Wall clock time and date at job start Tue Mar 31 2020 22:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00085 * 2 1 4 4 O 1.42899 * 109.47163 * 135.00035 * 3 2 1 5 5 C 1.42905 * 113.99778 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46972 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00041 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00037 * 179.97438 * 6 5 4 9 9 C 1.46929 * 120.56364 * 359.72625 * 8 6 5 10 10 C 1.52862 * 108.94709 * 234.10840 * 9 8 6 11 11 C 1.52414 * 109.45472 * 306.53062 * 10 9 8 12 12 C 1.53979 * 110.24314 * 297.32550 * 11 10 9 13 13 O 1.44545 * 104.69435 * 265.10597 * 12 11 10 14 14 C 1.44474 * 105.36169 * 319.97732 * 13 12 11 15 15 H 1.09003 * 110.36862 * 281.33935 * 14 13 12 16 16 C 1.53004 * 110.36807 * 159.11969 * 14 13 12 17 17 N 1.46499 * 109.46870 * 66.45493 * 16 14 13 18 18 C 1.36936 * 119.99520 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00068 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00522 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99557 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47164 * 90.00445 * 22 20 18 24 24 H 1.48510 * 109.47090 * 210.00125 * 22 20 18 25 25 H 1.48499 * 109.47605 * 330.00023 * 22 20 18 26 26 C 1.53983 * 110.27851 * 182.34785 * 11 10 9 27 27 C 1.52406 * 111.00568 * 59.80556 * 11 10 9 28 28 C 1.46923 * 120.56537 * 179.97438 * 8 6 5 29 29 H 1.08001 * 120.00250 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99986 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99588 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46854 * 14.99782 * 3 2 1 33 33 H 1.08997 * 109.47005 * 255.00048 * 3 2 1 34 34 H 1.09004 * 109.47054 * 299.99711 * 5 4 3 35 35 H 1.09000 * 109.47187 * 59.99767 * 5 4 3 36 36 H 1.09001 * 109.59431 * 353.91887 * 9 8 6 37 37 H 1.08994 * 109.59742 * 114.38972 * 9 8 6 38 38 H 1.08998 * 109.55678 * 186.46795 * 10 9 8 39 39 H 1.09008 * 109.34830 * 66.46152 * 10 9 8 40 40 H 1.08998 * 110.39211 * 23.90924 * 12 11 10 41 41 H 1.08998 * 110.39021 * 146.30299 * 12 11 10 42 42 H 1.09007 * 109.46749 * 186.45083 * 16 14 13 43 43 H 1.08993 * 109.46802 * 306.45221 * 16 14 13 44 44 H 0.96996 * 120.00243 * 359.97438 * 17 16 14 45 45 H 0.96995 * 120.00366 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.54582 * 237.23435 * 26 11 10 47 47 H 1.09008 * 110.54563 * 0.03322 * 26 11 10 48 48 H 1.08998 * 109.48361 * 180.10773 * 27 11 10 49 49 H 1.08989 * 109.50310 * 60.06352 * 27 11 10 50 50 H 1.09005 * 109.59413 * 245.62304 * 28 8 6 51 51 H 1.08992 * 109.59538 * 6.07719 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4353 1.0328 6 6 4.9933 2.2573 2.0628 7 8 5.0885 1.2111 2.6689 8 7 5.8584 3.2606 2.3104 9 6 5.7582 4.5311 1.5792 10 6 7.1104 4.8428 0.9381 11 6 8.1998 4.7965 2.0030 12 6 7.9493 5.8792 3.0688 13 8 8.7483 7.0056 2.6421 14 6 9.9858 6.4365 2.1605 15 1 10.6336 6.1743 2.9970 16 6 10.6955 7.4185 1.2261 17 7 11.1267 8.5929 1.9883 18 6 11.7878 9.6131 1.3580 19 1 11.9917 9.5518 0.2992 20 6 12.1969 10.7258 2.0802 21 7 12.8319 11.7066 1.4744 22 14 11.8450 10.8316 3.9117 23 1 12.9747 10.2340 4.6682 24 1 11.6848 12.2550 4.3036 25 1 10.5958 10.0899 4.2195 26 6 9.5627 5.1655 1.3886 27 6 8.2689 3.4205 2.6546 28 6 6.9211 3.1007 3.3123 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3855 2.1160 0.2659 33 1 2.4755 1.4867 -0.9926 34 1 4.3580 2.6408 0.0616 35 1 3.2677 3.2695 1.3204 36 1 4.9978 4.4470 0.8027 37 1 5.4915 5.3306 2.2703 38 1 7.0816 5.8361 0.4903 39 1 7.3239 4.1022 0.1672 40 1 6.8938 6.1502 3.0942 41 1 8.2766 5.5308 4.0484 42 1 11.5653 6.9337 0.7825 43 1 10.0105 7.7287 0.4371 44 1 10.9433 8.6482 2.9391 45 1 13.1181 12.4839 1.9791 46 1 10.2837 4.3636 1.5476 47 1 9.4572 5.3811 0.3253 48 1 9.0529 3.4157 3.4117 49 1 8.4910 2.6697 1.8964 50 1 6.7472 3.7857 4.1422 51 1 6.9271 2.0740 3.6781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700624800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:13 Heat of formation + Delta-G solvation = -108.799914 kcal Electronic energy + Delta-G solvation = -29662.189000 eV Core-core repulsion = 25561.820302 eV Total energy + Delta-G solvation = -4100.368698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90378 -40.60422 -38.88291 -37.88956 -36.50463 -34.81360 -34.47971 -33.69968 -32.44356 -31.50108 -29.69436 -28.13137 -26.78519 -26.47766 -25.00061 -24.29650 -23.56977 -22.19266 -21.32107 -20.83280 -19.73836 -19.37247 -18.52240 -17.54346 -17.45115 -17.17188 -17.01382 -16.61685 -16.43929 -16.31172 -16.16240 -15.67314 -15.45082 -15.05113 -14.83915 -14.73124 -14.64636 -14.13904 -14.05640 -13.95140 -13.76792 -13.61539 -13.31570 -13.15319 -13.10141 -12.93987 -12.82864 -12.45272 -12.24072 -12.16790 -12.06675 -11.89519 -11.86160 -11.60453 -11.39177 -11.28611 -11.01296 -10.99960 -10.78852 -10.60659 -10.26797 -9.70523 -9.30185 -8.03332 -5.36073 1.18150 1.37984 1.40722 1.49190 1.49629 1.75507 2.48472 2.89408 2.95245 3.28987 3.41319 3.50128 3.55062 3.70748 3.81610 4.00424 4.05662 4.06442 4.12550 4.17742 4.19872 4.21632 4.24470 4.26993 4.36851 4.44684 4.50747 4.53921 4.59836 4.62697 4.67356 4.75635 4.82701 4.91248 4.93328 4.97662 5.01061 5.03888 5.09653 5.20037 5.23261 5.31384 5.49576 5.65512 5.69598 5.73861 6.00766 6.06274 6.20792 6.32864 7.07424 7.08541 7.84200 8.03108 9.18066 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.001877 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.286614 B =14913.541746 C =15189.398348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.397 6.397 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.604 5.604 9 C 0.100 3.900 10 C -0.118 4.118 11 C -0.082 4.082 12 C 0.043 3.957 13 O -0.390 6.390 14 C 0.071 3.929 15 H 0.067 0.933 16 C 0.159 3.841 17 N -0.757 5.757 18 C -0.237 4.237 19 H 0.059 0.941 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.257 1.257 26 C -0.129 4.129 27 C -0.110 4.110 28 C 0.110 3.890 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.142 -23.583 -1.562 33.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.317 6.317 5 C -0.035 4.035 6 C 0.299 3.701 7 O -0.456 6.456 8 N -0.338 5.338 9 C -0.021 4.021 10 C -0.156 4.156 11 C -0.082 4.082 12 C -0.033 4.033 13 O -0.310 6.310 14 C 0.013 3.987 15 H 0.085 0.915 16 C 0.033 3.967 17 N -0.402 5.402 18 C -0.367 4.367 19 H 0.077 0.923 20 C -0.253 4.253 21 N -0.633 5.633 22 Si 0.781 3.219 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.182 1.182 26 C -0.167 4.167 27 C -0.148 4.148 28 C -0.013 4.013 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.199 0.801 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.038 -23.975 -1.317 33.976 hybrid contribution 0.439 0.589 0.809 1.092 sum -23.598 -23.386 -0.509 33.227 Atomic orbital electron populations 1.24063 0.95067 1.03496 0.97807 1.22791 0.96308 0.98130 1.02347 1.21790 0.88304 0.96595 0.92458 1.87999 1.45514 1.36395 1.61766 1.22420 0.92741 0.89372 0.98963 1.20834 0.82869 0.82848 0.83515 1.90702 1.73750 1.28858 1.52250 1.48125 1.30586 1.14891 1.40172 1.22043 0.98658 0.84474 0.96965 1.21788 0.93172 1.03366 0.97247 1.21417 0.95420 0.95345 0.96042 1.23764 0.96945 0.85762 0.96811 1.89271 1.28353 1.30476 1.82888 1.23233 0.86641 0.92864 0.95960 0.91485 1.20912 0.95815 0.86465 0.93528 1.42674 1.69601 1.19853 1.08112 1.19077 1.27114 0.96525 0.94026 0.92341 1.25474 1.00912 0.96284 1.02666 1.69874 1.46343 1.09914 1.37184 0.85414 0.78853 0.76782 0.80811 1.20189 1.22042 1.18189 1.22950 0.96679 0.96238 1.00823 1.21838 0.96901 0.95326 1.00776 1.21672 0.86056 1.02843 0.90693 0.86986 0.86846 0.87649 0.90793 0.90540 0.87369 0.87336 0.86837 0.89638 0.89726 0.90336 0.87921 0.91805 0.93708 0.95564 0.80117 0.93303 0.88792 0.89803 0.89467 0.91027 0.90161 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 14.31 67.78 0.97 -0.52 16 2 C -0.18 -2.23 9.89 25.65 0.25 -1.98 16 3 C 0.08 0.95 6.35 71.24 0.45 1.40 16 4 O -0.40 -7.41 9.86 -129.94 -1.28 -8.69 16 5 C 0.04 0.54 4.76 71.24 0.34 0.88 16 6 C 0.51 9.89 7.77 87.66 0.68 10.57 16 7 O -0.58 -17.20 15.90 16.00 0.25 -16.94 16 8 N -0.60 -8.72 2.97 -819.26 -2.43 -11.15 16 9 C 0.10 0.91 6.01 86.25 0.52 1.43 16 10 C -0.12 -1.42 4.67 30.35 0.14 -1.27 16 11 C -0.08 -1.27 0.68 -51.91 -0.04 -1.30 16 12 C 0.04 0.84 5.63 72.31 0.41 1.25 16 13 O -0.39 -11.82 11.33 -148.98 -1.69 -13.50 16 14 C 0.07 2.01 3.33 31.14 0.10 2.12 16 15 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.16 6.00 5.88 86.38 0.51 6.51 16 17 N -0.76 -36.67 5.39 -343.45 -1.85 -38.52 16 18 C -0.24 -13.84 10.47 84.03 0.88 -12.96 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 21 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 22 Si 0.95 46.74 27.73 68.60 1.90 48.65 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.26 -11.76 6.52 99.48 0.65 -11.12 16 26 C -0.13 -2.49 5.91 31.47 0.19 -2.30 16 27 C -0.11 -1.52 4.55 30.51 0.14 -1.38 16 28 C 0.11 1.67 6.14 86.41 0.53 2.20 16 29 H 0.11 0.67 7.90 -2.91 -0.02 0.64 16 30 H 0.11 0.78 8.06 -2.91 -0.02 0.75 16 31 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.07 0.55 7.86 -2.39 -0.02 0.53 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.71 7.69 -2.38 -0.02 0.69 16 35 H 0.11 0.69 7.94 -2.39 -0.02 0.67 16 36 H 0.11 0.42 5.92 -2.39 -0.01 0.40 16 37 H 0.09 0.71 6.44 -2.39 -0.02 0.69 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.10 1.66 6.00 -2.39 -0.01 1.65 16 41 H 0.06 1.15 7.70 -2.39 -0.02 1.13 16 42 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.37 17.32 5.53 -92.71 -0.51 16.81 16 45 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.09 1.54 7.71 -2.39 -0.02 1.52 16 47 H 0.08 1.60 7.45 -2.38 -0.02 1.59 16 48 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 1.07 7.45 -2.38 -0.02 1.06 16 51 H 0.08 1.50 6.99 -2.39 -0.02 1.48 16 Total: -1.00 -82.38 399.94 2.09 -80.29 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.34 Total: 21.93 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 6.54 Total: 1.38 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -3.98 Total: -113.11 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -2.71 Total: -39.14 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.65 kcal Total: -82.38 2.09 -80.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700624800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.510 kcal (2) G-P(sol) polarization free energy of solvation -82.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds