145 1.02155 0.91901 1.25722 0.98496 1.03416 0.96807 1.70178 1.21224 1.43723 1.22840 0.85276 0.79312 0.78543 0.77727 1.19227 1.21599 1.22159 1.20647 0.85293 0.96289 0.92629 1.21959 1.00616 0.96085 0.96654 0.86895 0.86873 0.87753 0.90693 0.90435 0.86939 0.87094 0.74317 0.90386 0.91981 0.90802 0.90620 0.91139 0.88890 0.90505 0.92221 0.93399 0.96773 0.94178 0.93196 0.97907 0.92780 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 14.31 67.78 0.97 -0.74 16 2 C -0.18 -2.52 9.89 25.65 0.25 -2.27 16 3 C 0.08 1.07 6.35 71.24 0.45 1.53 16 4 O -0.40 -8.32 9.86 -129.94 -1.28 -9.60 16 5 C 0.05 0.68 6.42 71.23 0.46 1.14 16 6 C 0.51 11.59 7.91 87.65 0.69 12.28 16 7 O -0.58 -19.90 16.50 16.01 0.26 -19.64 16 8 N -0.71 -13.10 5.51 -463.06 -2.55 -15.65 16 9 C 0.13 3.01 5.43 86.38 0.47 3.48 16 10 C 0.08 1.72 3.39 31.32 0.11 1.83 16 11 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.14 -3.74 4.55 31.76 0.14 -3.59 16 13 C -0.08 -2.16 0.63 -51.91 -0.03 -2.19 16 14 C 0.06 1.44 7.04 72.18 0.51 1.95 16 15 O -0.38 -8.63 11.20 -148.98 -1.67 -10.30 16 16 C -0.11 -3.33 4.54 30.50 0.14 -3.19 16 17 C 0.14 5.65 6.21 86.40 0.54 6.18 16 18 N -0.61 -29.66 2.98 -698.68 -2.09 -31.74 16 19 C -0.26 -14.23 9.58 84.03 0.80 -13.43 16 20 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 21 C -0.05 -2.71 4.90 84.86 0.42 -2.30 16 22 N -0.93 -54.58 11.19 21.65 0.24 -54.34 16 23 Si 0.96 44.57 29.59 68.60 2.03 46.60 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C 0.18 8.09 5.01 86.40 0.43 8.52 16 28 C -0.11 -3.85 4.67 30.50 0.14 -3.71 16 29 H 0.11 0.79 7.90 -2.91 -0.02 0.77 16 30 H 0.11 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.10 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.07 0.65 7.86 -2.39 -0.02 0.63 16 33 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 5.10 8.47 -92.71 -0.79 4.32 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 2.35 6.03 -2.39 -0.01 2.33 16 40 H 0.08 2.12 7.51 -2.39 -0.02 2.10 16 41 H 0.07 1.47 7.68 -2.39 -0.02 1.45 16 42 H 0.09 1.96 7.68 -2.39 -0.02 1.94 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 46 H 0.01 0.59 7.36 -2.39 -0.02 0.57 16 47 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.05 2.65 6.02 -2.39 -0.01 2.63 16 49 H 0.00 0.14 6.45 -2.39 -0.02 0.13 16 50 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 51 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.03 403.58 1.57 -72.46 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.12 Total: 16.70 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.49 Total: 5.49 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -4.39 Total: -101.72 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.69 Total: -39.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -74.03 1.57 -72.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569580191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.165 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds