Wall clock time and date at job start Tue Mar 31 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.42899 * 113.99629 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47140 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00301 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.58713 * 359.71321 * 8 6 5 10 10 C 1.52845 * 108.95312 * 234.16850 * 9 8 6 11 11 C 1.52429 * 109.48950 * 306.50261 * 10 9 8 12 12 C 1.53602 * 110.43916 * 296.88216 * 11 10 9 13 13 O 1.43896 * 107.11415 * 239.50315 * 12 11 10 14 14 C 1.44421 * 106.99916 * 26.36484 * 13 12 11 15 15 H 1.09000 * 110.60631 * 78.92343 * 14 13 12 16 16 C 1.52999 * 110.60710 * 201.74065 * 14 13 12 17 17 N 1.46504 * 109.46768 * 298.54641 * 16 14 13 18 18 C 1.36940 * 119.99502 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00495 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99501 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00290 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99809 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46964 * 90.00187 * 22 20 18 24 24 H 1.48504 * 109.47115 * 209.99936 * 22 20 18 25 25 H 1.48503 * 109.47201 * 329.99794 * 22 20 18 26 26 C 1.54319 * 110.04025 * 181.80660 * 11 10 9 27 27 C 1.52423 * 110.98291 * 59.74014 * 11 10 9 28 28 C 1.46928 * 120.58964 * 179.97438 * 8 6 5 29 29 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 33 33 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 34 34 H 1.09007 * 109.47484 * 299.99646 * 5 4 3 35 35 H 1.09004 * 109.47459 * 59.99983 * 5 4 3 36 36 H 1.09002 * 109.59653 * 353.98393 * 9 8 6 37 37 H 1.08995 * 109.59378 * 114.44380 * 9 8 6 38 38 H 1.09002 * 109.55130 * 186.43648 * 10 9 8 39 39 H 1.09006 * 109.34787 * 66.44069 * 10 9 8 40 40 H 1.08997 * 109.91176 * 358.87609 * 12 11 10 41 41 H 1.09008 * 109.90557 * 119.95229 * 12 11 10 42 42 H 1.09001 * 109.46860 * 58.54610 * 16 14 13 43 43 H 1.08997 * 109.46959 * 178.54992 * 16 14 13 44 44 H 0.96993 * 119.99791 * 359.97438 * 17 16 14 45 45 H 0.97004 * 120.00004 * 179.97438 * 21 20 18 46 46 H 1.09007 * 110.92687 * 216.20481 * 26 11 10 47 47 H 1.09000 * 110.93215 * 339.86846 * 26 11 10 48 48 H 1.09001 * 109.48168 * 180.17168 * 27 11 10 49 49 H 1.08993 * 109.49195 * 60.14522 * 27 11 10 50 50 H 1.08996 * 109.59277 * 245.57110 * 28 8 6 51 51 H 1.08996 * 109.59645 * 6.03030 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0897 1.2105 2.6675 8 7 5.8597 3.2600 2.3089 9 6 5.7596 4.5309 1.5784 10 6 7.1111 4.8420 0.9358 11 6 8.2024 4.7953 1.9989 12 6 7.9652 5.8811 3.0592 13 8 9.1234 6.7350 3.0574 14 6 9.7065 6.6529 1.7387 15 1 9.1532 7.2750 1.0352 16 6 11.1799 7.0634 1.7749 17 7 11.2885 8.4535 2.2247 18 6 12.5196 9.0430 2.3355 19 1 13.4103 8.4831 2.0916 20 6 12.6225 10.3601 2.7612 21 7 11.5369 11.0426 3.0579 22 14 14.3018 11.1641 2.9130 23 1 14.6579 11.8132 1.6257 24 1 14.2656 12.1865 3.9895 25 1 15.3167 10.1319 3.2445 26 6 9.5668 5.1522 1.3723 27 6 8.2706 3.4194 2.6512 28 6 6.9233 3.1002 3.3099 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 2.4755 1.4868 -0.9927 33 1 1.3855 2.1161 0.2660 34 1 4.3587 2.6397 0.0608 35 1 3.2688 3.2697 1.3192 36 1 4.9982 4.4478 0.8029 37 1 5.4942 5.3302 2.2702 38 1 7.0821 5.8354 0.4881 39 1 7.3232 4.1015 0.1645 40 1 7.0770 6.4598 2.8056 41 1 7.8410 5.4215 4.0398 42 1 11.7209 6.4151 2.4642 43 1 11.6076 6.9701 0.7767 44 1 10.4885 8.9563 2.4434 45 1 11.6089 11.9630 3.3558 46 1 10.3674 4.5653 1.8225 47 1 9.5463 5.0156 0.2911 48 1 9.0552 3.4142 3.4078 49 1 8.4918 2.6681 1.8931 50 1 6.7503 3.7856 4.1396 51 1 6.9295 2.0737 3.6761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700624801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:17 Heat of formation + Delta-G solvation = -111.818188 kcal Electronic energy + Delta-G solvation = -29546.905247 eV Core-core repulsion = 25446.405666 eV Total energy + Delta-G solvation = -4100.499581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89767 -40.58697 -38.86718 -37.85408 -36.35198 -34.80325 -34.47098 -33.49656 -32.50211 -31.11802 -29.63823 -28.03695 -26.77013 -26.47871 -25.06096 -24.36847 -23.75469 -22.06671 -21.32143 -20.81489 -19.40597 -19.13607 -18.49772 -17.59183 -17.48112 -17.21999 -16.95851 -16.55082 -16.50878 -16.23694 -16.08545 -15.58213 -15.31870 -15.17445 -14.82749 -14.71487 -14.48756 -14.27731 -14.02639 -13.88421 -13.69186 -13.37266 -13.14294 -13.11306 -13.07129 -12.89015 -12.75171 -12.46209 -12.27870 -12.20972 -12.08575 -11.91516 -11.88456 -11.47711 -11.40356 -11.27492 -10.99162 -10.95865 -10.78427 -10.49319 -10.25780 -9.70233 -8.98778 -7.93282 -5.22500 1.18854 1.47362 1.49941 1.50672 1.58354 1.75768 2.56523 2.90787 2.98796 3.39883 3.41070 3.47801 3.61923 3.74771 3.93604 4.03752 4.05673 4.07487 4.14500 4.18955 4.20935 4.25627 4.26791 4.37763 4.39131 4.45845 4.53815 4.58372 4.60235 4.61973 4.70961 4.76093 4.80790 4.91574 4.96812 4.98113 4.98853 5.03572 5.10024 5.20700 5.28846 5.30039 5.48114 5.49359 5.66286 5.70386 6.07102 6.13798 6.28544 6.34815 7.09377 7.34414 8.10931 8.34692 9.30377 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036132 B = 0.001738 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.758553 B =16109.848721 C =16362.535205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.578 6.578 8 N -0.603 5.603 9 C 0.099 3.901 10 C -0.119 4.119 11 C -0.081 4.081 12 C 0.047 3.953 13 O -0.398 6.398 14 C 0.077 3.923 15 H 0.069 0.931 16 C 0.154 3.846 17 N -0.742 5.742 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.270 1.270 26 C -0.127 4.127 27 C -0.110 4.110 28 C 0.110 3.890 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.016 0.984 43 H 0.042 0.958 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 -19.782 -9.726 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.318 6.318 5 C -0.034 4.034 6 C 0.299 3.701 7 O -0.457 6.457 8 N -0.337 5.337 9 C -0.022 4.022 10 C -0.157 4.157 11 C -0.082 4.082 12 C -0.030 4.030 13 O -0.317 6.317 14 C 0.020 3.980 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.385 5.385 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.165 4.165 27 C -0.148 4.148 28 C -0.012 4.012 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.034 0.966 43 H 0.060 0.940 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.524 -20.383 -9.131 31.018 hybrid contribution 0.758 0.896 0.308 1.213 sum -20.766 -19.486 -8.823 29.813 Atomic orbital electron populations 1.24061 0.95071 1.03488 0.97837 1.22795 0.96310 0.98155 1.02320 1.21795 0.88294 0.96561 0.92482 1.88002 1.45512 1.36458 1.61784 1.22415 0.92633 0.89374 0.98947 1.20883 0.82877 0.82802 0.83557 1.90703 1.73768 1.28943 1.52269 1.48118 1.30457 1.15007 1.40152 1.22043 0.98737 0.84431 0.97032 1.21855 0.92840 1.03942 0.97037 1.21423 0.95727 0.95190 0.95812 1.23485 0.88836 0.90827 0.99817 1.89063 1.43202 1.67431 1.32052 1.23317 0.93338 0.96804 0.84559 0.91355 1.20927 0.93791 0.85409 0.97101 1.42477 1.05446 1.09985 1.80575 1.19680 0.86852 0.95086 1.36494 0.90610 1.25608 1.00770 0.97711 1.02759 1.69845 1.28636 1.10152 1.53334 0.85106 0.79376 0.77979 0.77074 1.21032 1.22187 1.19516 1.23145 0.96952 0.93684 1.02707 1.21794 0.96706 0.95634 1.00637 1.21655 0.86094 1.02704 0.90758 0.86957 0.86892 0.87695 0.90431 0.90773 0.87142 0.87268 0.86438 0.89839 0.88997 0.89771 0.91307 0.89949 0.96569 0.93996 0.79347 0.94033 0.90544 0.87917 0.90458 0.90813 0.90474 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.31 67.78 0.97 -0.55 16 2 C -0.18 -2.25 9.89 25.64 0.25 -2.00 16 3 C 0.08 0.95 6.35 71.24 0.45 1.40 16 4 O -0.40 -7.51 9.86 -129.94 -1.28 -8.79 16 5 C 0.05 0.56 4.76 71.24 0.34 0.90 16 6 C 0.51 10.28 7.77 87.66 0.68 10.96 16 7 O -0.58 -17.86 15.91 16.00 0.25 -17.61 16 8 N -0.60 -9.44 2.97 -819.29 -2.43 -11.87 16 9 C 0.10 0.92 6.02 86.25 0.52 1.44 16 10 C -0.12 -1.36 4.57 30.35 0.14 -1.22 16 11 C -0.08 -1.42 0.61 -51.91 -0.03 -1.46 16 12 C 0.05 1.09 6.16 72.18 0.44 1.53 16 13 O -0.40 -14.11 11.10 -148.98 -1.65 -15.76 16 14 C 0.08 2.44 3.42 31.32 0.11 2.55 16 15 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 16 C 0.15 6.29 6.02 86.38 0.52 6.81 16 17 N -0.74 -39.53 5.53 -343.45 -1.90 -41.43 16 18 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 22 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 C -0.13 -2.73 5.67 31.76 0.18 -2.55 16 27 C -0.11 -1.87 4.63 30.51 0.14 -1.73 16 28 C 0.11 1.97 6.13 86.41 0.53 2.50 16 29 H 0.11 0.68 7.90 -2.91 -0.02 0.65 16 30 H 0.11 0.80 8.06 -2.91 -0.02 0.77 16 31 H 0.10 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.54 7.86 -2.39 -0.02 0.53 16 34 H 0.11 0.68 7.69 -2.38 -0.02 0.66 16 35 H 0.11 0.70 7.94 -2.38 -0.02 0.68 16 36 H 0.12 0.36 5.92 -2.39 -0.01 0.35 16 37 H 0.08 0.75 6.90 -2.39 -0.02 0.73 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 1.39 6.61 -2.39 -0.02 1.38 16 41 H 0.08 1.83 6.44 -2.38 -0.02 1.82 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.37 21.52 7.62 -92.71 -0.71 20.82 16 45 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 46 H 0.08 1.73 7.75 -2.38 -0.02 1.71 16 47 H 0.10 1.74 7.83 -2.39 -0.02 1.72 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.30 6.80 -2.39 -0.02 1.28 16 51 H 0.08 1.69 7.00 -2.39 -0.02 1.67 16 Total: -1.00 -81.68 402.75 2.06 -79.62 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.21 Total: 26.55 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.55 Total: 1.00 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.05 Total: -113.92 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.68 Total: -42.16 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -81.68 2.06 -79.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700624801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.200 kcal (2) G-P(sol) polarization free energy of solvation -81.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds