Wall clock time and date at job start Tue Mar 31 2020 21:02:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47259 * 2 1
4 4 C 1.53003 * 109.46996 * 120.00146 * 2 1 3
5 5 C 1.50703 * 109.47054 * 185.00081 * 4 2 1
6 6 O 1.21280 * 119.99782 * 0.02562 * 5 4 2
7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 2
8 8 C 1.47572 * 134.49163 * 179.97438 * 7 5 4
9 9 C 1.53951 * 86.11583 * 155.36029 * 8 7 5
10 10 O 1.42897 * 113.74300 * 269.15347 * 9 8 7
11 11 C 1.50705 * 113.74111 * 137.95217 * 9 8 7
12 12 H 1.07995 * 119.99667 * 17.19322 * 11 9 8
13 13 C 1.37876 * 119.99899 * 197.19139 * 11 9 8
14 14 N 1.31516 * 119.99917 * 194.36987 * 13 11 9
15 15 Si 1.86802 * 120.00062 * 14.36608 * 13 11 9
16 16 H 1.48496 * 109.47125 * 180.02562 * 15 13 11
17 17 H 1.48497 * 109.47124 * 300.00105 * 15 13 11
18 18 H 1.48498 * 109.47140 * 60.00316 * 15 13 11
19 19 C 1.47814 * 134.45384 * 359.86683 * 7 5 4
20 20 N 1.46500 * 109.47345 * 240.00177 * 2 1 3
21 21 C 1.34775 * 120.00090 * 84.99951 * 20 2 1
22 22 O 1.21287 * 120.00000 * 0.02562 * 21 20 2
23 23 C 1.50701 * 120.00373 * 179.97438 * 21 20 2
24 24 C 1.52996 * 109.47130 * 300.00547 * 23 21 20
25 25 C 1.53001 * 109.47347 * 179.97438 * 24 23 21
26 26 C 1.53002 * 109.46595 * 59.99710 * 25 24 23
27 27 C 1.52999 * 109.47368 * 299.99843 * 26 25 24
28 28 C 1.52991 * 109.47428 * 179.97438 * 23 21 20
29 29 H 1.09010 * 109.46796 * 60.00131 * 1 2 3
30 30 H 1.08997 * 109.46925 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47052 * 300.00116 * 1 2 3
32 32 H 1.08993 * 109.46709 * 65.00030 * 4 2 1
33 33 H 1.09003 * 109.46983 * 305.00372 * 4 2 1
34 34 H 1.09001 * 113.77187 * 41.06251 * 8 7 5
35 35 H 1.08998 * 113.77370 * 269.65834 * 8 7 5
36 36 H 0.96694 * 114.00247 * 174.14447 * 10 9 8
37 37 H 0.96994 * 119.99617 * 354.85921 * 14 13 11
38 38 H 1.09002 * 113.76589 * 90.38278 * 19 7 5
39 39 H 1.09000 * 113.83818 * 318.91814 * 19 7 5
40 40 H 0.96999 * 120.00196 * 264.99993 * 20 2 1
41 41 H 1.09006 * 109.46808 * 59.99692 * 23 21 20
42 42 H 1.09006 * 109.47038 * 299.99555 * 24 23 21
43 43 H 1.09006 * 109.47563 * 59.99371 * 24 23 21
44 44 H 1.08996 * 109.47031 * 299.99996 * 25 24 23
45 45 H 1.09000 * 109.46932 * 179.97438 * 25 24 23
46 46 H 1.09005 * 109.46692 * 180.02562 * 26 25 24
47 47 H 1.08996 * 109.47198 * 60.00388 * 26 25 24
48 48 H 1.08996 * 109.46945 * 300.00685 * 27 26 25
49 49 H 1.09001 * 109.46899 * 179.97438 * 27 26 25
50 50 H 1.08997 * 109.47640 * 300.00370 * 28 23 21
51 51 H 1.09006 * 109.46891 * 60.00353 * 28 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 3.5419 -0.6150 1.3128
6 8 4.1450 -0.0204 0.4446
7 7 4.2149 -1.1797 2.3349
8 6 5.6393 -1.2730 2.7092
9 6 5.1395 -1.4564 4.1538
10 8 5.0092 -0.2311 4.8774
11 6 5.8841 -2.5169 4.9234
12 1 6.8429 -2.8670 4.5706
13 6 5.3412 -3.0400 6.0777
14 7 6.0916 -3.7436 6.8972
15 14 3.5399 -2.7492 6.4779
16 1 3.2056 -3.4109 7.7646
17 1 3.2873 -1.2903 6.5918
18 1 2.6948 -3.3149 5.3957
19 6 3.8215 -1.9526 3.5318
20 7 2.0184 -0.6906 -1.1962
21 6 2.1471 -0.0182 -2.3571
22 8 1.8591 1.1587 -2.4115
23 6 2.6501 -0.7284 -3.5875
24 6 4.0527 -1.2784 -3.3213
25 6 4.5631 -1.9999 -4.5702
26 6 4.6144 -1.0171 -5.7417
27 6 3.2117 -0.4672 -6.0079
28 6 2.7008 0.2545 -4.7588
29 1 -0.3633 0.5139 -0.8901
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8899
32 1 1.7516 -1.7715 1.2055
33 1 1.6053 -0.2618 2.1370
34 1 6.1965 -0.3497 2.5511
35 1 6.1435 -2.1503 2.3041
36 1 4.6118 -0.3319 5.7532
37 1 7.0059 -3.9578 6.6543
38 1 3.7909 -3.0299 3.3686
39 1 2.9298 -1.5710 4.0292
40 1 2.2491 -1.6317 -1.1527
41 1 1.9779 -1.5508 -3.8326
42 1 4.7250 -0.4560 -3.0762
43 1 4.0162 -1.9788 -2.4869
44 1 3.8909 -2.8222 -4.8150
45 1 5.5626 -2.3913 -4.3807
46 1 4.9776 -1.5313 -6.6316
47 1 5.2867 -0.1948 -5.4970
48 1 2.5395 -1.2896 -6.2526
49 1 3.2484 0.2333 -6.8422
50 1 1.7014 0.6460 -4.9483
51 1 3.3728 1.0772 -4.5139
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000193973726.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:02:02
Heat of formation + Delta-G solvation = -111.992782 kcal
Electronic energy + Delta-G solvation = -30601.830150 eV
Core-core repulsion = 26501.322999 eV
Total energy + Delta-G solvation = -4100.507152 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.40536 -39.73629 -38.17974 -37.46232 -35.53514 -34.25388 -32.68229 -32.27555
-30.93985 -30.57996 -29.34926 -27.56374 -25.72342 -24.78593 -24.04339 -22.76611
-21.52522 -20.46757 -20.06966 -19.77270 -18.65942 -18.02278 -17.22766 -16.68439
-16.42651 -15.83322 -15.57009 -15.18743 -15.07144 -14.72491 -14.38692 -14.24275
-14.09865 -13.84641 -13.63026 -13.41901 -13.07236 -12.86250 -12.72147 -12.61681
-12.45154 -12.42564 -12.22444 -12.13882 -11.81771 -11.79036 -11.46197 -11.32602
-11.29487 -11.06956 -10.84609 -10.83545 -10.62032 -10.48641 -10.30916 -10.05814
-9.59056 -9.55887 -9.44090 -9.09258 -8.99211 -8.53563 -8.06409 -6.78789
-4.52702 2.72916 2.99745 3.02553 3.09435 3.18902 3.21619 3.37105
4.12038 4.43882 4.46997 4.52920 4.61023 4.66383 4.80126 4.95860
4.99816 5.04436 5.12036 5.13179 5.18848 5.25271 5.29823 5.32886
5.39613 5.40831 5.44464 5.53461 5.59081 5.60835 5.80924 5.87326
5.88133 5.88782 5.95127 5.95473 5.99915 6.03052 6.10435 6.12360
6.15977 6.25043 6.25971 6.37641 6.53781 6.65135 7.49841 7.54688
8.02518 8.22705 8.31745 8.51273 8.55455 8.65443 9.23085 10.57465
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.017658 B = 0.002687 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.289553 B =10418.358569 C =11316.650461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.159 3.841
3 H 0.095 0.905
4 C -0.147 4.147
5 C 0.525 3.475
6 O -0.547 6.547
7 N -0.633 5.633
8 C 0.129 3.871
9 C 0.199 3.801
10 O -0.566 6.566
11 C -0.617 4.617
12 H 0.069 0.931
13 C 0.035 3.965
14 N -0.886 5.886
15 Si 1.041 2.959
16 H -0.278 1.278
17 H -0.280 1.280
18 H -0.273 1.273
19 C 0.056 3.944
20 N -0.713 5.713
21 C 0.524 3.476
22 O -0.544 6.544
23 C -0.104 4.104
24 C -0.109 4.109
25 C -0.117 4.117
26 C -0.122 4.122
27 C -0.119 4.119
28 C -0.098 4.098
29 H 0.063 0.937
30 H 0.057 0.943
31 H 0.067 0.933
32 H 0.094 0.906
33 H 0.105 0.895
34 H 0.072 0.928
35 H 0.090 0.910
36 H 0.367 0.633
37 H 0.274 0.726
38 H 0.094 0.906
39 H 0.065 0.935
40 H 0.396 0.604
41 H 0.092 0.908
42 H 0.071 0.929
43 H 0.066 0.934
44 H 0.062 0.938
45 H 0.065 0.935
46 H 0.060 0.940
47 H 0.063 0.937
48 H 0.061 0.939
49 H 0.063 0.937
50 H 0.067 0.933
51 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.435 0.633 -18.402 21.165
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.054 3.946
3 H 0.113 0.887
4 C -0.188 4.188
5 C 0.314 3.686
6 O -0.425 6.425
7 N -0.368 5.368
8 C 0.008 3.992
9 C 0.158 3.842
10 O -0.374 6.374
11 C -0.655 4.655
12 H 0.088 0.912
13 C -0.173 4.173
14 N -0.518 5.518
15 Si 0.869 3.131
16 H -0.204 1.204
17 H -0.207 1.207
18 H -0.199 1.199
19 C -0.067 4.067
20 N -0.364 5.364
21 C 0.311 3.689
22 O -0.421 6.421
23 C -0.126 4.126
24 C -0.146 4.146
25 C -0.155 4.155
26 C -0.160 4.160
27 C -0.156 4.156
28 C -0.136 4.136
29 H 0.082 0.918
30 H 0.076 0.924
31 H 0.086 0.914
32 H 0.112 0.888
33 H 0.123 0.877
34 H 0.090 0.910
35 H 0.108 0.892
36 H 0.216 0.784
37 H 0.085 0.915
38 H 0.112 0.888
39 H 0.083 0.917
40 H 0.229 0.771
41 H 0.110 0.890
42 H 0.090 0.910
43 H 0.085 0.915
44 H 0.081 0.919
45 H 0.084 0.916
46 H 0.079 0.921
47 H 0.082 0.918
48 H 0.079 0.921
49 H 0.082 0.918
50 H 0.086 0.914
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -11.306 1.863 -18.429 21.701
hybrid contribution 1.020 -0.667 -0.404 1.285
sum -10.286 1.196 -18.833 21.492
Atomic orbital electron populations
1.22182 0.94936 1.02117 1.02766 1.20646 0.93152 0.98155 0.82683
0.88667 1.21987 0.93693 1.03149 0.99937 1.20130 0.89250 0.79184
0.80029 1.90697 1.70262 1.43516 1.38067 1.50195 1.10179 1.53003
1.23391 1.23183 0.82578 1.01154 0.92327 1.20408 0.90112 0.84183
0.89472 1.86382 1.85157 1.33267 1.32603 1.22192 1.07809 1.23064
1.12462 0.91237 1.25849 1.05382 0.94261 0.91847 1.70804 1.10132
1.37074 1.33834 0.84128 0.75000 0.76616 0.77360 1.20374 1.20650
1.19922 1.24699 1.01306 0.96671 0.83984 1.45881 1.67303 1.13625
1.09542 1.20527 0.76760 0.87153 0.84470 1.90666 1.50311 1.15953
1.85193 1.21333 0.98387 0.99238 0.93595 1.21494 0.94680 1.00542
0.97923 1.21530 1.01307 0.97964 0.94682 1.21569 0.97218 0.99121
0.98060 1.21564 0.96637 0.99899 0.97523 1.21340 1.02212 0.97352
0.92737 0.91830 0.92427 0.91443 0.88786 0.87696 0.90958 0.89233
0.78381 0.91516 0.88758 0.91682 0.77070 0.88983 0.91035 0.91548
0.91926 0.91634 0.92076 0.91831 0.92062 0.91800 0.91423 0.91154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16
2 C 0.16 2.04 2.14 -67.93 -0.15 1.89 16
3 H 0.10 1.54 7.39 -51.93 -0.38 1.16 16
4 C -0.15 -1.88 4.99 -27.88 -0.14 -2.02 16
5 C 0.52 9.22 7.92 -10.98 -0.09 9.13 16
6 O -0.55 -11.22 16.08 5.56 0.09 -11.13 16
7 N -0.63 -11.88 3.61 -178.11 -0.64 -12.52 16
8 C 0.13 2.64 8.23 -2.97 -0.02 2.62 16
9 C 0.20 4.36 1.07 -90.83 -0.10 4.27 16
10 O -0.57 -12.75 13.47 -35.23 -0.47 -13.23 16
11 C -0.62 -15.47 9.04 -34.44 -0.31 -15.78 16
12 H 0.07 1.89 8.06 -52.49 -0.42 1.46 16
13 C 0.03 0.88 5.44 -17.82 -0.10 0.78 16
14 N -0.89 -24.49 13.70 55.43 0.76 -23.73 16
15 Si 1.04 21.20 24.56 -169.99 -4.17 17.02 16
16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16
17 H -0.28 -5.15 5.81 56.52 0.33 -4.82 16
18 H -0.27 -4.96 6.48 56.52 0.37 -4.60 16
19 C 0.06 1.05 5.39 -2.83 -0.02 1.04 16
20 N -0.71 -8.80 4.11 -53.80 -0.22 -9.02 16
21 C 0.52 7.19 7.12 -10.99 -0.08 7.11 16
22 O -0.54 -9.47 15.64 5.55 0.09 -9.38 16
23 C -0.10 -1.09 2.52 -91.78 -0.23 -1.32 16
24 C -0.11 -1.13 5.10 -26.73 -0.14 -1.26 16
25 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16
26 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16
27 C -0.12 -0.95 5.92 -26.71 -0.16 -1.11 16
28 C -0.10 -1.02 4.50 -26.71 -0.12 -1.14 16
29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16
34 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16
35 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16
36 H 0.37 7.61 6.07 45.56 0.28 7.88 16
37 H 0.27 7.60 8.73 -40.82 -0.36 7.24 16
38 H 0.09 1.70 7.97 -51.93 -0.41 1.29 16
39 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16
40 H 0.40 4.11 8.02 -40.82 -0.33 3.78 16
41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
43 H 0.07 0.69 7.57 -51.93 -0.39 0.30 16
44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
50 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16
51 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16
LS Contribution 400.22 15.07 6.03 6.03
Total: -1.00 -31.46 400.22 -8.61 -40.08
By element:
Atomic # 1 Polarization: 23.71 SS G_CDS: -8.46 Total: 15.25 kcal
Atomic # 6 Polarization: 2.24 SS G_CDS: -1.61 Total: 0.63 kcal
Atomic # 7 Polarization: -45.17 SS G_CDS: -0.11 Total: -45.27 kcal
Atomic # 8 Polarization: -33.44 SS G_CDS: -0.30 Total: -33.74 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -4.17 Total: 17.02 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -31.46 -8.61 -40.08 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193973726.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.914 kcal
(2) G-P(sol) polarization free energy of solvation -31.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds