Wall clock time and date at job start Tue Mar 31 2020 21:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46851 * 2 1 4 4 N 1.46494 * 109.46989 * 239.99888 * 2 1 3 5 5 C 1.34776 * 119.99867 * 85.00106 * 4 2 1 6 6 O 1.21273 * 120.00396 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99660 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47004 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47044 * 295.00025 * 8 7 5 10 10 C 1.52991 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47439 * 59.99652 * 10 9 8 12 12 C 1.53002 * 109.47193 * 300.00372 * 11 10 9 13 13 C 1.52995 * 109.47253 * 174.99914 * 8 7 5 14 14 C 1.50697 * 109.47009 * 119.99821 * 2 1 3 15 15 O 1.21274 * 120.00332 * 93.81321 * 14 2 1 16 16 N 1.34780 * 119.99925 * 273.81389 * 14 2 1 17 17 C 1.47068 * 136.05679 * 355.01848 * 16 14 2 18 18 C 1.53498 * 88.04842 * 207.05920 * 17 16 14 19 19 O 1.42902 * 114.20925 * 87.54984 * 18 17 16 20 20 C 1.50704 * 114.20923 * 220.37848 * 18 17 16 21 21 H 1.08001 * 119.99811 * 359.97438 * 20 18 17 22 22 C 1.37877 * 120.00288 * 180.02562 * 20 18 17 23 23 N 1.31518 * 119.99736 * 359.97438 * 22 20 18 24 24 Si 1.86793 * 119.99904 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47244 * 89.99977 * 24 22 20 26 26 H 1.48509 * 109.47088 * 209.99741 * 24 22 20 27 27 H 1.48498 * 109.47411 * 329.99831 * 24 22 20 28 28 C 1.47068 * 136.05645 * 174.97440 * 16 14 2 29 29 H 1.09011 * 109.47214 * 295.58635 * 1 2 3 30 30 H 1.09005 * 109.47535 * 55.58151 * 1 2 3 31 31 H 1.09000 * 109.47385 * 175.58804 * 1 2 3 32 32 H 0.97003 * 120.00328 * 265.00099 * 4 2 1 33 33 H 1.09005 * 109.46757 * 299.99578 * 7 5 4 34 34 H 1.08990 * 109.47123 * 59.99706 * 7 5 4 35 35 H 1.09003 * 109.47006 * 54.99719 * 8 7 5 36 36 H 1.08999 * 109.46705 * 300.00416 * 9 8 7 37 37 H 1.09002 * 109.47043 * 59.99418 * 9 8 7 38 38 H 1.09004 * 109.47154 * 300.00078 * 10 9 8 39 39 H 1.09002 * 109.47746 * 179.97438 * 10 9 8 40 40 H 1.08995 * 109.47689 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.46666 * 59.99626 * 11 10 9 42 42 H 1.09003 * 109.46969 * 299.99930 * 12 11 10 43 43 H 1.08993 * 109.47557 * 179.97438 * 12 11 10 44 44 H 1.09005 * 109.47160 * 300.00096 * 13 8 7 45 45 H 1.08997 * 109.47340 * 59.99509 * 13 8 7 46 46 H 1.08998 * 113.47171 * 321.86732 * 17 16 14 47 47 H 1.08997 * 113.46462 * 92.25490 * 17 16 14 48 48 H 0.96701 * 114.00033 * 180.02562 * 19 18 17 49 49 H 0.96999 * 119.99602 * 180.02562 * 23 22 20 50 50 H 1.09000 * 113.46563 * 267.68916 * 28 16 14 51 51 H 1.09000 * 113.47105 * 38.06833 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8581 1.1583 -2.4117 7 6 2.6488 -0.7289 -3.5877 8 6 2.7010 0.2544 -4.7588 9 6 1.2823 0.7108 -5.1051 10 6 1.3344 1.6935 -6.2765 11 6 1.9599 1.0059 -7.4918 12 6 3.3785 0.5494 -7.1455 13 6 3.3266 -0.4327 -5.9742 14 6 2.0323 -0.7104 1.2305 15 8 2.3003 -1.8921 1.1815 16 7 2.1837 -0.0323 2.3854 17 6 2.0607 1.3689 2.8146 18 6 3.0782 1.0640 3.9227 19 8 4.4417 1.2256 3.5268 20 6 2.7594 1.7062 5.2483 21 1 1.8766 2.3195 5.3527 22 6 3.5953 1.5116 6.3274 23 7 4.6705 0.7650 6.2000 24 14 3.2004 2.3081 7.9702 25 1 2.3556 1.3899 8.7752 26 1 4.4627 2.5877 8.7009 27 1 2.4693 3.5801 7.7406 28 6 2.5439 -0.3683 3.7712 29 1 -0.3634 0.4439 0.9270 30 1 -0.3634 0.5809 -0.8478 31 1 -0.3634 -1.0246 -0.0791 32 1 2.2489 -1.6318 -1.1526 33 1 3.6479 -1.1214 -3.3985 34 1 1.9759 -1.5506 -3.8325 35 1 3.3031 1.1193 -4.4804 36 1 0.6802 -0.1541 -5.3834 37 1 0.8365 1.2003 -4.2392 38 1 1.9367 2.5585 -5.9986 39 1 0.3237 2.0184 -6.5236 40 1 1.9974 1.7061 -8.3262 41 1 1.3576 0.1409 -7.7696 42 1 3.9808 1.4144 -6.8675 43 1 3.8240 0.0592 -8.0110 44 1 4.3373 -0.7579 -5.7274 45 1 2.7245 -1.2977 -6.2525 46 1 2.4245 2.0829 2.0757 47 1 1.0701 1.6217 3.1927 48 1 5.0801 1.0324 4.2269 49 1 5.2584 0.6278 6.9593 50 1 1.6823 -0.5784 4.4048 51 1 3.3178 -1.1322 3.8455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186833270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:47 Heat of formation + Delta-G solvation = -115.113232 kcal Electronic energy + Delta-G solvation = -29931.612026 eV Core-core repulsion = 25830.969562 eV Total energy + Delta-G solvation = -4100.642464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40080 -39.60375 -38.38774 -37.51032 -34.77880 -34.09743 -32.94606 -32.22658 -30.96533 -30.88680 -28.62454 -27.24871 -25.70960 -25.20046 -23.71995 -22.78905 -21.79626 -20.29814 -20.13207 -19.87932 -18.54747 -17.63552 -17.07168 -16.47874 -15.99471 -15.60588 -15.38144 -15.23463 -14.88265 -14.77414 -14.35385 -14.22661 -14.20894 -14.06769 -13.42576 -13.35020 -12.96484 -12.79603 -12.65139 -12.49246 -12.33717 -12.13931 -12.01186 -11.99967 -11.78250 -11.60164 -11.54661 -11.29159 -11.12994 -11.10673 -10.93592 -10.62810 -10.51804 -10.47413 -10.31855 -10.22137 -9.83653 -9.64914 -9.27652 -9.02119 -8.81018 -8.46285 -7.95367 -6.43274 -4.54262 2.61856 2.87831 3.07518 3.12634 3.20991 3.23672 3.61196 4.15068 4.43591 4.50725 4.52694 4.69397 4.79474 4.82277 4.91152 5.03132 5.14930 5.19974 5.22260 5.29195 5.31338 5.36871 5.42312 5.46529 5.49245 5.55434 5.63489 5.71419 5.78652 5.84560 5.89382 5.93773 5.99718 6.02019 6.08008 6.10157 6.13132 6.22796 6.28966 6.34679 6.36217 6.44533 6.62012 6.74162 7.05132 7.52883 7.59601 7.74969 8.22565 8.35331 8.49068 8.57675 9.17126 9.44358 10.63598 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.002047 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.216950 B =13676.794283 C =13797.037030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.130 3.870 3 H 0.106 0.894 4 N -0.714 5.714 5 C 0.515 3.485 6 O -0.538 6.538 7 C -0.137 4.137 8 C -0.070 4.070 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.119 4.119 13 C -0.115 4.115 14 C 0.532 3.468 15 O -0.561 6.561 16 N -0.628 5.628 17 C 0.098 3.902 18 C 0.241 3.759 19 O -0.572 6.572 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.910 3.090 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.079 3.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.395 0.605 49 H 0.275 0.725 50 H 0.081 0.919 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 -1.928 -20.264 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 H 0.124 0.876 4 N -0.368 5.368 5 C 0.302 3.698 6 O -0.415 6.415 7 C -0.177 4.177 8 C -0.089 4.089 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.321 3.679 15 O -0.441 6.441 16 N -0.360 5.360 17 C -0.025 4.025 18 C 0.199 3.801 19 O -0.385 6.385 20 C -0.573 4.573 21 H 0.092 0.908 22 C -0.132 4.132 23 N -0.536 5.536 24 Si 0.737 3.263 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.044 4.044 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.245 0.755 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.252 0.748 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.790 -1.724 -20.963 21.816 hybrid contribution 0.187 -0.416 1.532 1.598 sum -5.603 -2.140 -19.431 20.336 Atomic orbital electron populations 1.22014 0.92863 1.02859 1.03252 1.20685 0.95537 0.98050 0.83546 0.87607 1.45892 1.67359 1.14812 1.08745 1.20716 0.77316 0.87393 0.84372 1.90662 1.50017 1.15950 1.84863 1.21760 1.03205 0.99781 0.92963 1.20914 0.97792 0.97638 0.92584 1.21710 0.96075 0.98933 0.99005 1.21501 1.00442 0.98567 0.95001 1.21556 0.96304 1.00134 0.97763 1.21503 0.97033 0.99265 0.97816 1.21594 1.00638 0.98247 0.94802 1.19905 0.78006 0.86495 0.83534 1.90626 1.53015 1.15838 1.84617 1.49718 1.65632 1.12133 1.08567 1.23487 1.00344 0.81968 0.96714 1.19539 0.80987 0.89076 0.90457 1.86020 1.16311 1.91591 1.44602 1.21400 1.10284 1.32039 0.93574 0.90821 1.25104 0.94398 0.93848 0.99802 1.69268 1.13772 1.37951 1.32659 0.86289 0.78051 0.79748 0.82190 1.20281 1.20868 1.19467 1.24255 0.99188 1.03286 0.77641 0.91033 0.91042 0.91884 0.75496 0.88759 0.88886 0.90271 0.92820 0.89862 0.91962 0.92338 0.92395 0.92235 0.91951 0.92209 0.91951 0.91983 0.91282 0.89216 0.74790 0.91490 0.90073 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.47 37.16 0.35 -1.65 16 2 C 0.13 2.05 2.83 -69.09 -0.20 1.85 16 3 H 0.11 1.78 7.38 -51.93 -0.38 1.40 16 4 N -0.71 -9.89 5.05 -54.94 -0.28 -10.17 16 5 C 0.52 6.77 7.51 -10.98 -0.08 6.69 16 6 O -0.54 -8.59 13.63 5.56 0.08 -8.51 16 7 C -0.14 -1.29 5.18 -27.88 -0.14 -1.44 16 8 C -0.07 -0.67 1.84 -90.62 -0.17 -0.83 16 9 C -0.12 -1.18 4.94 -26.73 -0.13 -1.31 16 10 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 11 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 12 C -0.12 -0.88 5.92 -26.76 -0.16 -1.03 16 13 C -0.12 -0.88 5.20 -26.76 -0.14 -1.02 16 14 C 0.53 10.33 7.28 -10.99 -0.08 10.25 16 15 O -0.56 -12.17 16.80 5.56 0.09 -12.08 16 16 N -0.63 -12.87 3.69 -184.99 -0.68 -13.56 16 17 C 0.10 1.92 7.71 -8.50 -0.07 1.86 16 18 C 0.24 5.68 1.59 -91.19 -0.14 5.53 16 19 O -0.57 -14.67 13.54 -35.23 -0.48 -15.15 16 20 C -0.53 -13.06 8.69 -34.44 -0.30 -13.36 16 21 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 22 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 23 N -0.90 -22.80 11.01 55.43 0.61 -22.19 16 24 Si 0.91 19.18 29.54 -169.99 -5.02 14.16 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 C 0.08 1.77 8.04 -8.43 -0.07 1.70 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 5.33 7.80 -40.82 -0.32 5.01 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 1.02 5.95 -51.93 -0.31 0.71 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 47 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 48 H 0.40 10.37 6.33 45.56 0.29 10.66 16 49 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 50 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 51 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -28.68 405.98 -9.58 -38.27 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -8.28 Total: 16.46 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.74 Total: 6.65 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.35 Total: -45.91 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.31 Total: -35.74 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.68 -9.58 -38.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.848 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds