Wall clock time and date at job start Tue Mar 31 2020 21:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 C 1.53003 * 109.46996 * 120.00146 * 2 1 3 5 5 C 1.50703 * 109.47054 * 185.00081 * 4 2 1 6 6 O 1.21280 * 119.99782 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 2 8 8 C 1.47572 * 134.49163 * 179.97438 * 7 5 4 9 9 C 1.53951 * 86.11583 * 155.36029 * 8 7 5 10 10 O 1.42897 * 113.74300 * 269.15347 * 9 8 7 11 11 C 1.50705 * 113.74111 * 137.95217 * 9 8 7 12 12 H 1.07995 * 119.99667 * 17.19322 * 11 9 8 13 13 C 1.37876 * 119.99899 * 197.19139 * 11 9 8 14 14 N 1.31516 * 119.99917 * 194.36987 * 13 11 9 15 15 Si 1.86802 * 120.00062 * 14.36608 * 13 11 9 16 16 H 1.48496 * 109.47125 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.47124 * 300.00105 * 15 13 11 18 18 H 1.48498 * 109.47140 * 60.00316 * 15 13 11 19 19 C 1.47814 * 134.45384 * 359.86683 * 7 5 4 20 20 N 1.46500 * 109.47345 * 240.00177 * 2 1 3 21 21 C 1.34775 * 120.00090 * 84.99951 * 20 2 1 22 22 O 1.21287 * 120.00000 * 0.02562 * 21 20 2 23 23 C 1.50701 * 120.00373 * 179.97438 * 21 20 2 24 24 C 1.52996 * 109.47130 * 300.00547 * 23 21 20 25 25 C 1.53001 * 109.47347 * 179.97438 * 24 23 21 26 26 C 1.53002 * 109.46595 * 59.99710 * 25 24 23 27 27 C 1.52999 * 109.47368 * 299.99843 * 26 25 24 28 28 C 1.52991 * 109.47428 * 179.97438 * 23 21 20 29 29 H 1.09010 * 109.46796 * 60.00131 * 1 2 3 30 30 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47052 * 300.00116 * 1 2 3 32 32 H 1.08993 * 109.46709 * 65.00030 * 4 2 1 33 33 H 1.09003 * 109.46983 * 305.00372 * 4 2 1 34 34 H 1.09001 * 113.77187 * 41.06251 * 8 7 5 35 35 H 1.08998 * 113.77370 * 269.65834 * 8 7 5 36 36 H 0.96694 * 114.00247 * 174.14447 * 10 9 8 37 37 H 0.96994 * 119.99617 * 354.85921 * 14 13 11 38 38 H 1.09002 * 113.76589 * 90.38278 * 19 7 5 39 39 H 1.09000 * 113.83818 * 318.91814 * 19 7 5 40 40 H 0.96999 * 120.00196 * 264.99993 * 20 2 1 41 41 H 1.09006 * 109.46808 * 59.99692 * 23 21 20 42 42 H 1.09006 * 109.47038 * 299.99555 * 24 23 21 43 43 H 1.09006 * 109.47563 * 59.99371 * 24 23 21 44 44 H 1.08996 * 109.47031 * 299.99996 * 25 24 23 45 45 H 1.09000 * 109.46932 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46692 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47198 * 60.00388 * 26 25 24 48 48 H 1.08996 * 109.46945 * 300.00685 * 27 26 25 49 49 H 1.09001 * 109.46899 * 179.97438 * 27 26 25 50 50 H 1.08997 * 109.47640 * 300.00370 * 28 23 21 51 51 H 1.09006 * 109.46891 * 60.00353 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 8 4.1450 -0.0204 0.4446 7 7 4.2149 -1.1797 2.3349 8 6 5.6393 -1.2730 2.7092 9 6 5.1395 -1.4564 4.1538 10 8 5.0092 -0.2311 4.8774 11 6 5.8841 -2.5169 4.9234 12 1 6.8429 -2.8670 4.5706 13 6 5.3412 -3.0400 6.0777 14 7 6.0916 -3.7436 6.8972 15 14 3.5399 -2.7492 6.4779 16 1 3.2056 -3.4109 7.7646 17 1 3.2873 -1.2903 6.5918 18 1 2.6948 -3.3149 5.3957 19 6 3.8215 -1.9526 3.5318 20 7 2.0184 -0.6906 -1.1962 21 6 2.1471 -0.0182 -2.3571 22 8 1.8591 1.1587 -2.4115 23 6 2.6501 -0.7284 -3.5875 24 6 4.0527 -1.2784 -3.3213 25 6 4.5631 -1.9999 -4.5702 26 6 4.6144 -1.0171 -5.7417 27 6 3.2117 -0.4672 -6.0079 28 6 2.7008 0.2545 -4.7588 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -1.7715 1.2055 33 1 1.6053 -0.2618 2.1370 34 1 6.1965 -0.3497 2.5511 35 1 6.1435 -2.1503 2.3041 36 1 4.6118 -0.3319 5.7532 37 1 7.0059 -3.9578 6.6543 38 1 3.7909 -3.0299 3.3686 39 1 2.9298 -1.5710 4.0292 40 1 2.2491 -1.6317 -1.1527 41 1 1.9779 -1.5508 -3.8326 42 1 4.7250 -0.4560 -3.0762 43 1 4.0162 -1.9788 -2.4869 44 1 3.8909 -2.8222 -4.8150 45 1 5.5626 -2.3913 -4.3807 46 1 4.9776 -1.5313 -6.6316 47 1 5.2867 -0.1948 -5.4970 48 1 2.5395 -1.2896 -6.2526 49 1 3.2484 0.2333 -6.8422 50 1 1.7014 0.6460 -4.9483 51 1 3.3728 1.0772 -4.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193973726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:02 Heat of formation + Delta-G solvation = -111.992782 kcal Electronic energy + Delta-G solvation = -30601.830150 eV Core-core repulsion = 26501.322999 eV Total energy + Delta-G solvation = -4100.507152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40536 -39.73629 -38.17974 -37.46232 -35.53514 -34.25388 -32.68229 -32.27555 -30.93985 -30.57996 -29.34926 -27.56374 -25.72342 -24.78593 -24.04339 -22.76611 -21.52522 -20.46757 -20.06966 -19.77270 -18.65942 -18.02278 -17.22766 -16.68439 -16.42651 -15.83322 -15.57009 -15.18743 -15.07144 -14.72491 -14.38692 -14.24275 -14.09865 -13.84641 -13.63026 -13.41901 -13.07236 -12.86250 -12.72147 -12.61681 -12.45154 -12.42564 -12.22444 -12.13882 -11.81771 -11.79036 -11.46197 -11.32602 -11.29487 -11.06956 -10.84609 -10.83545 -10.62032 -10.48641 -10.30916 -10.05814 -9.59056 -9.55887 -9.44090 -9.09258 -8.99211 -8.53563 -8.06409 -6.78789 -4.52702 2.72916 2.99745 3.02553 3.09435 3.18902 3.21619 3.37105 4.12038 4.43882 4.46997 4.52920 4.61023 4.66383 4.80126 4.95860 4.99816 5.04436 5.12036 5.13179 5.18848 5.25271 5.29823 5.32886 5.39613 5.40831 5.44464 5.53461 5.59081 5.60835 5.80924 5.87326 5.88133 5.88782 5.95127 5.95473 5.99915 6.03052 6.10435 6.12360 6.15977 6.25043 6.25971 6.37641 6.53781 6.65135 7.49841 7.54688 8.02518 8.22705 8.31745 8.51273 8.55455 8.65443 9.23085 10.57465 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002687 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.289553 B =10418.358569 C =11316.650461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.095 0.905 4 C -0.147 4.147 5 C 0.525 3.475 6 O -0.547 6.547 7 N -0.633 5.633 8 C 0.129 3.871 9 C 0.199 3.801 10 O -0.566 6.566 11 C -0.617 4.617 12 H 0.069 0.931 13 C 0.035 3.965 14 N -0.886 5.886 15 Si 1.041 2.959 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.273 1.273 19 C 0.056 3.944 20 N -0.713 5.713 21 C 0.524 3.476 22 O -0.544 6.544 23 C -0.104 4.104 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.367 0.633 37 H 0.274 0.726 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.396 0.604 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 0.633 -18.402 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 H 0.113 0.887 4 C -0.188 4.188 5 C 0.314 3.686 6 O -0.425 6.425 7 N -0.368 5.368 8 C 0.008 3.992 9 C 0.158 3.842 10 O -0.374 6.374 11 C -0.655 4.655 12 H 0.088 0.912 13 C -0.173 4.173 14 N -0.518 5.518 15 Si 0.869 3.131 16 H -0.204 1.204 17 H -0.207 1.207 18 H -0.199 1.199 19 C -0.067 4.067 20 N -0.364 5.364 21 C 0.311 3.689 22 O -0.421 6.421 23 C -0.126 4.126 24 C -0.146 4.146 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.156 4.156 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.216 0.784 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.229 0.771 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.306 1.863 -18.429 21.701 hybrid contribution 1.020 -0.667 -0.404 1.285 sum -10.286 1.196 -18.833 21.492 Atomic orbital electron populations 1.22182 0.94936 1.02117 1.02766 1.20646 0.93152 0.98155 0.82683 0.88667 1.21987 0.93693 1.03149 0.99937 1.20130 0.89250 0.79184 0.80029 1.90697 1.70262 1.43516 1.38067 1.50195 1.10179 1.53003 1.23391 1.23183 0.82578 1.01154 0.92327 1.20408 0.90112 0.84183 0.89472 1.86382 1.85157 1.33267 1.32603 1.22192 1.07809 1.23064 1.12462 0.91237 1.25849 1.05382 0.94261 0.91847 1.70804 1.10132 1.37074 1.33834 0.84128 0.75000 0.76616 0.77360 1.20374 1.20650 1.19922 1.24699 1.01306 0.96671 0.83984 1.45881 1.67303 1.13625 1.09542 1.20527 0.76760 0.87153 0.84470 1.90666 1.50311 1.15953 1.85193 1.21333 0.98387 0.99238 0.93595 1.21494 0.94680 1.00542 0.97923 1.21530 1.01307 0.97964 0.94682 1.21569 0.97218 0.99121 0.98060 1.21564 0.96637 0.99899 0.97523 1.21340 1.02212 0.97352 0.92737 0.91830 0.92427 0.91443 0.88786 0.87696 0.90958 0.89233 0.78381 0.91516 0.88758 0.91682 0.77070 0.88983 0.91035 0.91548 0.91926 0.91634 0.92076 0.91831 0.92062 0.91800 0.91423 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.16 2.04 2.14 -67.93 -0.15 1.89 16 3 H 0.10 1.54 7.39 -51.93 -0.38 1.16 16 4 C -0.15 -1.88 4.99 -27.88 -0.14 -2.02 16 5 C 0.52 9.22 7.92 -10.98 -0.09 9.13 16 6 O -0.55 -11.22 16.08 5.56 0.09 -11.13 16 7 N -0.63 -11.88 3.61 -178.11 -0.64 -12.52 16 8 C 0.13 2.64 8.23 -2.97 -0.02 2.62 16 9 C 0.20 4.36 1.07 -90.83 -0.10 4.27 16 10 O -0.57 -12.75 13.47 -35.23 -0.47 -13.23 16 11 C -0.62 -15.47 9.04 -34.44 -0.31 -15.78 16 12 H 0.07 1.89 8.06 -52.49 -0.42 1.46 16 13 C 0.03 0.88 5.44 -17.82 -0.10 0.78 16 14 N -0.89 -24.49 13.70 55.43 0.76 -23.73 16 15 Si 1.04 21.20 24.56 -169.99 -4.17 17.02 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -5.15 5.81 56.52 0.33 -4.82 16 18 H -0.27 -4.96 6.48 56.52 0.37 -4.60 16 19 C 0.06 1.05 5.39 -2.83 -0.02 1.04 16 20 N -0.71 -8.80 4.11 -53.80 -0.22 -9.02 16 21 C 0.52 7.19 7.12 -10.99 -0.08 7.11 16 22 O -0.54 -9.47 15.64 5.55 0.09 -9.38 16 23 C -0.10 -1.09 2.52 -91.78 -0.23 -1.32 16 24 C -0.11 -1.13 5.10 -26.73 -0.14 -1.26 16 25 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 26 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 27 C -0.12 -0.95 5.92 -26.71 -0.16 -1.11 16 28 C -0.10 -1.02 4.50 -26.71 -0.12 -1.14 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 36 H 0.37 7.61 6.07 45.56 0.28 7.88 16 37 H 0.27 7.60 8.73 -40.82 -0.36 7.24 16 38 H 0.09 1.70 7.97 -51.93 -0.41 1.29 16 39 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16 40 H 0.40 4.11 8.02 -40.82 -0.33 3.78 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.69 7.57 -51.93 -0.39 0.30 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 51 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -31.46 400.22 -8.61 -40.08 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -8.46 Total: 15.25 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.61 Total: 0.63 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.11 Total: -45.27 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.30 Total: -33.74 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.17 Total: 17.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.46 -8.61 -40.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.914 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds