Wall clock time and date at job start Tue Mar 31 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00085 * 2 1 4 4 O 1.42899 * 109.47163 * 135.00035 * 3 2 1 5 5 C 1.42905 * 113.99778 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46972 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00041 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00037 * 179.97438 * 6 5 4 9 9 C 1.46929 * 120.56364 * 359.72625 * 8 6 5 10 10 C 1.52862 * 108.94709 * 234.10840 * 9 8 6 11 11 C 1.52414 * 109.45472 * 306.53062 * 10 9 8 12 12 C 1.53979 * 110.24314 * 297.32550 * 11 10 9 13 13 O 1.44545 * 104.69435 * 265.10597 * 12 11 10 14 14 C 1.44474 * 105.36169 * 319.97732 * 13 12 11 15 15 H 1.09003 * 110.36862 * 281.33935 * 14 13 12 16 16 C 1.53004 * 110.36807 * 159.11969 * 14 13 12 17 17 N 1.46499 * 109.46870 * 66.45493 * 16 14 13 18 18 C 1.36936 * 119.99520 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00068 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00522 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99557 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47164 * 90.00445 * 22 20 18 24 24 H 1.48510 * 109.47090 * 210.00125 * 22 20 18 25 25 H 1.48499 * 109.47605 * 330.00023 * 22 20 18 26 26 C 1.53983 * 110.27851 * 182.34785 * 11 10 9 27 27 C 1.52406 * 111.00568 * 59.80556 * 11 10 9 28 28 C 1.46923 * 120.56537 * 179.97438 * 8 6 5 29 29 H 1.08001 * 120.00250 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99986 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99588 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46854 * 14.99782 * 3 2 1 33 33 H 1.08997 * 109.47005 * 255.00048 * 3 2 1 34 34 H 1.09004 * 109.47054 * 299.99711 * 5 4 3 35 35 H 1.09000 * 109.47187 * 59.99767 * 5 4 3 36 36 H 1.09001 * 109.59431 * 353.91887 * 9 8 6 37 37 H 1.08994 * 109.59742 * 114.38972 * 9 8 6 38 38 H 1.08998 * 109.55678 * 186.46795 * 10 9 8 39 39 H 1.09008 * 109.34830 * 66.46152 * 10 9 8 40 40 H 1.08998 * 110.39211 * 23.90924 * 12 11 10 41 41 H 1.08998 * 110.39021 * 146.30299 * 12 11 10 42 42 H 1.09007 * 109.46749 * 186.45083 * 16 14 13 43 43 H 1.08993 * 109.46802 * 306.45221 * 16 14 13 44 44 H 0.96996 * 120.00243 * 359.97438 * 17 16 14 45 45 H 0.96995 * 120.00366 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.54582 * 237.23435 * 26 11 10 47 47 H 1.09008 * 110.54563 * 0.03322 * 26 11 10 48 48 H 1.08998 * 109.48361 * 180.10773 * 27 11 10 49 49 H 1.08989 * 109.50310 * 60.06352 * 27 11 10 50 50 H 1.09005 * 109.59413 * 245.62304 * 28 8 6 51 51 H 1.08992 * 109.59538 * 6.07719 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4353 1.0328 6 6 4.9933 2.2573 2.0628 7 8 5.0885 1.2111 2.6689 8 7 5.8584 3.2606 2.3104 9 6 5.7582 4.5311 1.5792 10 6 7.1104 4.8428 0.9381 11 6 8.1998 4.7965 2.0030 12 6 7.9493 5.8792 3.0688 13 8 8.7483 7.0056 2.6421 14 6 9.9858 6.4365 2.1605 15 1 10.6336 6.1743 2.9970 16 6 10.6955 7.4185 1.2261 17 7 11.1267 8.5929 1.9883 18 6 11.7878 9.6131 1.3580 19 1 11.9917 9.5518 0.2992 20 6 12.1969 10.7258 2.0802 21 7 12.8319 11.7066 1.4744 22 14 11.8450 10.8316 3.9117 23 1 12.9747 10.2340 4.6682 24 1 11.6848 12.2550 4.3036 25 1 10.5958 10.0899 4.2195 26 6 9.5627 5.1655 1.3886 27 6 8.2689 3.4205 2.6546 28 6 6.9211 3.1007 3.3123 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3855 2.1160 0.2659 33 1 2.4755 1.4867 -0.9926 34 1 4.3580 2.6408 0.0616 35 1 3.2677 3.2695 1.3204 36 1 4.9978 4.4470 0.8027 37 1 5.4915 5.3306 2.2703 38 1 7.0816 5.8361 0.4903 39 1 7.3239 4.1022 0.1672 40 1 6.8938 6.1502 3.0942 41 1 8.2766 5.5308 4.0484 42 1 11.5653 6.9337 0.7825 43 1 10.0105 7.7287 0.4371 44 1 10.9433 8.6482 2.9391 45 1 13.1181 12.4839 1.9791 46 1 10.2837 4.3636 1.5476 47 1 9.4572 5.3811 0.3253 48 1 9.0529 3.4157 3.4117 49 1 8.4910 2.6697 1.8964 50 1 6.7472 3.7857 4.1422 51 1 6.9271 2.0740 3.6781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700624800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:14 Heat of formation + Delta-G solvation = -83.349377 kcal Electronic energy + Delta-G solvation = -29661.085382 eV Core-core repulsion = 25561.820302 eV Total energy + Delta-G solvation = -4099.265080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13624 -39.76157 -38.26263 -36.97361 -34.70905 -34.34309 -33.63518 -31.83446 -31.73540 -30.13521 -28.95340 -27.22117 -25.97652 -25.51424 -24.03491 -23.54244 -21.97230 -20.90272 -20.71402 -20.27865 -18.68831 -17.90516 -17.59063 -16.94565 -16.88057 -16.34525 -16.00871 -15.72784 -15.47649 -15.36724 -14.98702 -14.58153 -14.33195 -14.13825 -14.10105 -13.71036 -13.42966 -13.26077 -13.02077 -12.90162 -12.64992 -12.61950 -12.58097 -12.24021 -11.96785 -11.76807 -11.60935 -11.47826 -11.42611 -11.24706 -10.85542 -10.67847 -10.55226 -10.49690 -10.33985 -10.11153 -10.05662 -9.82976 -9.56305 -9.52039 -9.01078 -8.88185 -7.19773 -5.74064 -3.08926 1.61629 2.21719 2.34639 3.39431 3.41513 3.47852 3.48804 3.93813 4.05563 4.22258 4.27684 4.46229 4.54664 4.59799 4.61561 4.63626 4.66331 4.67637 4.73444 4.83476 4.87437 4.91456 4.98615 5.05724 5.10725 5.21808 5.30161 5.32649 5.36235 5.45497 5.54799 5.59394 5.63613 5.66082 5.73464 5.77967 5.84818 5.91201 5.97225 6.06203 6.07088 6.11272 6.16285 6.46187 6.54712 6.63286 6.95864 7.09325 7.79243 8.01489 8.44830 9.24744 9.97313 10.17721 11.44292 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.001877 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.286614 B =14913.541746 C =15189.398348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.521 6.521 8 N -0.610 5.610 9 C 0.101 3.899 10 C -0.120 4.120 11 C -0.091 4.091 12 C 0.048 3.952 13 O -0.356 6.356 14 C 0.066 3.934 15 H 0.067 0.933 16 C 0.165 3.835 17 N -0.752 5.752 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.273 1.273 26 C -0.137 4.137 27 C -0.119 4.119 28 C 0.111 3.889 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.033 0.967 44 H 0.364 0.636 45 H 0.259 0.741 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 -22.788 -2.029 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.279 6.279 5 C -0.035 4.035 6 C 0.304 3.696 7 O -0.396 6.396 8 N -0.345 5.345 9 C -0.021 4.021 10 C -0.158 4.158 11 C -0.091 4.091 12 C -0.029 4.029 13 O -0.275 6.275 14 C 0.008 3.992 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.398 5.398 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.199 1.199 26 C -0.175 4.175 27 C -0.157 4.157 28 C -0.011 4.011 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.197 0.803 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.049 -23.159 -1.764 32.025 hybrid contribution -0.148 0.367 1.048 1.120 sum -22.197 -22.792 -0.717 31.823 Atomic orbital electron populations 1.23859 0.95491 1.02413 0.99775 1.22703 0.95621 0.98133 1.00445 1.21633 0.88677 0.96341 0.92334 1.88042 1.44389 1.34870 1.60581 1.22257 0.93221 0.89308 0.98746 1.20189 0.82337 0.83475 0.83568 1.90729 1.72171 1.26649 1.50020 1.48048 1.31308 1.14586 1.40604 1.21863 0.98565 0.85488 0.96224 1.21804 0.93091 1.03311 0.97571 1.21486 0.95880 0.95576 0.96186 1.23526 0.96782 0.86525 0.96069 1.89319 1.27801 1.27924 1.82465 1.23373 0.86776 0.92719 0.96338 0.91541 1.20706 0.95371 0.87208 0.92954 1.42627 1.69971 1.19394 1.07798 1.19058 1.27779 0.95433 0.95111 0.89274 1.24650 1.00379 0.96489 0.97566 1.69700 1.44426 1.09037 1.35167 0.86554 0.78263 0.76934 0.86980 1.21161 1.21752 1.19912 1.22990 0.95341 0.97942 1.01218 1.21917 0.96982 0.96121 1.00728 1.21685 0.85654 1.03558 0.90171 0.88360 0.87635 0.86386 0.92462 0.91971 0.90054 0.90122 0.89707 0.90412 0.89355 0.91059 0.89409 0.92499 0.94337 0.94876 0.80303 0.93105 0.90372 0.90025 0.90104 0.90999 0.91074 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 14.31 29.01 0.42 -0.51 16 2 C -0.15 -1.00 9.89 -36.03 -0.36 -1.36 16 3 C 0.09 0.56 6.35 36.00 0.23 0.79 16 4 O -0.36 -3.58 9.86 -55.14 -0.54 -4.12 16 5 C 0.04 0.33 4.76 36.01 0.17 0.50 16 6 C 0.52 5.39 7.77 -10.99 -0.09 5.30 16 7 O -0.52 -7.71 15.90 -14.35 -0.23 -7.94 16 8 N -0.61 -5.12 2.97 -172.88 -0.51 -5.63 16 9 C 0.10 0.64 6.01 -3.88 -0.02 0.62 16 10 C -0.12 -0.91 4.67 -27.10 -0.13 -1.04 16 11 C -0.09 -0.83 0.68 -154.09 -0.11 -0.93 16 12 C 0.05 0.53 5.63 37.67 0.21 0.74 16 13 O -0.36 -5.75 11.33 -35.23 -0.40 -6.15 16 14 C 0.07 1.00 3.33 -25.88 -0.09 0.91 16 15 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 16 C 0.16 3.18 5.88 -4.04 -0.02 3.15 16 17 N -0.75 -18.43 5.39 -59.91 -0.32 -18.75 16 18 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 21 N -0.94 -29.73 13.97 55.49 0.78 -28.95 16 22 Si 0.88 22.62 27.73 -169.99 -4.71 17.90 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 25 H -0.27 -6.73 6.52 56.52 0.37 -6.37 16 26 C -0.14 -1.49 5.91 -25.37 -0.15 -1.64 16 27 C -0.12 -0.96 4.55 -26.86 -0.12 -1.09 16 28 C 0.11 0.94 6.14 -3.64 -0.02 0.92 16 29 H 0.10 0.41 7.90 -52.49 -0.41 -0.01 16 30 H 0.11 0.43 8.06 -52.48 -0.42 0.01 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.06 0.29 7.86 -51.93 -0.41 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 35 H 0.08 0.41 7.94 -51.93 -0.41 0.00 16 36 H 0.08 0.35 5.92 -51.93 -0.31 0.04 16 37 H 0.08 0.47 6.44 -51.93 -0.33 0.14 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 40 H 0.09 0.85 6.00 -51.93 -0.31 0.54 16 41 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 42 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.36 8.89 5.53 -40.82 -0.23 8.66 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 47 H 0.08 0.88 7.45 -51.92 -0.39 0.49 16 48 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 49 H 0.07 0.60 8.14 -51.94 -0.42 0.18 16 50 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 51 H 0.09 0.93 6.99 -51.93 -0.36 0.57 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -36.85 399.94 -8.82 -45.67 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.57 Total: 2.74 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.33 Total: -0.79 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.06 Total: -53.34 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.17 Total: -18.21 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.85 -8.82 -45.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700624800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.684 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds