Wall clock time and date at job start Tue Mar 31 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99605 * 2 1 4 4 O 1.42900 * 109.46871 * 135.00098 * 3 2 1 5 5 C 1.42895 * 114.00026 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47562 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47636 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47124 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00278 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99862 * 179.97438 * 8 7 6 11 11 C 1.47084 * 125.63251 * 0.04497 * 10 8 7 12 12 C 1.54455 * 107.30102 * 180.96153 * 11 10 8 13 13 C 1.54355 * 102.88201 * 21.48641 * 12 11 10 14 14 C 1.47573 * 125.63270 * 180.02562 * 10 8 7 15 15 C 1.52352 * 110.42061 * 207.65144 * 13 12 11 16 16 N 1.47317 * 108.47519 * 286.29406 * 15 13 12 17 17 C 1.36941 * 121.08038 * 130.83720 * 16 15 13 18 18 H 1.07996 * 119.99852 * 205.68172 * 17 16 15 19 19 C 1.38813 * 119.99464 * 25.68428 * 17 16 15 20 20 N 1.31618 * 120.00207 * 16.70647 * 19 17 16 21 21 Si 1.86800 * 119.99505 * 196.70009 * 19 17 16 22 22 H 1.48498 * 109.46939 * 90.00420 * 21 19 17 23 23 H 1.48499 * 109.46963 * 210.00045 * 21 19 17 24 24 H 1.48495 * 109.47547 * 329.99945 * 21 19 17 25 25 C 1.47179 * 117.84331 * 310.87032 * 16 15 13 26 26 C 1.53277 * 108.52206 * 51.30335 * 25 16 15 27 27 O 1.41876 * 110.75950 * 83.66763 * 13 12 11 28 28 H 1.07994 * 120.00158 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99756 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00349 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46961 * 14.99868 * 3 2 1 32 32 H 1.09001 * 109.47017 * 254.99528 * 3 2 1 33 33 H 1.09004 * 109.47260 * 59.99419 * 5 4 3 34 34 H 1.09004 * 109.47373 * 300.00131 * 5 4 3 35 35 H 1.09004 * 109.47092 * 59.99580 * 6 5 4 36 36 H 1.08998 * 109.47461 * 299.99972 * 6 5 4 37 37 H 1.09003 * 109.46751 * 60.00170 * 7 6 5 38 38 H 1.08998 * 109.46811 * 300.00540 * 7 6 5 39 39 H 1.09008 * 109.88010 * 300.39098 * 11 10 8 40 40 H 1.09004 * 109.88137 * 61.53151 * 11 10 8 41 41 H 1.09002 * 110.72991 * 263.14377 * 12 11 10 42 42 H 1.08996 * 110.73600 * 139.83822 * 12 11 10 43 43 H 1.08994 * 110.37376 * 37.89779 * 14 10 8 44 44 H 1.08997 * 110.46658 * 275.59627 * 14 10 8 45 45 H 1.09003 * 109.63805 * 166.59719 * 15 13 12 46 46 H 1.09004 * 109.64042 * 45.99241 * 15 13 12 47 47 H 0.97006 * 119.99776 * 180.02562 * 20 19 17 48 48 H 1.09007 * 109.62237 * 291.59534 * 25 16 15 49 49 H 1.08997 * 109.78769 * 171.11277 * 25 16 15 50 50 H 1.09005 * 109.51346 * 66.84026 * 26 25 16 51 51 H 1.08994 * 109.51188 * 186.99620 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9076 2.4353 1.0329 6 6 5.0097 2.2547 2.0785 7 6 5.8463 3.5329 2.1640 8 6 6.9323 3.3546 3.1935 9 8 7.0280 2.3081 3.7990 10 7 7.7977 4.3578 3.4408 11 6 7.7958 5.6729 2.7822 12 6 8.9766 6.4802 3.3650 13 6 9.9049 5.3794 3.9211 14 6 8.9035 4.3182 4.4172 15 6 10.7315 5.9176 5.0821 16 7 11.7724 6.8085 4.5407 17 6 11.9769 8.0570 5.0647 18 1 12.4089 8.8352 4.4531 19 6 11.6290 8.3222 6.3821 20 7 11.4175 7.3291 7.2196 21 14 11.4611 10.0885 6.9662 22 1 10.0625 10.5453 6.7657 23 1 11.8058 10.1677 8.4085 24 1 12.3817 10.9566 6.1890 25 6 12.5848 6.3135 3.4177 26 6 11.6420 5.7981 2.3246 27 8 10.7313 4.8528 2.8951 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3854 2.1161 0.2660 32 1 2.4755 1.4868 -0.9926 33 1 3.2675 3.2695 1.3205 34 1 4.3578 2.6410 0.0617 35 1 5.6498 1.4204 1.7913 36 1 4.5592 2.0493 3.0496 37 1 5.2064 4.3674 2.4511 38 1 6.2968 3.7378 1.1929 39 1 7.9262 5.5493 1.7070 40 1 6.8575 6.1886 2.9867 41 1 8.6367 7.1384 4.1646 42 1 9.4786 7.0492 2.5825 43 1 9.3679 3.3322 4.4248 44 1 8.5419 4.5743 5.4131 45 1 11.1990 5.0889 5.6140 46 1 10.0882 6.4765 5.7618 47 1 11.1740 7.5145 8.1401 48 1 13.2268 5.5018 3.7602 49 1 13.1979 7.1226 3.0209 50 1 11.0829 6.6332 1.9025 51 1 12.2240 5.3150 1.5399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734139543.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:34 Heat of formation + Delta-G solvation = -97.283487 kcal Electronic energy + Delta-G solvation = -29781.267800 eV Core-core repulsion = 25681.398491 eV Total energy + Delta-G solvation = -4099.869309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59787 -40.20291 -39.10058 -37.53098 -36.25430 -35.36202 -34.05322 -33.25247 -32.84261 -30.85891 -29.36398 -28.59494 -27.18985 -26.14157 -25.18585 -24.04715 -23.13976 -22.52364 -20.79744 -20.60683 -20.00150 -18.90776 -18.34730 -17.69691 -17.54908 -17.36480 -16.81212 -16.69259 -16.34976 -16.13074 -15.80447 -15.75577 -15.46281 -15.13961 -14.98245 -14.63140 -14.48828 -14.15411 -13.89184 -13.69360 -13.63956 -13.41218 -13.11211 -13.07172 -12.87333 -12.80558 -12.63189 -12.49037 -12.21111 -12.14365 -12.11784 -11.92014 -11.86869 -11.81955 -11.79656 -11.15269 -10.98886 -10.78576 -10.74313 -10.46562 -10.22488 -9.67523 -8.73278 -7.88832 -5.35264 1.24279 1.48426 1.49657 1.58498 1.61982 1.90916 2.48961 2.73497 2.85047 3.24358 3.38119 3.58205 3.63062 3.92758 3.97511 3.97681 4.03979 4.19659 4.23241 4.27697 4.31470 4.34877 4.38889 4.44860 4.52089 4.52726 4.55193 4.60148 4.63087 4.65180 4.68787 4.74648 4.79747 4.93296 4.98967 5.05177 5.05573 5.12227 5.14682 5.22359 5.26562 5.30445 5.51097 5.62805 5.66559 5.73131 6.29659 6.30175 6.41846 6.53965 7.06984 7.12998 7.75881 8.30859 9.17501 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.001960 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.036193 B =14279.962750 C =14716.467206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.176 4.176 3 C 0.084 3.916 4 O -0.415 6.415 5 C 0.066 3.934 6 C -0.100 4.100 7 C -0.118 4.118 8 C 0.520 3.480 9 O -0.594 6.594 10 N -0.613 5.613 11 C 0.109 3.891 12 C -0.138 4.138 13 C 0.093 3.907 14 C 0.126 3.874 15 C 0.175 3.825 16 N -0.608 5.608 17 C -0.257 4.257 18 H 0.076 0.924 19 C -0.049 4.049 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.281 1.281 23 H -0.301 1.301 24 H -0.267 1.267 25 C 0.102 3.898 26 C 0.053 3.947 27 O -0.384 6.384 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.075 0.925 45 H -0.012 1.012 46 H 0.072 0.928 47 H 0.250 0.750 48 H 0.010 0.990 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.010 -4.384 -18.351 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.009 3.991 4 O -0.335 6.335 5 C -0.010 4.010 6 C -0.138 4.138 7 C -0.157 4.157 8 C 0.311 3.689 9 O -0.475 6.475 10 N -0.346 5.346 11 C -0.012 4.012 12 C -0.176 4.176 13 C 0.051 3.949 14 C 0.002 3.998 15 C 0.048 3.952 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.094 0.906 19 C -0.245 4.245 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.208 1.208 23 H -0.228 1.228 24 H -0.192 1.192 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.006 0.994 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.028 0.972 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.005 -5.293 -17.861 25.908 hybrid contribution 0.659 0.886 1.229 1.652 sum -17.346 -4.408 -16.632 24.432 Atomic orbital electron populations 1.24055 0.95142 1.03394 0.98132 1.22843 0.96321 0.98186 1.02094 1.21686 0.88630 0.96279 0.92535 1.87885 1.45593 1.38517 1.61499 1.22544 0.92409 0.87057 0.99029 1.21142 0.96197 0.97141 0.99358 1.21522 0.95034 1.00379 0.98774 1.21125 0.82466 0.81459 0.83876 1.90691 1.74489 1.28778 1.53519 1.48673 1.30159 1.15705 1.40079 1.22261 0.99507 0.81438 0.98023 1.22930 0.95559 0.97259 1.01875 1.22370 0.90065 0.92968 0.89523 1.21838 0.86515 0.98934 0.92514 1.20856 0.90386 0.91733 0.92217 1.44323 1.36598 1.14820 1.37449 1.19537 1.38245 0.87343 0.93587 0.90611 1.25780 1.02210 1.00825 0.95639 1.70192 1.52595 1.31585 1.04081 0.85254 0.78217 0.80309 0.76595 1.20755 1.22824 1.19197 1.21803 0.93611 0.97508 0.89467 1.23170 0.91138 0.93018 0.95050 1.87650 1.51931 1.38073 1.52637 0.87240 0.86764 0.87366 0.91536 0.91211 0.91200 0.91183 0.92589 0.92516 0.85676 0.85883 0.88860 0.88309 0.90730 0.88785 0.92065 0.90649 0.99407 0.90978 0.94085 0.97188 0.90597 0.91777 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 14.31 67.78 0.97 -0.81 16 2 C -0.18 -2.47 9.89 25.65 0.25 -2.22 16 3 C 0.08 1.17 6.35 71.24 0.45 1.62 16 4 O -0.41 -8.30 10.33 -148.98 -1.54 -9.84 16 5 C 0.07 0.98 5.94 71.98 0.43 1.41 16 6 C -0.10 -2.04 4.87 30.59 0.15 -1.89 16 7 C -0.12 -2.03 4.89 29.85 0.15 -1.88 16 8 C 0.52 15.11 7.85 87.66 0.69 15.80 16 9 O -0.59 -23.07 16.25 -3.02 -0.05 -23.12 16 10 N -0.61 -17.86 3.33 -812.58 -2.71 -20.57 16 11 C 0.11 2.40 6.50 86.76 0.56 2.96 16 12 C -0.14 -4.11 5.88 31.55 0.19 -3.93 16 13 C 0.09 3.44 0.84 -10.17 -0.01 3.43 16 14 C 0.13 4.56 6.08 86.55 0.53 5.09 16 15 C 0.17 8.27 4.07 86.01 0.35 8.62 16 16 N -0.61 -29.17 2.99 -698.88 -2.09 -31.25 16 17 C -0.26 -13.34 9.67 84.03 0.81 -12.52 16 18 H 0.08 3.76 7.88 -2.91 -0.02 3.73 16 19 C -0.05 -2.63 4.96 84.86 0.42 -2.21 16 20 N -0.94 -54.19 11.12 21.65 0.24 -53.95 16 21 Si 0.97 42.86 29.59 68.60 2.03 44.89 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 C 0.10 4.02 6.71 86.34 0.58 4.59 16 26 C 0.05 1.69 6.79 72.07 0.49 2.17 16 27 O -0.38 -14.07 10.28 -148.95 -1.53 -15.60 16 28 H 0.11 0.86 7.90 -2.91 -0.02 0.84 16 29 H 0.11 0.92 8.06 -2.91 -0.02 0.89 16 30 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.07 0.72 7.86 -2.39 -0.02 0.70 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 36 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 2.42 7.82 -2.39 -0.02 2.41 16 42 H 0.09 2.66 6.10 -2.39 -0.01 2.65 16 43 H 0.06 2.46 8.05 -2.39 -0.02 2.44 16 44 H 0.08 2.82 7.99 -2.39 -0.02 2.80 16 45 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.07 3.76 5.93 -2.39 -0.01 3.75 16 47 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 48 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 49 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 50 H 0.06 1.84 6.25 -2.38 -0.01 1.83 16 51 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -73.04 406.58 2.25 -70.79 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.89 Total: 18.41 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 7.00 Total: 20.24 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.56 Total: -105.77 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -3.12 Total: -48.56 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.04 2.25 -70.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734139543.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.493 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds