Wall clock time and date at job start Tue Mar 31 2020 21:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47152 * 2 1 4 4 C 1.53008 * 109.46849 * 239.99979 * 2 1 3 5 5 C 1.50706 * 109.46829 * 174.99900 * 4 2 1 6 6 O 1.21274 * 119.99982 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99649 * 180.02562 * 5 4 2 8 8 C 1.47577 * 134.49071 * 180.02562 * 7 5 4 9 9 C 1.53947 * 86.11678 * 155.35009 * 8 7 5 10 10 O 1.42893 * 113.74417 * 269.15203 * 9 8 7 11 11 C 1.50710 * 113.73764 * 137.94968 * 9 8 7 12 12 H 1.07994 * 120.00413 * 6.94299 * 11 9 8 13 13 C 1.37873 * 119.99460 * 186.94705 * 11 9 8 14 14 N 1.31516 * 119.99596 * 178.17803 * 13 11 9 15 15 Si 1.86799 * 120.00523 * 358.16911 * 13 11 9 16 16 H 1.48502 * 109.47432 * 270.00789 * 15 13 11 17 17 H 1.48509 * 109.46693 * 30.00560 * 15 13 11 18 18 H 1.48498 * 109.47418 * 149.99892 * 15 13 11 19 19 C 1.47812 * 134.45776 * 359.86136 * 7 5 4 20 20 N 1.46492 * 109.47333 * 120.00169 * 2 1 3 21 21 C 1.34775 * 120.00493 * 274.99953 * 20 2 1 22 22 O 1.21287 * 119.99774 * 359.97438 * 21 20 2 23 23 C 1.50694 * 120.00750 * 179.97438 * 21 20 2 24 24 C 1.52998 * 109.47333 * 300.00247 * 23 21 20 25 25 C 1.53000 * 109.47538 * 179.97438 * 24 23 21 26 26 C 1.52995 * 109.47039 * 59.99711 * 25 24 23 27 27 C 1.53008 * 109.47300 * 300.00456 * 26 25 24 28 28 C 1.52995 * 109.47429 * 179.97438 * 23 21 20 29 29 H 1.09005 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47047 * 299.99951 * 1 2 3 31 31 H 1.08999 * 109.47403 * 59.99832 * 1 2 3 32 32 H 1.08997 * 109.46861 * 55.00062 * 4 2 1 33 33 H 1.08999 * 109.47254 * 295.00251 * 4 2 1 34 34 H 1.08996 * 113.77269 * 41.04774 * 8 7 5 35 35 H 1.09002 * 113.76345 * 269.65063 * 8 7 5 36 36 H 0.96694 * 114.00533 * 162.49871 * 10 9 8 37 37 H 0.96997 * 120.00619 * 358.27359 * 14 13 11 38 38 H 1.09000 * 113.76478 * 90.38273 * 19 7 5 39 39 H 1.09001 * 113.83768 * 318.92464 * 19 7 5 40 40 H 0.97005 * 120.00402 * 94.99421 * 20 2 1 41 41 H 1.09001 * 109.47007 * 59.99647 * 23 21 20 42 42 H 1.09004 * 109.47063 * 299.99831 * 24 23 21 43 43 H 1.09003 * 109.46985 * 59.99207 * 24 23 21 44 44 H 1.08996 * 109.46783 * 300.00227 * 25 24 23 45 45 H 1.09001 * 109.47172 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.47708 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47188 * 59.99924 * 26 25 24 48 48 H 1.09001 * 109.46566 * 299.99849 * 27 26 25 49 49 H 1.08997 * 109.46674 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47554 * 300.00263 * 28 23 21 51 51 H 1.09001 * 109.47188 * 59.99912 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1449 -0.0204 -0.4447 7 7 4.2148 -1.1797 -2.3349 8 6 5.6392 -1.2730 -2.7094 9 6 5.2443 -2.5433 -3.4842 10 8 5.3478 -3.7425 -2.7141 11 6 5.8975 -2.6559 -4.8377 12 1 6.6555 -1.9454 -5.1324 13 6 5.5272 -3.6662 -5.6998 14 7 6.0713 -3.7433 -6.8947 15 14 4.2530 -4.9255 -5.1707 16 1 4.9323 -6.0717 -4.5150 17 1 3.3052 -4.2988 -4.2144 18 1 3.5083 -5.4068 -6.3619 19 6 3.8218 -1.9568 -3.5293 20 7 2.0183 -0.6906 1.1961 21 6 2.1471 -0.0184 2.3571 22 8 1.8591 1.1585 2.4115 23 6 2.6489 -0.7289 3.5876 24 6 1.7045 -1.8824 3.9313 25 6 2.2143 -2.6042 5.1804 26 6 2.2663 -1.6214 6.3517 27 6 3.2109 -0.4678 6.0080 28 6 2.7012 0.2544 4.7587 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2618 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 6.3037 -1.4615 -1.8662 35 1 5.9800 -0.4574 -3.3472 36 1 4.8617 -4.4915 -3.0853 37 1 6.7144 -3.0751 -7.1789 38 1 3.6274 -1.3427 -4.4086 39 1 3.0381 -2.6903 -3.3394 40 1 2.2490 -1.6318 1.1526 41 1 3.6480 -1.1215 3.3985 42 1 0.7053 -1.4899 4.1205 43 1 1.6677 -2.5828 3.0969 44 1 3.2133 -2.9967 4.9908 45 1 1.5416 -3.4263 5.4249 46 1 2.6291 -2.1356 7.2417 47 1 1.2673 -1.2288 6.5413 48 1 4.2099 -0.8604 5.8185 49 1 3.2482 0.2321 6.8428 50 1 3.3743 1.0759 4.5136 51 1 1.7022 0.6473 4.9480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193973738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:04 Heat of formation + Delta-G solvation = -131.866502 kcal Electronic energy + Delta-G solvation = -30496.608317 eV Core-core repulsion = 26395.239377 eV Total energy + Delta-G solvation = -4101.368941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59920 -41.09877 -39.50602 -38.51973 -36.69363 -36.06741 -34.65075 -33.24019 -31.70540 -31.52010 -30.67704 -28.83316 -27.19760 -26.51697 -24.93965 -23.51683 -22.55882 -21.67378 -21.41482 -20.62013 -20.16370 -19.88065 -18.26063 -18.06992 -17.71997 -17.48545 -16.81124 -16.59005 -16.13796 -15.96139 -15.71689 -15.16805 -15.11625 -15.02336 -14.83066 -14.61391 -14.39844 -14.09502 -13.91127 -13.89110 -13.77278 -13.29161 -13.27509 -13.10890 -13.05039 -12.95144 -12.80154 -12.52703 -12.23977 -12.07027 -12.06026 -12.01150 -11.65847 -11.55505 -11.37109 -11.28659 -11.05176 -11.02829 -10.80943 -10.61449 -10.44359 -10.05210 -9.65699 -8.79186 -6.58719 1.37429 1.51470 1.61218 1.66401 1.69648 1.86432 2.25204 2.45739 2.85652 3.26099 3.53694 3.57618 3.66696 3.74811 3.78318 3.80289 4.13783 4.22169 4.26038 4.32380 4.32711 4.36413 4.40442 4.43618 4.53495 4.56705 4.57490 4.60661 4.63976 4.68768 4.69825 4.74481 4.87989 4.93728 4.94628 5.05204 5.10416 5.15146 5.22592 5.23957 5.29093 5.34202 5.37634 5.52759 5.57298 5.62968 5.91043 6.38729 6.56374 6.74304 6.82987 7.12856 7.28689 7.30151 8.54789 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002604 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.654103 B =10752.083586 C =11201.957967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.055 0.945 4 C -0.134 4.134 5 C 0.520 3.480 6 O -0.587 6.587 7 N -0.635 5.635 8 C 0.120 3.880 9 C 0.187 3.813 10 O -0.562 6.562 11 C -0.614 4.614 12 H 0.030 0.970 13 C -0.016 4.016 14 N -0.928 5.928 15 Si 1.073 2.927 16 H -0.262 1.262 17 H -0.219 1.219 18 H -0.286 1.286 19 C 0.076 3.924 20 N -0.707 5.707 21 C 0.518 3.482 22 O -0.590 6.590 23 C -0.103 4.103 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.096 4.096 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.363 0.637 37 H 0.256 0.744 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.407 0.593 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.044 0.956 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 -0.981 19.932 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.052 3.948 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.312 3.688 6 O -0.468 6.468 7 N -0.369 5.369 8 C -0.003 4.003 9 C 0.147 3.853 10 O -0.373 6.373 11 C -0.652 4.652 12 H 0.048 0.952 13 C -0.215 4.215 14 N -0.562 5.562 15 Si 0.893 3.107 16 H -0.187 1.187 17 H -0.143 1.143 18 H -0.213 1.213 19 C -0.046 4.046 20 N -0.357 5.357 21 C 0.305 3.695 22 O -0.470 6.470 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.134 4.134 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.215 0.785 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.242 0.758 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.912 -0.690 20.439 25.911 hybrid contribution 1.820 1.357 -0.727 2.383 sum -14.092 0.667 19.712 24.240 Atomic orbital electron populations 1.22084 0.92333 1.03700 1.02744 1.20644 0.95015 0.96122 0.83000 0.92677 1.22042 0.89132 1.05523 1.00649 1.21079 0.91148 0.76686 0.79878 1.90693 1.71477 1.44414 1.40196 1.50225 1.09105 1.54135 1.23440 1.23116 0.83890 0.96395 0.96891 1.20511 0.92955 0.83070 0.88804 1.86463 1.76359 1.21152 1.53336 1.22390 1.25358 1.16829 1.00587 0.95187 1.27450 1.00718 1.00458 0.92923 1.70921 1.28356 1.36462 1.20479 0.83874 0.74893 0.74750 0.77134 1.18748 1.14269 1.21303 1.24564 0.99897 0.93856 0.86278 1.45896 1.66573 1.14108 1.09158 1.21089 0.76151 0.86694 0.85523 1.90635 1.52397 1.17958 1.86039 1.21375 1.01496 0.97629 0.91965 1.21509 0.97838 0.95194 0.99512 1.21541 1.02051 0.97997 0.93804 1.21561 0.99686 0.96028 0.98404 1.21560 0.99481 0.97904 0.96481 1.21291 1.01441 0.96688 0.93980 0.89957 0.93567 0.89797 0.85036 0.85387 0.91961 0.89612 0.78548 0.93521 0.88308 0.87520 0.75759 0.88641 0.91637 0.90264 0.91527 0.90094 0.90644 0.91912 0.91774 0.91132 0.93717 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.16 3.69 2.14 44.99 0.10 3.78 16 3 H 0.05 1.75 7.39 -2.39 -0.02 1.73 16 4 C -0.13 -2.82 4.99 29.85 0.15 -2.67 16 5 C 0.52 17.08 7.92 87.66 0.69 17.78 16 6 O -0.59 -24.10 16.08 -3.01 -0.05 -24.15 16 7 N -0.63 -22.19 3.61 -839.69 -3.03 -25.22 16 8 C 0.12 4.89 8.23 86.49 0.71 5.60 16 9 C 0.19 7.85 1.06 -10.88 -0.01 7.84 16 10 O -0.56 -23.15 13.26 -148.98 -1.98 -25.12 16 11 C -0.61 -31.32 9.05 25.60 0.23 -31.09 16 12 H 0.03 1.72 8.04 -2.91 -0.02 1.69 16 13 C -0.02 -0.82 5.47 84.65 0.46 -0.35 16 14 N -0.93 -53.16 13.70 21.45 0.29 -52.86 16 15 Si 1.07 40.07 24.78 68.60 1.70 41.77 16 16 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 17 H -0.22 -6.15 4.72 99.48 0.47 -5.68 16 18 H -0.29 -11.00 7.11 99.48 0.71 -10.29 16 19 C 0.08 2.52 6.86 86.43 0.59 3.11 16 20 N -0.71 -16.70 4.11 -442.55 -1.82 -18.51 16 21 C 0.52 14.36 7.12 87.66 0.62 14.99 16 22 O -0.59 -21.30 15.64 -3.05 -0.05 -21.35 16 23 C -0.10 -2.17 2.52 -11.54 -0.03 -2.20 16 24 C -0.10 -1.50 5.10 30.59 0.16 -1.34 16 25 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 26 C -0.12 -1.46 5.92 30.60 0.18 -1.28 16 27 C -0.12 -1.81 5.92 30.61 0.18 -1.63 16 28 C -0.10 -2.06 4.50 30.61 0.14 -1.92 16 29 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 36 H 0.36 12.91 4.32 -74.06 -0.32 12.59 16 37 H 0.26 15.03 8.71 -92.71 -0.81 14.22 16 38 H 0.10 3.21 8.09 -2.39 -0.02 3.19 16 39 H 0.11 2.82 6.56 -2.39 -0.02 2.81 16 40 H 0.41 7.79 8.02 -92.70 -0.74 7.05 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.08 0.95 7.56 -2.39 -0.02 0.93 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 51 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -74.34 399.30 -0.30 -74.64 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -0.41 Total: 43.26 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.04 Total: 7.56 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -4.56 Total: -96.60 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -2.07 Total: -70.62 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.70 Total: 41.77 kcal Total: -74.34 -0.30 -74.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.229 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds