Wall clock time and date at job start Tue Mar 31 2020 21:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46851 * 2 1 4 4 N 1.46494 * 109.46989 * 239.99888 * 2 1 3 5 5 C 1.34776 * 119.99867 * 85.00106 * 4 2 1 6 6 O 1.21273 * 120.00396 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99660 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47004 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47044 * 295.00025 * 8 7 5 10 10 C 1.52991 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47439 * 59.99652 * 10 9 8 12 12 C 1.53002 * 109.47193 * 300.00372 * 11 10 9 13 13 C 1.52995 * 109.47253 * 174.99914 * 8 7 5 14 14 C 1.50697 * 109.47009 * 119.99821 * 2 1 3 15 15 O 1.21274 * 120.00332 * 93.81321 * 14 2 1 16 16 N 1.34780 * 119.99925 * 273.81389 * 14 2 1 17 17 C 1.47068 * 136.05679 * 355.01848 * 16 14 2 18 18 C 1.53498 * 88.04842 * 207.05920 * 17 16 14 19 19 O 1.42902 * 114.20925 * 87.54984 * 18 17 16 20 20 C 1.50704 * 114.20923 * 220.37848 * 18 17 16 21 21 H 1.08001 * 119.99811 * 359.97438 * 20 18 17 22 22 C 1.37877 * 120.00288 * 180.02562 * 20 18 17 23 23 N 1.31518 * 119.99736 * 359.97438 * 22 20 18 24 24 Si 1.86793 * 119.99904 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47244 * 89.99977 * 24 22 20 26 26 H 1.48509 * 109.47088 * 209.99741 * 24 22 20 27 27 H 1.48498 * 109.47411 * 329.99831 * 24 22 20 28 28 C 1.47068 * 136.05645 * 174.97440 * 16 14 2 29 29 H 1.09011 * 109.47214 * 295.58635 * 1 2 3 30 30 H 1.09005 * 109.47535 * 55.58151 * 1 2 3 31 31 H 1.09000 * 109.47385 * 175.58804 * 1 2 3 32 32 H 0.97003 * 120.00328 * 265.00099 * 4 2 1 33 33 H 1.09005 * 109.46757 * 299.99578 * 7 5 4 34 34 H 1.08990 * 109.47123 * 59.99706 * 7 5 4 35 35 H 1.09003 * 109.47006 * 54.99719 * 8 7 5 36 36 H 1.08999 * 109.46705 * 300.00416 * 9 8 7 37 37 H 1.09002 * 109.47043 * 59.99418 * 9 8 7 38 38 H 1.09004 * 109.47154 * 300.00078 * 10 9 8 39 39 H 1.09002 * 109.47746 * 179.97438 * 10 9 8 40 40 H 1.08995 * 109.47689 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.46666 * 59.99626 * 11 10 9 42 42 H 1.09003 * 109.46969 * 299.99930 * 12 11 10 43 43 H 1.08993 * 109.47557 * 179.97438 * 12 11 10 44 44 H 1.09005 * 109.47160 * 300.00096 * 13 8 7 45 45 H 1.08997 * 109.47340 * 59.99509 * 13 8 7 46 46 H 1.08998 * 113.47171 * 321.86732 * 17 16 14 47 47 H 1.08997 * 113.46462 * 92.25490 * 17 16 14 48 48 H 0.96701 * 114.00033 * 180.02562 * 19 18 17 49 49 H 0.96999 * 119.99602 * 180.02562 * 23 22 20 50 50 H 1.09000 * 113.46563 * 267.68916 * 28 16 14 51 51 H 1.09000 * 113.47105 * 38.06833 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8581 1.1583 -2.4117 7 6 2.6488 -0.7289 -3.5877 8 6 2.7010 0.2544 -4.7588 9 6 1.2823 0.7108 -5.1051 10 6 1.3344 1.6935 -6.2765 11 6 1.9599 1.0059 -7.4918 12 6 3.3785 0.5494 -7.1455 13 6 3.3266 -0.4327 -5.9742 14 6 2.0323 -0.7104 1.2305 15 8 2.3003 -1.8921 1.1815 16 7 2.1837 -0.0323 2.3854 17 6 2.0607 1.3689 2.8146 18 6 3.0782 1.0640 3.9227 19 8 4.4417 1.2256 3.5268 20 6 2.7594 1.7062 5.2483 21 1 1.8766 2.3195 5.3527 22 6 3.5953 1.5116 6.3274 23 7 4.6705 0.7650 6.2000 24 14 3.2004 2.3081 7.9702 25 1 2.3556 1.3899 8.7752 26 1 4.4627 2.5877 8.7009 27 1 2.4693 3.5801 7.7406 28 6 2.5439 -0.3683 3.7712 29 1 -0.3634 0.4439 0.9270 30 1 -0.3634 0.5809 -0.8478 31 1 -0.3634 -1.0246 -0.0791 32 1 2.2489 -1.6318 -1.1526 33 1 3.6479 -1.1214 -3.3985 34 1 1.9759 -1.5506 -3.8325 35 1 3.3031 1.1193 -4.4804 36 1 0.6802 -0.1541 -5.3834 37 1 0.8365 1.2003 -4.2392 38 1 1.9367 2.5585 -5.9986 39 1 0.3237 2.0184 -6.5236 40 1 1.9974 1.7061 -8.3262 41 1 1.3576 0.1409 -7.7696 42 1 3.9808 1.4144 -6.8675 43 1 3.8240 0.0592 -8.0110 44 1 4.3373 -0.7579 -5.7274 45 1 2.7245 -1.2977 -6.2525 46 1 2.4245 2.0829 2.0757 47 1 1.0701 1.6217 3.1927 48 1 5.0801 1.0324 4.2269 49 1 5.2584 0.6278 6.9593 50 1 1.6823 -0.5784 4.4048 51 1 3.3178 -1.1322 3.8455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186833270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:46 Heat of formation + Delta-G solvation = -133.891862 kcal Electronic energy + Delta-G solvation = -29932.426329 eV Core-core repulsion = 25830.969562 eV Total energy + Delta-G solvation = -4101.456767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71303 -40.93733 -39.51281 -38.83007 -36.02722 -35.95488 -34.14345 -33.74475 -32.13565 -31.54327 -30.26067 -28.05293 -27.43887 -26.90444 -24.98805 -23.46559 -22.69783 -21.80121 -21.27795 -20.57837 -20.09770 -19.34235 -18.48737 -17.82990 -17.33740 -17.08956 -16.68585 -16.32937 -16.12299 -16.01652 -15.96619 -15.29212 -15.00055 -14.92769 -14.86222 -14.59830 -14.42315 -14.32907 -13.86185 -13.65123 -13.45165 -13.33073 -13.28790 -13.02519 -12.87534 -12.81366 -12.78558 -12.61406 -12.46478 -12.24598 -12.20516 -11.94311 -11.82019 -11.51894 -11.30437 -11.27895 -10.94499 -10.88328 -10.68909 -10.56310 -10.33938 -10.19112 -9.66951 -8.28927 -6.46585 1.37207 1.46731 1.49911 1.58862 1.59957 1.69658 2.28338 2.40257 2.93718 3.22695 3.67040 3.70780 3.75695 3.85795 3.96434 3.99057 4.07628 4.13134 4.26752 4.35684 4.42383 4.49666 4.55591 4.58564 4.59638 4.63279 4.66952 4.70705 4.73158 4.77607 4.85038 4.87303 4.89536 4.90277 5.04555 5.07657 5.19535 5.21892 5.27175 5.30183 5.34584 5.37092 5.45314 5.59441 5.65148 5.71741 5.87117 6.46530 6.60994 6.75602 6.95136 7.19080 7.27540 7.43277 8.77438 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.002047 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.216950 B =13676.794283 C =13797.037030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.139 3.861 3 H 0.095 0.905 4 N -0.714 5.714 5 C 0.513 3.487 6 O -0.568 6.568 7 C -0.131 4.131 8 C -0.069 4.069 9 C -0.118 4.118 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.111 4.111 14 C 0.530 3.470 15 O -0.586 6.586 16 N -0.631 5.631 17 C 0.112 3.888 18 C 0.217 3.783 19 O -0.586 6.586 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.025 3.975 23 N -0.923 5.923 24 Si 0.974 3.026 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.263 1.263 28 C 0.082 3.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.119 0.881 48 H 0.388 0.612 49 H 0.275 0.725 50 H 0.092 0.908 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -2.139 -21.500 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.113 0.887 4 N -0.368 5.368 5 C 0.302 3.698 6 O -0.447 6.447 7 C -0.170 4.170 8 C -0.088 4.088 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.148 4.148 14 C 0.320 3.680 15 O -0.468 6.468 16 N -0.364 5.364 17 C -0.010 4.010 18 C 0.175 3.825 19 O -0.399 6.399 20 C -0.585 4.585 21 H 0.102 0.898 22 C -0.175 4.175 23 N -0.564 5.564 24 Si 0.799 3.201 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.187 1.187 28 C -0.042 4.042 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.244 0.756 49 H 0.085 0.915 50 H 0.110 0.890 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.057 -1.933 -22.227 23.401 hybrid contribution 0.602 -0.360 1.894 2.020 sum -6.455 -2.293 -20.333 21.456 Atomic orbital electron populations 1.21972 0.90663 1.03511 1.03960 1.20573 0.97052 0.96872 0.82482 0.88695 1.45950 1.67519 1.15002 1.08375 1.21406 0.76409 0.87115 0.84904 1.90658 1.51301 1.17455 1.85316 1.21831 1.04414 0.99982 0.90811 1.20883 0.97314 0.97031 0.93538 1.21653 0.96296 0.99313 0.98238 1.21500 1.00580 0.98071 0.95440 1.21538 0.96328 1.00454 0.97104 1.21525 0.96910 0.99048 0.98274 1.21568 1.01055 0.98426 0.93756 1.20574 0.77127 0.86339 0.84004 1.90607 1.54016 1.17127 1.85059 1.49738 1.65951 1.12452 1.08232 1.23465 1.00539 0.81601 0.95437 1.19891 0.80608 0.90008 0.91987 1.86005 1.17493 1.91773 1.44655 1.21706 1.10661 1.32125 0.94037 0.89800 1.25881 0.94301 0.94300 1.02990 1.69358 1.14581 1.39005 1.33431 0.85303 0.77580 0.79011 0.78241 1.19933 1.21205 1.18733 1.24090 0.98796 1.01868 0.79405 0.90362 0.90262 0.91240 0.74922 0.87230 0.86311 0.92746 0.91601 0.92618 0.93369 0.92022 0.91713 0.91370 0.92885 0.90791 0.91266 0.90636 0.90625 0.86281 0.75596 0.91487 0.89018 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.47 71.98 0.68 -2.86 16 2 C 0.14 4.26 2.83 44.24 0.13 4.38 16 3 H 0.10 3.15 7.38 -2.39 -0.02 3.13 16 4 N -0.71 -19.10 5.05 -446.11 -2.25 -21.35 16 5 C 0.51 13.05 7.51 87.66 0.66 13.71 16 6 O -0.57 -18.14 13.63 -3.01 -0.04 -18.19 16 7 C -0.13 -2.22 5.18 29.85 0.15 -2.07 16 8 C -0.07 -1.22 1.84 -10.79 -0.02 -1.24 16 9 C -0.12 -2.21 4.94 30.59 0.15 -2.06 16 10 C -0.12 -2.00 5.92 30.59 0.18 -1.82 16 11 C -0.12 -1.53 5.92 30.60 0.18 -1.35 16 12 C -0.12 -1.54 5.92 30.58 0.18 -1.36 16 13 C -0.11 -1.43 5.20 30.58 0.16 -1.27 16 14 C 0.53 20.34 7.28 87.66 0.64 20.98 16 15 O -0.59 -25.40 16.80 -3.01 -0.05 -25.45 16 16 N -0.63 -25.67 3.69 -857.99 -3.17 -28.84 16 17 C 0.11 4.28 7.71 83.18 0.64 4.92 16 18 C 0.22 10.21 1.59 -11.16 -0.02 10.19 16 19 O -0.59 -30.76 13.54 -148.98 -2.02 -32.78 16 20 C -0.55 -26.46 8.69 25.60 0.22 -26.24 16 21 H 0.08 3.79 7.81 -2.91 -0.02 3.76 16 22 C 0.03 1.24 5.40 84.65 0.46 1.69 16 23 N -0.92 -47.63 11.01 21.45 0.24 -47.39 16 24 Si 0.97 38.94 29.54 68.60 2.03 40.97 16 25 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 28 C 0.08 3.70 8.04 83.22 0.67 4.37 16 29 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.41 10.31 7.80 -92.71 -0.72 9.59 16 33 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.37 5.95 -2.39 -0.01 1.35 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 47 H 0.12 3.85 8.10 -2.39 -0.02 3.83 16 48 H 0.39 21.09 6.33 -74.06 -0.47 20.62 16 49 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 50 H 0.09 3.90 8.10 -2.39 -0.02 3.88 16 51 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.34 405.98 -0.47 -62.81 By element: Atomic # 1 Polarization: 50.50 SS G_CDS: -0.26 Total: 50.24 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.06 Total: 19.97 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -5.18 Total: -97.58 kcal Atomic # 8 Polarization: -74.30 SS G_CDS: -2.11 Total: -76.41 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -62.34 -0.47 -62.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.081 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds