Wall clock time and date at job start Tue Mar 31 2020 21:02:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47259 * 2 1
4 4 C 1.53003 * 109.46996 * 120.00146 * 2 1 3
5 5 C 1.50703 * 109.47054 * 185.00081 * 4 2 1
6 6 O 1.21280 * 119.99782 * 0.02562 * 5 4 2
7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 2
8 8 C 1.47572 * 134.49163 * 179.97438 * 7 5 4
9 9 C 1.53951 * 86.11583 * 155.36029 * 8 7 5
10 10 O 1.42897 * 113.74300 * 269.15347 * 9 8 7
11 11 C 1.50705 * 113.74111 * 137.95217 * 9 8 7
12 12 H 1.07995 * 119.99667 * 17.19322 * 11 9 8
13 13 C 1.37876 * 119.99899 * 197.19139 * 11 9 8
14 14 N 1.31516 * 119.99917 * 194.36987 * 13 11 9
15 15 Si 1.86802 * 120.00062 * 14.36608 * 13 11 9
16 16 H 1.48496 * 109.47125 * 180.02562 * 15 13 11
17 17 H 1.48497 * 109.47124 * 300.00105 * 15 13 11
18 18 H 1.48498 * 109.47140 * 60.00316 * 15 13 11
19 19 C 1.47814 * 134.45384 * 359.86683 * 7 5 4
20 20 N 1.46500 * 109.47345 * 240.00177 * 2 1 3
21 21 C 1.34775 * 120.00090 * 84.99951 * 20 2 1
22 22 O 1.21287 * 120.00000 * 0.02562 * 21 20 2
23 23 C 1.50701 * 120.00373 * 179.97438 * 21 20 2
24 24 C 1.52996 * 109.47130 * 300.00547 * 23 21 20
25 25 C 1.53001 * 109.47347 * 179.97438 * 24 23 21
26 26 C 1.53002 * 109.46595 * 59.99710 * 25 24 23
27 27 C 1.52999 * 109.47368 * 299.99843 * 26 25 24
28 28 C 1.52991 * 109.47428 * 179.97438 * 23 21 20
29 29 H 1.09010 * 109.46796 * 60.00131 * 1 2 3
30 30 H 1.08997 * 109.46925 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47052 * 300.00116 * 1 2 3
32 32 H 1.08993 * 109.46709 * 65.00030 * 4 2 1
33 33 H 1.09003 * 109.46983 * 305.00372 * 4 2 1
34 34 H 1.09001 * 113.77187 * 41.06251 * 8 7 5
35 35 H 1.08998 * 113.77370 * 269.65834 * 8 7 5
36 36 H 0.96694 * 114.00247 * 174.14447 * 10 9 8
37 37 H 0.96994 * 119.99617 * 354.85921 * 14 13 11
38 38 H 1.09002 * 113.76589 * 90.38278 * 19 7 5
39 39 H 1.09000 * 113.83818 * 318.91814 * 19 7 5
40 40 H 0.96999 * 120.00196 * 264.99993 * 20 2 1
41 41 H 1.09006 * 109.46808 * 59.99692 * 23 21 20
42 42 H 1.09006 * 109.47038 * 299.99555 * 24 23 21
43 43 H 1.09006 * 109.47563 * 59.99371 * 24 23 21
44 44 H 1.08996 * 109.47031 * 299.99996 * 25 24 23
45 45 H 1.09000 * 109.46932 * 179.97438 * 25 24 23
46 46 H 1.09005 * 109.46692 * 180.02562 * 26 25 24
47 47 H 1.08996 * 109.47198 * 60.00388 * 26 25 24
48 48 H 1.08996 * 109.46945 * 300.00685 * 27 26 25
49 49 H 1.09001 * 109.46899 * 179.97438 * 27 26 25
50 50 H 1.08997 * 109.47640 * 300.00370 * 28 23 21
51 51 H 1.09006 * 109.46891 * 60.00353 * 28 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 3.5419 -0.6150 1.3128
6 8 4.1450 -0.0204 0.4446
7 7 4.2149 -1.1797 2.3349
8 6 5.6393 -1.2730 2.7092
9 6 5.1395 -1.4564 4.1538
10 8 5.0092 -0.2311 4.8774
11 6 5.8841 -2.5169 4.9234
12 1 6.8429 -2.8670 4.5706
13 6 5.3412 -3.0400 6.0777
14 7 6.0916 -3.7436 6.8972
15 14 3.5399 -2.7492 6.4779
16 1 3.2056 -3.4109 7.7646
17 1 3.2873 -1.2903 6.5918
18 1 2.6948 -3.3149 5.3957
19 6 3.8215 -1.9526 3.5318
20 7 2.0184 -0.6906 -1.1962
21 6 2.1471 -0.0182 -2.3571
22 8 1.8591 1.1587 -2.4115
23 6 2.6501 -0.7284 -3.5875
24 6 4.0527 -1.2784 -3.3213
25 6 4.5631 -1.9999 -4.5702
26 6 4.6144 -1.0171 -5.7417
27 6 3.2117 -0.4672 -6.0079
28 6 2.7008 0.2545 -4.7588
29 1 -0.3633 0.5139 -0.8901
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8899
32 1 1.7516 -1.7715 1.2055
33 1 1.6053 -0.2618 2.1370
34 1 6.1965 -0.3497 2.5511
35 1 6.1435 -2.1503 2.3041
36 1 4.6118 -0.3319 5.7532
37 1 7.0059 -3.9578 6.6543
38 1 3.7909 -3.0299 3.3686
39 1 2.9298 -1.5710 4.0292
40 1 2.2491 -1.6317 -1.1527
41 1 1.9779 -1.5508 -3.8326
42 1 4.7250 -0.4560 -3.0762
43 1 4.0162 -1.9788 -2.4869
44 1 3.8909 -2.8222 -4.8150
45 1 5.5626 -2.3913 -4.3807
46 1 4.9776 -1.5313 -6.6316
47 1 5.2867 -0.1948 -5.4970
48 1 2.5395 -1.2896 -6.2526
49 1 3.2484 0.2333 -6.8422
50 1 1.7014 0.6460 -4.9483
51 1 3.3728 1.0772 -4.5139
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000193973726.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:02:01
Heat of formation + Delta-G solvation = -135.594014 kcal
Electronic energy + Delta-G solvation = -30602.853576 eV
Core-core repulsion = 26501.322999 eV
Total energy + Delta-G solvation = -4101.530578 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.58248 -41.07849 -39.46027 -38.53136 -36.67865 -35.94897 -34.63723 -33.24651
-31.72342 -31.52726 -30.67319 -28.85404 -27.23239 -26.47106 -24.96749 -23.51957
-22.55377 -21.64147 -21.42077 -20.62839 -20.11019 -19.89534 -18.24084 -18.09477
-17.54512 -17.43542 -16.69282 -16.50408 -16.40237 -15.83756 -15.47148 -15.24272
-15.17568 -15.05578 -14.79171 -14.72205 -14.46783 -14.15964 -13.95721 -13.81848
-13.61313 -13.50170 -13.19464 -13.11678 -12.95653 -12.90352 -12.79362 -12.42157
-12.26514 -12.13384 -12.08593 -12.01549 -11.73754 -11.56738 -11.38684 -11.30053
-11.04779 -10.99434 -10.84717 -10.62257 -10.31409 -10.03565 -9.65253 -8.81583
-6.58410 1.45000 1.52616 1.63139 1.66390 1.69080 1.88783 2.26388
2.46906 2.92385 3.25003 3.56988 3.58999 3.66004 3.73250 3.76806
3.78475 4.14214 4.21654 4.25671 4.26569 4.32419 4.36390 4.38325
4.42594 4.52359 4.55733 4.57898 4.59670 4.63927 4.65252 4.66468
4.74781 4.88833 4.93152 5.02342 5.04677 5.08775 5.14429 5.21166
5.22441 5.28792 5.31845 5.36329 5.51091 5.57269 5.64391 5.91493
6.40660 6.57039 6.78880 6.96797 7.14254 7.28991 7.30923 8.53174
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.017658 B = 0.002687 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.289553 B =10418.358569 C =11316.650461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.158 3.842
3 H 0.053 0.947
4 C -0.135 4.135
5 C 0.520 3.480
6 O -0.584 6.584
7 N -0.632 5.632
8 C 0.123 3.877
9 C 0.188 3.812
10 O -0.576 6.576
11 C -0.623 4.623
12 H 0.027 0.973
13 C -0.011 4.011
14 N -0.922 5.922
15 Si 1.072 2.928
16 H -0.292 1.292
17 H -0.246 1.246
18 H -0.225 1.225
19 C 0.072 3.928
20 N -0.707 5.707
21 C 0.515 3.485
22 O -0.590 6.590
23 C -0.097 4.097
24 C -0.104 4.104
25 C -0.113 4.113
26 C -0.123 4.123
27 C -0.112 4.112
28 C -0.097 4.097
29 H 0.046 0.954
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.131 0.869
33 H 0.128 0.872
34 H 0.055 0.945
35 H 0.093 0.907
36 H 0.374 0.626
37 H 0.256 0.744
38 H 0.107 0.893
39 H 0.097 0.903
40 H 0.407 0.593
41 H 0.124 0.876
42 H 0.036 0.964
43 H 0.067 0.933
44 H 0.084 0.916
45 H 0.065 0.935
46 H 0.079 0.921
47 H 0.047 0.953
48 H 0.080 0.920
49 H 0.070 0.930
50 H 0.062 0.938
51 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.102 -0.718 -19.441 24.028
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.052 3.948
3 H 0.072 0.928
4 C -0.175 4.175
5 C 0.312 3.688
6 O -0.465 6.465
7 N -0.367 5.367
8 C 0.000 4.000
9 C 0.147 3.853
10 O -0.385 6.385
11 C -0.661 4.661
12 H 0.046 0.954
13 C -0.211 4.211
14 N -0.556 5.556
15 Si 0.890 3.110
16 H -0.219 1.219
17 H -0.171 1.171
18 H -0.148 1.148
19 C -0.050 4.050
20 N -0.357 5.357
21 C 0.303 3.697
22 O -0.471 6.471
23 C -0.118 4.118
24 C -0.142 4.142
25 C -0.150 4.150
26 C -0.160 4.160
27 C -0.149 4.149
28 C -0.136 4.136
29 H 0.065 0.935
30 H 0.101 0.899
31 H 0.101 0.899
32 H 0.149 0.851
33 H 0.146 0.854
34 H 0.074 0.926
35 H 0.111 0.889
36 H 0.225 0.775
37 H 0.065 0.935
38 H 0.125 0.875
39 H 0.115 0.885
40 H 0.243 0.757
41 H 0.142 0.858
42 H 0.055 0.945
43 H 0.086 0.914
44 H 0.102 0.898
45 H 0.084 0.916
46 H 0.098 0.902
47 H 0.066 0.934
48 H 0.099 0.901
49 H 0.089 0.911
50 H 0.080 0.920
51 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -14.962 0.493 -19.488 24.574
hybrid contribution 2.346 -0.192 -0.075 2.355
sum -12.617 0.301 -19.563 23.280
Atomic orbital electron populations
1.22088 0.92331 1.03723 1.02752 1.20628 0.95011 0.96096 0.83030
0.92847 1.22047 0.89296 1.05582 1.00554 1.21056 0.91216 0.77727
0.78809 1.90700 1.71546 1.44828 1.39388 1.50159 1.08982 1.53425
1.24102 1.23106 0.84159 1.00543 0.92225 1.20411 0.92593 0.83090
0.89235 1.86367 1.85558 1.33344 1.33249 1.22289 1.06649 1.23905
1.13208 0.95420 1.27456 1.09346 0.92876 0.91462 1.70962 1.09654
1.39664 1.35304 0.83874 0.70142 0.78839 0.78098 1.21874 1.17102
1.14845 1.24532 1.00112 0.97376 0.82978 1.45883 1.66576 1.14109
1.09145 1.21159 0.76037 0.86790 0.85679 1.90641 1.52420 1.17995
1.86001 1.21367 0.98750 0.99711 0.92011 1.21444 0.94001 0.99502
0.99264 1.21526 1.01749 0.98265 0.93505 1.21587 0.97027 0.98747
0.98690 1.21538 0.96783 1.00376 0.96237 1.21315 1.01285 0.96885
0.94068 0.93515 0.89883 0.89877 0.85117 0.85389 0.92643 0.88919
0.77526 0.93473 0.87549 0.88494 0.75707 0.85829 0.94474 0.91435
0.89766 0.91594 0.90228 0.93434 0.90111 0.91124 0.91955 0.94122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16
2 C 0.16 3.73 2.14 44.99 0.10 3.83 16
3 H 0.05 1.73 7.39 -2.39 -0.02 1.72 16
4 C -0.14 -2.89 4.99 29.85 0.15 -2.74 16
5 C 0.52 17.17 7.92 87.66 0.69 17.86 16
6 O -0.58 -23.93 16.08 -3.03 -0.05 -23.98 16
7 N -0.63 -22.24 3.61 -839.65 -3.03 -25.27 16
8 C 0.12 5.01 8.23 86.49 0.71 5.72 16
9 C 0.19 7.97 1.07 -10.87 -0.01 7.96 16
10 O -0.58 -25.00 13.47 -148.98 -2.01 -27.01 16
11 C -0.62 -31.60 9.04 25.60 0.23 -31.37 16
12 H 0.03 1.58 8.06 -2.91 -0.02 1.56 16
13 C -0.01 -0.55 5.44 84.65 0.46 -0.09 16
14 N -0.92 -52.29 13.70 21.45 0.29 -51.99 16
15 Si 1.07 39.45 24.56 68.60 1.68 41.13 16
16 H -0.29 -11.50 7.11 99.48 0.71 -10.80 16
17 H -0.25 -7.72 5.81 99.48 0.58 -7.14 16
18 H -0.23 -6.61 6.48 99.48 0.64 -5.97 16
19 C 0.07 2.40 5.39 86.45 0.47 2.87 16
20 N -0.71 -16.37 4.11 -442.52 -1.82 -18.19 16
21 C 0.52 14.07 7.12 87.66 0.62 14.70 16
22 O -0.59 -21.29 15.64 -3.05 -0.05 -21.34 16
23 C -0.10 -1.94 2.52 -11.54 -0.03 -1.97 16
24 C -0.10 -2.11 5.10 30.59 0.16 -1.95 16
25 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16
26 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16
27 C -0.11 -1.59 5.92 30.61 0.18 -1.41 16
28 C -0.10 -2.01 4.50 30.61 0.14 -1.87 16
29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16
30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16
33 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16
34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16
35 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16
36 H 0.37 14.54 6.07 -74.06 -0.45 14.09 16
37 H 0.26 14.94 8.73 -92.71 -0.81 14.13 16
38 H 0.11 3.33 7.97 -2.39 -0.02 3.31 16
39 H 0.10 2.67 6.87 -2.39 -0.02 2.65 16
40 H 0.41 7.39 8.02 -92.71 -0.74 6.65 16
41 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16
42 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16
43 H 0.07 1.33 7.57 -2.38 -0.02 1.31 16
44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16
47 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16
48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
50 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16
51 H 0.04 1.06 8.10 -2.38 -0.02 1.04 16
Total: -1.00 -74.40 400.22 -0.56 -74.96
By element:
Atomic # 1 Polarization: 45.69 SS G_CDS: -0.50 Total: 45.19 kcal
Atomic # 6 Polarization: 1.58 SS G_CDS: 4.91 Total: 6.49 kcal
Atomic # 7 Polarization: -90.89 SS G_CDS: -4.56 Total: -95.45 kcal
Atomic # 8 Polarization: -70.23 SS G_CDS: -2.10 Total: -72.33 kcal
Atomic # 14 Polarization: 39.45 SS G_CDS: 1.68 Total: 41.13 kcal
Total: -74.40 -0.56 -74.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193973726.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.631 kcal
(2) G-P(sol) polarization free energy of solvation -74.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds