Wall clock time and date at job start Tue Mar 31 2020 21:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47152 * 2 1 4 4 C 1.53008 * 109.46849 * 239.99979 * 2 1 3 5 5 C 1.50706 * 109.46829 * 174.99900 * 4 2 1 6 6 O 1.21274 * 119.99982 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99649 * 180.02562 * 5 4 2 8 8 C 1.47577 * 134.49071 * 180.02562 * 7 5 4 9 9 C 1.53947 * 86.11678 * 155.35009 * 8 7 5 10 10 O 1.42893 * 113.74417 * 269.15203 * 9 8 7 11 11 C 1.50710 * 113.73764 * 137.94968 * 9 8 7 12 12 H 1.07994 * 120.00413 * 6.94299 * 11 9 8 13 13 C 1.37873 * 119.99460 * 186.94705 * 11 9 8 14 14 N 1.31516 * 119.99596 * 178.17803 * 13 11 9 15 15 Si 1.86799 * 120.00523 * 358.16911 * 13 11 9 16 16 H 1.48502 * 109.47432 * 270.00789 * 15 13 11 17 17 H 1.48509 * 109.46693 * 30.00560 * 15 13 11 18 18 H 1.48498 * 109.47418 * 149.99892 * 15 13 11 19 19 C 1.47812 * 134.45776 * 359.86136 * 7 5 4 20 20 N 1.46492 * 109.47333 * 120.00169 * 2 1 3 21 21 C 1.34775 * 120.00493 * 274.99953 * 20 2 1 22 22 O 1.21287 * 119.99774 * 359.97438 * 21 20 2 23 23 C 1.50694 * 120.00750 * 179.97438 * 21 20 2 24 24 C 1.52998 * 109.47333 * 300.00247 * 23 21 20 25 25 C 1.53000 * 109.47538 * 179.97438 * 24 23 21 26 26 C 1.52995 * 109.47039 * 59.99711 * 25 24 23 27 27 C 1.53008 * 109.47300 * 300.00456 * 26 25 24 28 28 C 1.52995 * 109.47429 * 179.97438 * 23 21 20 29 29 H 1.09005 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47047 * 299.99951 * 1 2 3 31 31 H 1.08999 * 109.47403 * 59.99832 * 1 2 3 32 32 H 1.08997 * 109.46861 * 55.00062 * 4 2 1 33 33 H 1.08999 * 109.47254 * 295.00251 * 4 2 1 34 34 H 1.08996 * 113.77269 * 41.04774 * 8 7 5 35 35 H 1.09002 * 113.76345 * 269.65063 * 8 7 5 36 36 H 0.96694 * 114.00533 * 162.49871 * 10 9 8 37 37 H 0.96997 * 120.00619 * 358.27359 * 14 13 11 38 38 H 1.09000 * 113.76478 * 90.38273 * 19 7 5 39 39 H 1.09001 * 113.83768 * 318.92464 * 19 7 5 40 40 H 0.97005 * 120.00402 * 94.99421 * 20 2 1 41 41 H 1.09001 * 109.47007 * 59.99647 * 23 21 20 42 42 H 1.09004 * 109.47063 * 299.99831 * 24 23 21 43 43 H 1.09003 * 109.46985 * 59.99207 * 24 23 21 44 44 H 1.08996 * 109.46783 * 300.00227 * 25 24 23 45 45 H 1.09001 * 109.47172 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.47708 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47188 * 59.99924 * 26 25 24 48 48 H 1.09001 * 109.46566 * 299.99849 * 27 26 25 49 49 H 1.08997 * 109.46674 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47554 * 300.00263 * 28 23 21 51 51 H 1.09001 * 109.47188 * 59.99912 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1449 -0.0204 -0.4447 7 7 4.2148 -1.1797 -2.3349 8 6 5.6392 -1.2730 -2.7094 9 6 5.2443 -2.5433 -3.4842 10 8 5.3478 -3.7425 -2.7141 11 6 5.8975 -2.6559 -4.8377 12 1 6.6555 -1.9454 -5.1324 13 6 5.5272 -3.6662 -5.6998 14 7 6.0713 -3.7433 -6.8947 15 14 4.2530 -4.9255 -5.1707 16 1 4.9323 -6.0717 -4.5150 17 1 3.3052 -4.2988 -4.2144 18 1 3.5083 -5.4068 -6.3619 19 6 3.8218 -1.9568 -3.5293 20 7 2.0183 -0.6906 1.1961 21 6 2.1471 -0.0184 2.3571 22 8 1.8591 1.1585 2.4115 23 6 2.6489 -0.7289 3.5876 24 6 1.7045 -1.8824 3.9313 25 6 2.2143 -2.6042 5.1804 26 6 2.2663 -1.6214 6.3517 27 6 3.2109 -0.4678 6.0080 28 6 2.7012 0.2544 4.7587 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2618 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 6.3037 -1.4615 -1.8662 35 1 5.9800 -0.4574 -3.3472 36 1 4.8617 -4.4915 -3.0853 37 1 6.7144 -3.0751 -7.1789 38 1 3.6274 -1.3427 -4.4086 39 1 3.0381 -2.6903 -3.3394 40 1 2.2490 -1.6318 1.1526 41 1 3.6480 -1.1215 3.3985 42 1 0.7053 -1.4899 4.1205 43 1 1.6677 -2.5828 3.0969 44 1 3.2133 -2.9967 4.9908 45 1 1.5416 -3.4263 5.4249 46 1 2.6291 -2.1356 7.2417 47 1 1.2673 -1.2288 6.5413 48 1 4.2099 -0.8604 5.8185 49 1 3.2482 0.2321 6.8428 50 1 3.3743 1.0759 4.5136 51 1 1.7022 0.6473 4.9480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193973738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:05 Heat of formation + Delta-G solvation = -108.423661 kcal Electronic energy + Delta-G solvation = -30495.591759 eV Core-core repulsion = 26395.239377 eV Total energy + Delta-G solvation = -4100.352383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41077 -39.76882 -38.22481 -37.49293 -35.54772 -34.41085 -32.68868 -32.27987 -30.96929 -30.61259 -29.36473 -27.54598 -25.68038 -24.82271 -24.05852 -22.82623 -21.53479 -20.49983 -20.09504 -19.79707 -18.68115 -18.03617 -17.23764 -16.68089 -16.43178 -16.08316 -15.51660 -15.27189 -15.01509 -14.93721 -14.46444 -14.32932 -14.13814 -13.72002 -13.61169 -13.28180 -13.18724 -13.08868 -12.66560 -12.48293 -12.47533 -12.36984 -12.28768 -12.15976 -11.84130 -11.76729 -11.48852 -11.45619 -11.37960 -11.09368 -10.89722 -10.86371 -10.65113 -10.47146 -10.35155 -9.94737 -9.64386 -9.58644 -9.46867 -9.00069 -8.92468 -8.70593 -8.08976 -6.75190 -4.52177 2.75220 2.97210 2.99273 3.09680 3.21252 3.26091 3.29667 4.13210 4.40790 4.43091 4.48806 4.56970 4.65074 4.72863 4.94527 4.95539 5.02954 5.10171 5.14506 5.16755 5.22471 5.27793 5.31155 5.36211 5.38154 5.48003 5.51767 5.57060 5.58865 5.75647 5.81167 5.84953 5.90987 5.92102 5.93979 5.96047 6.00183 6.09558 6.11033 6.18507 6.21444 6.24189 6.37145 6.52272 6.54832 7.47775 7.56003 8.02667 8.21376 8.32677 8.40238 8.52008 8.55806 9.23916 10.60456 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002604 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.654103 B =10752.083586 C =11201.957967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.094 0.906 4 C -0.147 4.147 5 C 0.525 3.475 6 O -0.549 6.549 7 N -0.636 5.636 8 C 0.128 3.872 9 C 0.197 3.803 10 O -0.556 6.556 11 C -0.608 4.608 12 H 0.071 0.929 13 C 0.035 3.965 14 N -0.892 5.892 15 Si 1.039 2.961 16 H -0.275 1.275 17 H -0.274 1.274 18 H -0.281 1.281 19 C 0.060 3.940 20 N -0.713 5.713 21 C 0.526 3.474 22 O -0.545 6.545 23 C -0.107 4.107 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.097 4.097 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.352 0.648 37 H 0.274 0.726 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.397 0.603 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 1.321 18.426 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 H 0.112 0.888 4 C -0.187 4.187 5 C 0.314 3.686 6 O -0.427 6.427 7 N -0.371 5.371 8 C 0.006 3.994 9 C 0.156 3.844 10 O -0.365 6.365 11 C -0.646 4.646 12 H 0.089 0.911 13 C -0.173 4.173 14 N -0.525 5.525 15 Si 0.868 3.132 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.208 1.208 19 C -0.063 4.063 20 N -0.363 5.363 21 C 0.312 3.688 22 O -0.423 6.423 23 C -0.129 4.129 24 C -0.147 4.147 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.202 0.798 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.230 0.770 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.714 1.614 18.926 22.857 hybrid contribution 0.664 0.531 -0.244 0.884 sum -12.050 2.145 18.682 22.334 Atomic orbital electron populations 1.22179 0.94929 1.02145 1.02719 1.20639 0.93159 0.98071 0.82757 0.88754 1.21985 0.93572 1.03260 0.99880 1.20143 0.89165 0.78060 0.81261 1.90695 1.70157 1.42957 1.38937 1.50258 1.10292 1.53602 1.22906 1.23215 0.82273 0.96661 0.97274 1.20564 0.90447 0.82667 0.90709 1.86485 1.75660 1.20718 1.53655 1.22261 1.26121 1.17719 0.98458 0.91096 1.25825 0.99288 0.98382 0.93803 1.70767 1.26990 1.36106 1.18593 0.84195 0.76246 0.76547 0.76210 1.20105 1.20060 1.20772 1.24757 1.01763 0.93673 0.86140 1.45881 1.67267 1.13691 1.09481 1.20495 0.76816 0.87063 0.84381 1.90660 1.50319 1.16004 1.85282 1.21351 1.01088 0.97019 0.93402 1.21516 0.98744 0.96082 0.98329 1.21530 1.01642 0.97806 0.94626 1.21556 0.99996 0.96504 0.97771 1.21578 0.99205 0.97418 0.97616 1.21325 1.02503 0.97029 0.92675 0.92398 0.91825 0.91499 0.87704 0.88753 0.90887 0.89258 0.79780 0.91590 0.88874 0.90991 0.76957 0.88525 0.91467 0.91552 0.91639 0.91704 0.92038 0.91991 0.91873 0.91764 0.91239 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 2 C 0.16 2.03 2.14 -67.93 -0.15 1.88 16 3 H 0.09 1.50 7.39 -51.93 -0.38 1.11 16 4 C -0.15 -1.85 4.99 -27.88 -0.14 -1.99 16 5 C 0.52 9.23 7.92 -10.98 -0.09 9.14 16 6 O -0.55 -11.40 16.08 5.56 0.09 -11.31 16 7 N -0.64 -11.91 3.61 -178.13 -0.64 -12.55 16 8 C 0.13 2.61 8.23 -2.97 -0.02 2.59 16 9 C 0.20 4.29 1.06 -90.85 -0.10 4.20 16 10 O -0.56 -12.24 13.26 -35.23 -0.47 -12.71 16 11 C -0.61 -15.33 9.05 -34.44 -0.31 -15.64 16 12 H 0.07 1.93 8.04 -52.49 -0.42 1.51 16 13 C 0.03 0.89 5.47 -17.82 -0.10 0.79 16 14 N -0.89 -24.90 13.70 55.43 0.76 -24.14 16 15 Si 1.04 21.32 24.78 -169.99 -4.21 17.11 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -4.80 4.72 56.52 0.27 -4.53 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 C 0.06 1.10 6.86 -2.85 -0.02 1.08 16 20 N -0.71 -9.00 4.11 -53.81 -0.22 -9.22 16 21 C 0.53 7.32 7.12 -10.99 -0.08 7.24 16 22 O -0.55 -9.51 15.64 5.55 0.09 -9.42 16 23 C -0.11 -1.16 2.52 -91.78 -0.23 -1.39 16 24 C -0.11 -0.91 5.10 -26.73 -0.14 -1.05 16 25 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 26 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 27 C -0.12 -0.99 5.92 -26.70 -0.16 -1.15 16 28 C -0.10 -1.03 4.50 -26.71 -0.12 -1.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 36 H 0.35 7.03 4.32 45.56 0.20 7.22 16 37 H 0.27 7.63 8.71 -40.82 -0.36 7.28 16 38 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 39 H 0.07 1.20 6.56 -51.93 -0.34 0.86 16 40 H 0.40 4.36 8.02 -40.82 -0.33 4.03 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 51 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -31.88 399.30 -8.76 -40.63 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -8.56 Total: 14.35 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.61 Total: 1.24 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.11 Total: -45.91 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.29 Total: -33.44 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.21 Total: 17.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.88 -8.76 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.792 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds