Wall clock time and date at job start Tue Mar 31 2020 22:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47140 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00301 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.58713 * 359.71321 * 8 6 5 10 10 C 1.52845 * 108.95312 * 234.16850 * 9 8 6 11 11 C 1.52429 * 109.48950 * 306.50261 * 10 9 8 12 12 C 1.53602 * 110.43916 * 296.88216 * 11 10 9 13 13 O 1.43896 * 107.11415 * 239.50315 * 12 11 10 14 14 C 1.44421 * 106.99916 * 26.36484 * 13 12 11 15 15 H 1.09000 * 110.60631 * 78.92343 * 14 13 12 16 16 C 1.52999 * 110.60710 * 201.74065 * 14 13 12 17 17 N 1.46504 * 109.46768 * 298.54641 * 16 14 13 18 18 C 1.36940 * 119.99502 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00495 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99501 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00290 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99809 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46964 * 90.00187 * 22 20 18 24 24 H 1.48504 * 109.47115 * 209.99936 * 22 20 18 25 25 H 1.48503 * 109.47201 * 329.99794 * 22 20 18 26 26 C 1.54319 * 110.04025 * 181.80660 * 11 10 9 27 27 C 1.52423 * 110.98291 * 59.74014 * 11 10 9 28 28 C 1.46928 * 120.58964 * 179.97438 * 8 6 5 29 29 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 33 33 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 34 34 H 1.09007 * 109.47484 * 299.99646 * 5 4 3 35 35 H 1.09004 * 109.47459 * 59.99983 * 5 4 3 36 36 H 1.09002 * 109.59653 * 353.98393 * 9 8 6 37 37 H 1.08995 * 109.59378 * 114.44380 * 9 8 6 38 38 H 1.09002 * 109.55130 * 186.43648 * 10 9 8 39 39 H 1.09006 * 109.34787 * 66.44069 * 10 9 8 40 40 H 1.08997 * 109.91176 * 358.87609 * 12 11 10 41 41 H 1.09008 * 109.90557 * 119.95229 * 12 11 10 42 42 H 1.09001 * 109.46860 * 58.54610 * 16 14 13 43 43 H 1.08997 * 109.46959 * 178.54992 * 16 14 13 44 44 H 0.96993 * 119.99791 * 359.97438 * 17 16 14 45 45 H 0.97004 * 120.00004 * 179.97438 * 21 20 18 46 46 H 1.09007 * 110.92687 * 216.20481 * 26 11 10 47 47 H 1.09000 * 110.93215 * 339.86846 * 26 11 10 48 48 H 1.09001 * 109.48168 * 180.17168 * 27 11 10 49 49 H 1.08993 * 109.49195 * 60.14522 * 27 11 10 50 50 H 1.08996 * 109.59277 * 245.57110 * 28 8 6 51 51 H 1.08996 * 109.59645 * 6.03030 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0897 1.2105 2.6675 8 7 5.8597 3.2600 2.3089 9 6 5.7596 4.5309 1.5784 10 6 7.1111 4.8420 0.9358 11 6 8.2024 4.7953 1.9989 12 6 7.9652 5.8811 3.0592 13 8 9.1234 6.7350 3.0574 14 6 9.7065 6.6529 1.7387 15 1 9.1532 7.2750 1.0352 16 6 11.1799 7.0634 1.7749 17 7 11.2885 8.4535 2.2247 18 6 12.5196 9.0430 2.3355 19 1 13.4103 8.4831 2.0916 20 6 12.6225 10.3601 2.7612 21 7 11.5369 11.0426 3.0579 22 14 14.3018 11.1641 2.9130 23 1 14.6579 11.8132 1.6257 24 1 14.2656 12.1865 3.9895 25 1 15.3167 10.1319 3.2445 26 6 9.5668 5.1522 1.3723 27 6 8.2706 3.4194 2.6512 28 6 6.9233 3.1002 3.3099 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 2.4755 1.4868 -0.9927 33 1 1.3855 2.1161 0.2660 34 1 4.3587 2.6397 0.0608 35 1 3.2688 3.2697 1.3192 36 1 4.9982 4.4478 0.8029 37 1 5.4942 5.3302 2.2702 38 1 7.0821 5.8354 0.4881 39 1 7.3232 4.1015 0.1645 40 1 7.0770 6.4598 2.8056 41 1 7.8410 5.4215 4.0398 42 1 11.7209 6.4151 2.4642 43 1 11.6076 6.9701 0.7767 44 1 10.4885 8.9563 2.4434 45 1 11.6089 11.9630 3.3558 46 1 10.3674 4.5653 1.8225 47 1 9.5463 5.0156 0.2911 48 1 9.0552 3.4142 3.4078 49 1 8.4918 2.6681 1.8931 50 1 6.7503 3.7856 4.1396 51 1 6.9295 2.0737 3.6761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700624801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:18 Heat of formation + Delta-G solvation = -87.037216 kcal Electronic energy + Delta-G solvation = -29545.830663 eV Core-core repulsion = 25446.405666 eV Total energy + Delta-G solvation = -4099.424997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07282 -39.69110 -38.22605 -36.89110 -34.50779 -34.32561 -33.54165 -31.87566 -31.58110 -29.75834 -28.84828 -27.06840 -25.95473 -25.32427 -23.84536 -23.64653 -22.29886 -20.74512 -20.69953 -20.22373 -18.56235 -17.83637 -17.07734 -16.93616 -16.88778 -16.27436 -16.05573 -15.69249 -15.39663 -15.12078 -14.94434 -14.66679 -14.27054 -14.06919 -13.86851 -13.58693 -13.37747 -13.16268 -13.11346 -12.86247 -12.69908 -12.58803 -12.56220 -12.07498 -11.84214 -11.65778 -11.46540 -11.43838 -11.25008 -11.03053 -10.79450 -10.61164 -10.48199 -10.46349 -10.42197 -10.03082 -9.97796 -9.81454 -9.63331 -9.29996 -8.95302 -8.84361 -6.86173 -5.70728 -2.99212 1.62943 2.25603 2.38239 3.41956 3.46398 3.51225 3.53377 4.04686 4.08080 4.27757 4.33867 4.46704 4.54214 4.59320 4.63449 4.64225 4.68918 4.70310 4.84354 4.88861 4.94659 4.98069 5.00007 5.13758 5.25518 5.28745 5.36252 5.36973 5.40863 5.52198 5.61354 5.62519 5.72196 5.76572 5.84713 5.91292 6.00524 6.03627 6.07795 6.09169 6.13903 6.21039 6.34879 6.56468 6.58289 6.77287 7.00451 7.30897 7.73303 7.83265 8.47655 9.59187 10.17761 10.53565 11.52022 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036132 B = 0.001738 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.758553 B =16109.848721 C =16362.535205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.521 6.521 8 N -0.609 5.609 9 C 0.102 3.898 10 C -0.122 4.122 11 C -0.092 4.092 12 C 0.053 3.947 13 O -0.355 6.355 14 C 0.073 3.927 15 H 0.067 0.933 16 C 0.160 3.840 17 N -0.727 5.727 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.137 4.137 27 C -0.118 4.118 28 C 0.110 3.890 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.025 0.975 43 H 0.030 0.970 44 H 0.388 0.612 45 H 0.254 0.746 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.945 -19.685 -7.947 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.279 6.279 5 C -0.035 4.035 6 C 0.304 3.696 7 O -0.395 6.395 8 N -0.345 5.345 9 C -0.021 4.021 10 C -0.160 4.160 11 C -0.093 4.093 12 C -0.025 4.025 13 O -0.273 6.273 14 C 0.016 3.984 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.372 5.372 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.176 4.176 27 C -0.156 4.156 28 C -0.012 4.012 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.222 0.778 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.614 -20.270 -7.315 29.822 hybrid contribution 0.505 0.917 -0.268 1.081 sum -20.109 -19.353 -7.584 28.921 Atomic orbital electron populations 1.23857 0.95490 1.02406 0.99797 1.22705 0.95621 0.98138 1.00423 1.21633 0.88693 0.96337 0.92322 1.88045 1.44352 1.34923 1.60541 1.22256 0.93213 0.89302 0.98738 1.20179 0.82350 0.83502 0.83582 1.90730 1.72177 1.26653 1.49983 1.48042 1.31311 1.14482 1.40641 1.21810 0.98328 0.85682 0.96242 1.21847 0.93447 1.03012 0.97690 1.21501 0.95796 0.96040 0.95914 1.23252 0.90098 0.90513 0.98604 1.89114 1.41142 1.65836 1.31225 1.23430 0.96338 0.93950 0.84713 0.91499 1.20713 0.90329 0.88454 0.97303 1.42255 1.06694 1.07872 1.80357 1.19235 0.85649 0.94686 1.37541 0.91253 1.24737 0.96990 0.96945 1.02303 1.69678 1.26406 1.10083 1.51828 0.86195 0.83658 0.79111 0.77255 1.21780 1.21776 1.20790 1.23200 0.95979 0.97233 1.01146 1.21886 0.97009 0.95910 1.00778 1.21740 0.85624 1.03600 0.90213 0.88363 0.87644 0.86386 0.92003 0.92468 0.90122 0.90129 0.89782 0.90401 0.89812 0.90979 0.92706 0.90209 0.95757 0.95259 0.77839 0.93590 0.90072 0.90307 0.89816 0.91149 0.90894 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 14.31 29.01 0.42 -0.53 16 2 C -0.15 -1.02 9.89 -36.03 -0.36 -1.37 16 3 C 0.09 0.57 6.35 36.01 0.23 0.80 16 4 O -0.36 -3.63 9.86 -55.14 -0.54 -4.18 16 5 C 0.04 0.34 4.76 36.01 0.17 0.51 16 6 C 0.52 5.55 7.77 -10.98 -0.09 5.47 16 7 O -0.52 -7.91 15.91 -14.35 -0.23 -8.14 16 8 N -0.61 -5.37 2.97 -172.89 -0.51 -5.89 16 9 C 0.10 0.66 6.02 -3.89 -0.02 0.64 16 10 C -0.12 -0.92 4.57 -27.10 -0.12 -1.04 16 11 C -0.09 -0.91 0.61 -154.09 -0.09 -1.00 16 12 C 0.05 0.64 6.16 37.47 0.23 0.88 16 13 O -0.35 -6.30 11.10 -35.23 -0.39 -6.69 16 14 C 0.07 1.19 3.42 -25.62 -0.09 1.10 16 15 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 16 C 0.16 3.27 6.02 -4.04 -0.02 3.24 16 17 N -0.73 -19.12 5.53 -59.91 -0.33 -19.45 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 C -0.14 -1.61 5.67 -24.93 -0.14 -1.75 16 27 C -0.12 -1.08 4.63 -26.85 -0.12 -1.20 16 28 C 0.11 1.02 6.13 -3.64 -0.02 1.00 16 29 H 0.10 0.41 7.90 -52.49 -0.41 0.00 16 30 H 0.11 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 7.86 -51.93 -0.41 -0.12 16 34 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 35 H 0.08 0.42 7.94 -51.93 -0.41 0.01 16 36 H 0.08 0.34 5.92 -51.93 -0.31 0.03 16 37 H 0.08 0.49 6.90 -51.93 -0.36 0.13 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.61 6.61 -51.93 -0.34 0.27 16 41 H 0.08 0.91 6.44 -51.92 -0.33 0.58 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.39 10.86 7.62 -40.82 -0.31 10.55 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 47 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.64 6.80 -51.93 -0.35 0.28 16 51 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -36.37 402.75 -9.11 -45.48 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.59 Total: 3.99 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.28 Total: -0.81 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.12 Total: -53.42 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.16 Total: -19.00 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.37 -9.11 -45.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700624801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.562 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds