Wall clock time and date at job start Tue Mar 31 2020 21:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 C 1.53003 * 109.46996 * 120.00146 * 2 1 3 5 5 C 1.50703 * 109.47054 * 185.00081 * 4 2 1 6 6 O 1.21280 * 119.99782 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 2 8 8 C 1.47572 * 134.49163 * 179.97438 * 7 5 4 9 9 C 1.53951 * 86.11583 * 155.36029 * 8 7 5 10 10 O 1.42897 * 113.74300 * 269.15347 * 9 8 7 11 11 C 1.50705 * 113.74111 * 137.95217 * 9 8 7 12 12 H 1.07995 * 119.99667 * 17.19322 * 11 9 8 13 13 C 1.37876 * 119.99899 * 197.19139 * 11 9 8 14 14 N 1.31516 * 119.99917 * 194.36987 * 13 11 9 15 15 Si 1.86802 * 120.00062 * 14.36608 * 13 11 9 16 16 H 1.48496 * 109.47125 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.47124 * 300.00105 * 15 13 11 18 18 H 1.48498 * 109.47140 * 60.00316 * 15 13 11 19 19 C 1.47814 * 134.45384 * 359.86683 * 7 5 4 20 20 N 1.46500 * 109.47345 * 240.00177 * 2 1 3 21 21 C 1.34775 * 120.00090 * 84.99951 * 20 2 1 22 22 O 1.21287 * 120.00000 * 0.02562 * 21 20 2 23 23 C 1.50701 * 120.00373 * 179.97438 * 21 20 2 24 24 C 1.52996 * 109.47130 * 300.00547 * 23 21 20 25 25 C 1.53001 * 109.47347 * 179.97438 * 24 23 21 26 26 C 1.53002 * 109.46595 * 59.99710 * 25 24 23 27 27 C 1.52999 * 109.47368 * 299.99843 * 26 25 24 28 28 C 1.52991 * 109.47428 * 179.97438 * 23 21 20 29 29 H 1.09010 * 109.46796 * 60.00131 * 1 2 3 30 30 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47052 * 300.00116 * 1 2 3 32 32 H 1.08993 * 109.46709 * 65.00030 * 4 2 1 33 33 H 1.09003 * 109.46983 * 305.00372 * 4 2 1 34 34 H 1.09001 * 113.77187 * 41.06251 * 8 7 5 35 35 H 1.08998 * 113.77370 * 269.65834 * 8 7 5 36 36 H 0.96694 * 114.00247 * 174.14447 * 10 9 8 37 37 H 0.96994 * 119.99617 * 354.85921 * 14 13 11 38 38 H 1.09002 * 113.76589 * 90.38278 * 19 7 5 39 39 H 1.09000 * 113.83818 * 318.91814 * 19 7 5 40 40 H 0.96999 * 120.00196 * 264.99993 * 20 2 1 41 41 H 1.09006 * 109.46808 * 59.99692 * 23 21 20 42 42 H 1.09006 * 109.47038 * 299.99555 * 24 23 21 43 43 H 1.09006 * 109.47563 * 59.99371 * 24 23 21 44 44 H 1.08996 * 109.47031 * 299.99996 * 25 24 23 45 45 H 1.09000 * 109.46932 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46692 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47198 * 60.00388 * 26 25 24 48 48 H 1.08996 * 109.46945 * 300.00685 * 27 26 25 49 49 H 1.09001 * 109.46899 * 179.97438 * 27 26 25 50 50 H 1.08997 * 109.47640 * 300.00370 * 28 23 21 51 51 H 1.09006 * 109.46891 * 60.00353 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 8 4.1450 -0.0204 0.4446 7 7 4.2149 -1.1797 2.3349 8 6 5.6393 -1.2730 2.7092 9 6 5.1395 -1.4564 4.1538 10 8 5.0092 -0.2311 4.8774 11 6 5.8841 -2.5169 4.9234 12 1 6.8429 -2.8670 4.5706 13 6 5.3412 -3.0400 6.0777 14 7 6.0916 -3.7436 6.8972 15 14 3.5399 -2.7492 6.4779 16 1 3.2056 -3.4109 7.7646 17 1 3.2873 -1.2903 6.5918 18 1 2.6948 -3.3149 5.3957 19 6 3.8215 -1.9526 3.5318 20 7 2.0184 -0.6906 -1.1962 21 6 2.1471 -0.0182 -2.3571 22 8 1.8591 1.1587 -2.4115 23 6 2.6501 -0.7284 -3.5875 24 6 4.0527 -1.2784 -3.3213 25 6 4.5631 -1.9999 -4.5702 26 6 4.6144 -1.0171 -5.7417 27 6 3.2117 -0.4672 -6.0079 28 6 2.7008 0.2545 -4.7588 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -1.7715 1.2055 33 1 1.6053 -0.2618 2.1370 34 1 6.1965 -0.3497 2.5511 35 1 6.1435 -2.1503 2.3041 36 1 4.6118 -0.3319 5.7532 37 1 7.0059 -3.9578 6.6543 38 1 3.7909 -3.0299 3.3686 39 1 2.9298 -1.5710 4.0292 40 1 2.2491 -1.6317 -1.1527 41 1 1.9779 -1.5508 -3.8326 42 1 4.7250 -0.4560 -3.0762 43 1 4.0162 -1.9788 -2.4869 44 1 3.8909 -2.8222 -4.8150 45 1 5.5626 -2.3913 -4.3807 46 1 4.9776 -1.5313 -6.6316 47 1 5.2867 -0.1948 -5.4970 48 1 2.5395 -1.2896 -6.2526 49 1 3.2484 0.2333 -6.8422 50 1 1.7014 0.6460 -4.9483 51 1 3.3728 1.0772 -4.5139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193973726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:01 Heat of formation + Delta-G solvation = -135.594014 kcal Electronic energy + Delta-G solvation = -30602.853576 eV Core-core repulsion = 26501.322999 eV Total energy + Delta-G solvation = -4101.530578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58248 -41.07849 -39.46027 -38.53136 -36.67865 -35.94897 -34.63723 -33.24651 -31.72342 -31.52726 -30.67319 -28.85404 -27.23239 -26.47106 -24.96749 -23.51957 -22.55377 -21.64147 -21.42077 -20.62839 -20.11019 -19.89534 -18.24084 -18.09477 -17.54512 -17.43542 -16.69282 -16.50408 -16.40237 -15.83756 -15.47148 -15.24272 -15.17568 -15.05578 -14.79171 -14.72205 -14.46783 -14.15964 -13.95721 -13.81848 -13.61313 -13.50170 -13.19464 -13.11678 -12.95653 -12.90352 -12.79362 -12.42157 -12.26514 -12.13384 -12.08593 -12.01549 -11.73754 -11.56738 -11.38684 -11.30053 -11.04779 -10.99434 -10.84717 -10.62257 -10.31409 -10.03565 -9.65253 -8.81583 -6.58410 1.45000 1.52616 1.63139 1.66390 1.69080 1.88783 2.26388 2.46906 2.92385 3.25003 3.56988 3.58999 3.66004 3.73250 3.76806 3.78475 4.14214 4.21654 4.25671 4.26569 4.32419 4.36390 4.38325 4.42594 4.52359 4.55733 4.57898 4.59670 4.63927 4.65252 4.66468 4.74781 4.88833 4.93152 5.02342 5.04677 5.08775 5.14429 5.21166 5.22441 5.28792 5.31845 5.36329 5.51091 5.57269 5.64391 5.91493 6.40660 6.57039 6.78880 6.96797 7.14254 7.28991 7.30923 8.53174 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002687 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.289553 B =10418.358569 C =11316.650461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.520 3.480 6 O -0.584 6.584 7 N -0.632 5.632 8 C 0.123 3.877 9 C 0.188 3.812 10 O -0.576 6.576 11 C -0.623 4.623 12 H 0.027 0.973 13 C -0.011 4.011 14 N -0.922 5.922 15 Si 1.072 2.928 16 H -0.292 1.292 17 H -0.246 1.246 18 H -0.225 1.225 19 C 0.072 3.928 20 N -0.707 5.707 21 C 0.515 3.485 22 O -0.590 6.590 23 C -0.097 4.097 24 C -0.104 4.104 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.097 4.097 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.374 0.626 37 H 0.256 0.744 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.407 0.593 41 H 0.124 0.876 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.102 -0.718 -19.441 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.052 3.948 3 H 0.072 0.928 4 C -0.175 4.175 5 C 0.312 3.688 6 O -0.465 6.465 7 N -0.367 5.367 8 C 0.000 4.000 9 C 0.147 3.853 10 O -0.385 6.385 11 C -0.661 4.661 12 H 0.046 0.954 13 C -0.211 4.211 14 N -0.556 5.556 15 Si 0.890 3.110 16 H -0.219 1.219 17 H -0.171 1.171 18 H -0.148 1.148 19 C -0.050 4.050 20 N -0.357 5.357 21 C 0.303 3.697 22 O -0.471 6.471 23 C -0.118 4.118 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.136 4.136 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.243 0.757 41 H 0.142 0.858 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.080 0.920 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.962 0.493 -19.488 24.574 hybrid contribution 2.346 -0.192 -0.075 2.355 sum -12.617 0.301 -19.563 23.280 Atomic orbital electron populations 1.22088 0.92331 1.03723 1.02752 1.20628 0.95011 0.96096 0.83030 0.92847 1.22047 0.89296 1.05582 1.00554 1.21056 0.91216 0.77727 0.78809 1.90700 1.71546 1.44828 1.39388 1.50159 1.08982 1.53425 1.24102 1.23106 0.84159 1.00543 0.92225 1.20411 0.92593 0.83090 0.89235 1.86367 1.85558 1.33344 1.33249 1.22289 1.06649 1.23905 1.13208 0.95420 1.27456 1.09346 0.92876 0.91462 1.70962 1.09654 1.39664 1.35304 0.83874 0.70142 0.78839 0.78098 1.21874 1.17102 1.14845 1.24532 1.00112 0.97376 0.82978 1.45883 1.66576 1.14109 1.09145 1.21159 0.76037 0.86790 0.85679 1.90641 1.52420 1.17995 1.86001 1.21367 0.98750 0.99711 0.92011 1.21444 0.94001 0.99502 0.99264 1.21526 1.01749 0.98265 0.93505 1.21587 0.97027 0.98747 0.98690 1.21538 0.96783 1.00376 0.96237 1.21315 1.01285 0.96885 0.94068 0.93515 0.89883 0.89877 0.85117 0.85389 0.92643 0.88919 0.77526 0.93473 0.87549 0.88494 0.75707 0.85829 0.94474 0.91435 0.89766 0.91594 0.90228 0.93434 0.90111 0.91124 0.91955 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16 2 C 0.16 3.73 2.14 44.99 0.10 3.83 16 3 H 0.05 1.73 7.39 -2.39 -0.02 1.72 16 4 C -0.14 -2.89 4.99 29.85 0.15 -2.74 16 5 C 0.52 17.17 7.92 87.66 0.69 17.86 16 6 O -0.58 -23.93 16.08 -3.03 -0.05 -23.98 16 7 N -0.63 -22.24 3.61 -839.65 -3.03 -25.27 16 8 C 0.12 5.01 8.23 86.49 0.71 5.72 16 9 C 0.19 7.97 1.07 -10.87 -0.01 7.96 16 10 O -0.58 -25.00 13.47 -148.98 -2.01 -27.01 16 11 C -0.62 -31.60 9.04 25.60 0.23 -31.37 16 12 H 0.03 1.58 8.06 -2.91 -0.02 1.56 16 13 C -0.01 -0.55 5.44 84.65 0.46 -0.09 16 14 N -0.92 -52.29 13.70 21.45 0.29 -51.99 16 15 Si 1.07 39.45 24.56 68.60 1.68 41.13 16 16 H -0.29 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.25 -7.72 5.81 99.48 0.58 -7.14 16 18 H -0.23 -6.61 6.48 99.48 0.64 -5.97 16 19 C 0.07 2.40 5.39 86.45 0.47 2.87 16 20 N -0.71 -16.37 4.11 -442.52 -1.82 -18.19 16 21 C 0.52 14.07 7.12 87.66 0.62 14.70 16 22 O -0.59 -21.29 15.64 -3.05 -0.05 -21.34 16 23 C -0.10 -1.94 2.52 -11.54 -0.03 -1.97 16 24 C -0.10 -2.11 5.10 30.59 0.16 -1.95 16 25 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16 26 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 27 C -0.11 -1.59 5.92 30.61 0.18 -1.41 16 28 C -0.10 -2.01 4.50 30.61 0.14 -1.87 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 36 H 0.37 14.54 6.07 -74.06 -0.45 14.09 16 37 H 0.26 14.94 8.73 -92.71 -0.81 14.13 16 38 H 0.11 3.33 7.97 -2.39 -0.02 3.31 16 39 H 0.10 2.67 6.87 -2.39 -0.02 2.65 16 40 H 0.41 7.39 8.02 -92.71 -0.74 6.65 16 41 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.07 1.33 7.57 -2.38 -0.02 1.31 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 51 H 0.04 1.06 8.10 -2.38 -0.02 1.04 16 Total: -1.00 -74.40 400.22 -0.56 -74.96 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.50 Total: 45.19 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.91 Total: 6.49 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -4.56 Total: -95.45 kcal Atomic # 8 Polarization: -70.23 SS G_CDS: -2.10 Total: -72.33 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.68 Total: 41.13 kcal Total: -74.40 -0.56 -74.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.631 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds